Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01716

Experiment: PYE with nitrate 100 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_01714 and CCNA_01715 are separated by 105 nucleotidesCCNA_01715 and CCNA_01716 are separated by 36 nucleotidesCCNA_01716 and CCNA_01717 are separated by 12 nucleotidesCCNA_01717 and CCNA_01718 overlap by 1 nucleotidesCCNA_01718 and CCNA_01719 overlap by 4 nucleotides CCNA_01714: CCNA_01714 - Spx/MgsR-related protein, at 1,845,426 to 1,845,773 _01714 CCNA_01715: CCNA_01715 - GPH-family phosphatase, at 1,845,879 to 1,846,565 _01715 CCNA_01716: CCNA_01716 - hypothetical protein, at 1,846,602 to 1,846,787 _01716 CCNA_01717: CCNA_01717 - hypothetical protein, at 1,846,800 to 1,847,210 _01717 CCNA_01718: CCNA_01718 - RNA polymerase ECF sigma factor, at 1,847,210 to 1,847,725 _01718 CCNA_01719: CCNA_01719 - hypothetical protein, at 1,847,722 to 1,848,030 _01719 Position (kb) 1846 1847Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1845.623 kb on + strand, within CCNA_01714at 1845.705 kb on + strand, within CCNA_01714at 1845.705 kb on + strand, within CCNA_01714at 1845.706 kb on + strand, within CCNA_01714at 1845.706 kb on + strand, within CCNA_01714at 1845.706 kb on + strand, within CCNA_01714at 1845.706 kb on + strand, within CCNA_01714at 1845.706 kb on + strand, within CCNA_01714at 1845.713 kb on - strand, within CCNA_01714at 1845.713 kb on - strand, within CCNA_01714at 1845.714 kb on - strand, within CCNA_01714at 1845.782 kb on + strandat 1845.841 kb on + strandat 1845.853 kb on + strandat 1845.874 kb on + strandat 1845.882 kb on - strandat 1845.900 kb on + strandat 1845.934 kb on + strandat 1845.977 kb on - strand, within CCNA_01715at 1846.069 kb on + strand, within CCNA_01715at 1846.077 kb on - strand, within CCNA_01715at 1846.077 kb on - strand, within CCNA_01715at 1846.141 