Strain Fitness in Caulobacter crescentus NA1000 around CCNA_02458

Experiment: PYE with nitrate 100 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with nitrate 100 mM
2,598,681	+		CCNA_02457	0.25	+0.7
2,598,684	-		CCNA_02457	0.25	+0.6
2,598,773	-		CCNA_02457	0.34	-0.0
2,598,820	-		CCNA_02457	0.39	+0.5
2,598,833	+		CCNA_02457	0.40	-0.0
2,598,833	+		CCNA_02457	0.40	-1.1
2,598,833	+		CCNA_02457	0.40	-1.0
2,598,836	-		CCNA_02457	0.40	-0.4
2,598,841	-		CCNA_02457	0.41	+1.7
2,598,846	+		CCNA_02457	0.41	-0.3
2,598,846	+		CCNA_02457	0.41	-1.6
2,598,846	+		CCNA_02457	0.41	-0.5
2,598,846	+		CCNA_02457	0.41	+0.7
2,598,846	+		CCNA_02457	0.41	-0.7
2,598,851	+		CCNA_02457	0.42	+0.3
2,598,859	-		CCNA_02457	0.42	-0.2
2,598,938	-		CCNA_02457	0.50	-0.4
2,598,949	+		CCNA_02457	0.51	+0.5
2,598,957	+		CCNA_02457	0.52	-1.9
2,598,965	-		CCNA_02457	0.53	-0.5
2,599,000	-		CCNA_02457	0.56	+0.1
2,599,049	-		CCNA_02457	0.61	+1.4
2,599,049	-		CCNA_02457	0.61	+1.0
2,599,065	-		CCNA_02457	0.63	-0.5
2,599,065	-				+3.9
2,599,116	+		CCNA_02457	0.68	+0.7
2,599,124	-		CCNA_02457	0.69	-0.0
2,599,131	+		CCNA_02457	0.69	-0.0
2,599,131	+		CCNA_02457	0.69	-0.0
2,599,131	+		CCNA_02457	0.69	-0.0
2,599,131	+		CCNA_02457	0.69	-0.3
2,599,139	-		CCNA_02457	0.70	-0.9
2,599,139	-		CCNA_02457	0.70	+2.3
2,599,139	-		CCNA_02457	0.70	+0.6
2,599,139	-		CCNA_02457	0.70	+0.1
2,599,175	-		CCNA_02457	0.74	-0.0
2,599,195	+		CCNA_02457	0.76	+0.7
2,599,203	+		CCNA_02457	0.77	+0.3
2,599,203	-		CCNA_02457	0.77	-0.1
2,599,203	-		CCNA_02457	0.77	-0.1
2,599,203	-		CCNA_02457	0.77	+0.7
2,599,221	+		CCNA_02457	0.78	+0.7
2,599,241	-		CCNA_02457	0.80	-1.1
2,599,241	-		CCNA_02457	0.80	-0.3
2,599,241	-		CCNA_02457	0.80	-1.3
2,599,241	-		CCNA_02457	0.80	-1.8
2,599,283	-		CCNA_02457	0.85	-0.9
2,599,319	+		CCNA_02457	0.88	+1.1
2,599,335	+		CCNA_02457	0.90	-1.5
2,599,335	+		CCNA_02457	0.90	-2.2
2,599,335	+		CCNA_02457	0.90	-1.9
2,599,335	+		CCNA_02457	0.90	-1.3
2,599,335	+		CCNA_02457	0.90	+2.3
2,599,343	-				+0.7
2,599,343	-				-1.1
2,599,343	-				-0.3
2,599,343	-				-1.4
2,599,343	-				-1.2
2,599,343	-				+0.3
2,599,343	-				+1.1
2,599,343	-				-0.5
2,599,370	+				+1.3
2,599,403	+				-0.5
2,599,430	-				-1.3
2,599,502	+				+0.3
2,599,583	+				-0.1
2,599,604	-				+0.3
2,599,646	-				-0.5
2,599,651	-				-1.6
2,599,669	+				-0.3
2,599,677	-				-0.5
2,599,680	+				-0.7
2,599,687	-				+0.3
2,599,689	+				+0.2
2,599,698	+				+0.4
2,599,706	-				+0.7
2,599,721	+				-1.2
2,599,757	+		CCNA_02458	0.10	-1.1
2,599,760	+		CCNA_02458	0.10	+0.3
2,599,822	+		CCNA_02458	0.15	+0.6
2,599,828	-				+1.3
2,599,828	-		CCNA_02458	0.15	-1.0
2,599,911	+		CCNA_02458	0.21	+1.8
2,599,916	+		CCNA_02458	0.21	-0.3
2,599,934	-		CCNA_02458	0.22	-1.8
2,599,980	+		CCNA_02458	0.25	-0.0
2,600,069	+		CCNA_02458	0.32	+1.5
2,600,069	+		CCNA_02458	0.32	-0.4
2,600,069	+		CCNA_02458	0.32	-1.9
2,600,069	+		CCNA_02458	0.32	+3.4
2,600,069	+		CCNA_02458	0.32	+1.0
2,600,077	-		CCNA_02458	0.32	+0.7
2,600,077	-		CCNA_02458	0.32	+2.3
2,600,077	-		CCNA_02458	0.32	-1.8
2,600,137	+		CCNA_02458	0.36	-1.3
2,600,137	+		CCNA_02458	0.36	-2.1
2,600,154	+		CCNA_02458	0.37	-0.2
2,600,166	+		CCNA_02458	0.38	+0.7
2,600,168	+		CCNA_02458	0.38	-1.1
2,600,195	+		CCNA_02458	0.40	-0.0
2,600,195	+		CCNA_02458	0.40	-0.6
2,600,205	+		CCNA_02458	0.41	+0.3
2,600,215	+		CCNA_02458	0.42	+1.1
2,600,228	-		CCNA_02458	0.42	+1.8
2,600,229	-		CCNA_02458	0.43	+2.3
2,600,272	-		CCNA_02458	0.46	-1.9
2,600,301	+		CCNA_02458	0.48	-0.6
2,600,301	+		CCNA_02458	0.48	-1.0
2,600,301	+		CCNA_02458	0.48	-0.5
2,600,306	+		CCNA_02458	0.48	+0.3
2,600,309	-		CCNA_02458	0.48	-0.7
2,600,312	+		CCNA_02458	0.48	+1.1
2,600,314	-		CCNA_02458	0.48	-0.0
2,600,314	-		CCNA_02458	0.48	-1.5
2,600,315	-		CCNA_02458	0.48	+2.3
2,600,319	+		CCNA_02458	0.49	+0.7
2,600,319	+		CCNA_02458	0.49	-1.5
2,600,319	+		CCNA_02458	0.49	-0.4
2,600,319	+		CCNA_02458	0.49	-0.4
2,600,319	+		CCNA_02458	0.49	+0.3
2,600,324	+		CCNA_02458	0.49	-1.3
2,600,327	-		CCNA_02458	0.49	-0.9
2,600,327	-		CCNA_02458	0.49	-0.5
2,600,327	-		CCNA_02458	0.49	+0.3
2,600,327	-		CCNA_02458	0.49	+1.3
2,600,327	-		CCNA_02458	0.49	-2.4
2,600,329	+		CCNA_02458	0.49	+0.2
2,600,329	+		CCNA_02458	0.49	+0.4
2,600,334	+		CCNA_02458	0.50	+0.2
2,600,337	-		CCNA_02458	0.50	+2.3
2,600,337	-		CCNA_02458	0.50	+0.3
2,600,337	-		CCNA_02458	0.50	-0.3
2,600,337	-		CCNA_02458	0.50	-0.9
2,600,337	-		CCNA_02458	0.50	-0.0
2,600,352	+		CCNA_02458	0.51	+0.3
2,600,375	-				+3.3
2,600,379	+		CCNA_02458	0.53	-0.1
2,600,379	+		CCNA_02458	0.53	-2.2
2,600,387	-		CCNA_02458	0.53	-0.3
2,600,407	+		CCNA_02458	0.55	-1.0
2,600,430	-		CCNA_02458	0.56	-0.3
2,600,444	+		CCNA_02458	0.57	+0.5
2,600,453	+		CCNA_02458	0.58	+0.5
2,600,456	-		CCNA_02458	0.58	-1.0
2,600,505	+		CCNA_02458	0.62	+0.1
2,600,510	+		CCNA_02458	0.62	-0.3
2,600,675	-		CCNA_02458	0.73	-0.0
2,600,685	+		CCNA_02458	0.74	-0.5
2,600,722	+		CCNA_02458	0.77	-0.7
2,600,726	-		CCNA_02458	0.77	+2.3
2,600,801	+		CCNA_02458	0.82	-0.5
2,600,802	+		CCNA_02458	0.82	+0.3
2,600,808	+		CCNA_02458	0.82	+1.5
2,600,808	+		CCNA_02458	0.82	+1.3
2,600,808	+		CCNA_02458	0.82	-1.0
2,600,809	-		CCNA_02458	0.83	-1.0
2,600,856	+		CCNA_02458	0.86	+1.3
2,600,856	+		CCNA_02458	0.86	-0.7
2,600,856	+		CCNA_02458	0.86	-1.2
2,600,856	+		CCNA_02458	0.86	-0.5
2,600,856	+		CCNA_02458	0.86	-1.8
2,600,856	+		CCNA_02458	0.86	-0.5
2,600,856	+		CCNA_02458	0.86	-1.0
2,600,856	+		CCNA_02458	0.86	-1.4
2,600,864	-		CCNA_02458	0.86	-1.7
2,600,864	-		CCNA_02458	0.86	-0.4
2,600,864	-		CCNA_02458	0.86	+0.4
2,600,864	-		CCNA_02458	0.86	-0.5
2,600,864	-		CCNA_02458	0.86	+2.3
2,600,864	-		CCNA_02458	0.86	+1.8
2,600,872	+		CCNA_02458	0.87	+0.7
2,600,894	+				+3.3
2,600,907	+		CCNA_02458	0.89	-3.1
2,600,912	+		CCNA_02458	0.90	+1.0
2,600,947	+				+0.7
2,600,977	+				-2.6
2,600,977	+				-0.9
2,600,978	-				-1.7
2,600,985	-				-1.6
2,601,007	+				-1.3
2,601,015	-				-1.6
2,601,047	+				-0.3
2,601,053	-				-0.5
2,601,116	+				+0.9
2,601,139	+				-0.6
2,601,139	+				+1.1
2,601,144	+				+0.8
2,601,149	+				+0.2
2,601,151	+				-0.2
2,601,157	-				+0.7
2,601,157	-				+0.5
2,601,159	-				-0.0
2,601,199	+				-0.7
2,601,248	+				+2.3
2,601,256	-				-0.3
2,601,261	-				+2.3
2,601,284	-		CCNA_02459	0.10	-0.0
2,601,286	+		CCNA_02459	0.10	-0.5
2,601,303	+		CCNA_02459	0.11	+1.2
2,601,321	+		CCNA_02459	0.12	-0.7
2,601,321	-		CCNA_02459	0.12	+1.3
2,601,408	-		CCNA_02459	0.16	+1.3
2,601,423	+		CCNA_02459	0.17	+1.1
2,601,423	+		CCNA_02459	0.17	+1.0
2,601,423	+		CCNA_02459	0.17	-0.7
2,601,431	-		CCNA_02459	0.17	+1.3
2,601,474	-		CCNA_02459	0.19	+2.3
2,601,486	+		CCNA_02459	0.20	-0.3
2,601,486	+		CCNA_02459	0.20	-1.1
2,601,486	+		CCNA_02459	0.20	-1.7
2,601,494	-		CCNA_02459	0.20	-1.0
2,601,534	-		CCNA_02459	0.22	-0.3
2,601,534	-		CCNA_02459	0.22	-0.3
2,601,541	+		CCNA_02459	0.22	+0.2
2,601,588	-		CCNA_02459	0.24	-0.3
2,601,606	+		CCNA_02459	0.25	+1.3
2,601,638	+		CCNA_02459	0.27	-0.3
2,601,646	+		CCNA_02459	0.27	+0.2
2,601,654	-		CCNA_02459	0.27	-0.5
2,601,655	+		CCNA_02459	0.27	-0.1
2,601,699	-		CCNA_02459	0.29	-0.0
2,601,706	+		CCNA_02459	0.30	+0.7
2,601,714	-		CCNA_02459	0.30	-1.3
2,601,742	+		CCNA_02459	0.31	-0.7
2,601,788	+		CCNA_02459	0.34	-1.0
2,601,788	+		CCNA_02459	0.34	+1.0
2,601,788	+		CCNA_02459	0.34	-1.9
2,601,788	+		CCNA_02459	0.34	-0.2
2,601,788	+		CCNA_02459	0.34	+0.7
2,601,796	-		CCNA_02459	0.34	-0.9
2,601,798	+				+0.3
2,601,798	+		CCNA_02459	0.34	-0.5
2,601,798	+		CCNA_02459	0.34	+0.3
2,601,798	+		CCNA_02459	0.34	-0.6
2,601,798	+		CCNA_02459	0.34	-0.9
2,601,798	+		CCNA_02459	0.34	-0.7
2,601,798	+		CCNA_02459	0.34	+1.3
2,601,799	+		CCNA_02459	0.34	-1.6
2,601,800	+		CCNA_02459	0.34	-1.8
2,601,806	-		CCNA_02459	0.34	-0.9
2,601,806	-		CCNA_02459	0.34	-0.3
2,601,806	-		CCNA_02459	0.34	+0.7
2,601,806	-		CCNA_02459	0.34	+0.3
2,601,806	-		CCNA_02459	0.34	-0.5
2,601,812	-		CCNA_02459	0.35	-1.0
2,601,823	+		CCNA_02459	0.35	-1.3
2,601,823	+		CCNA_02459	0.35	-0.0
2,601,865	-		CCNA_02459	0.37	-0.9
2,601,865	-		CCNA_02459	0.37	-1.4
2,601,909	-		CCNA_02459	0.39	-0.7
2,601,938	-		CCNA_02459	0.41	+0.7
2,601,956	-		CCNA_02459	0.41	+1.3
2,601,998	+		CCNA_02459	0.43	-0.3
2,602,045	+		CCNA_02459	0.46	-0.3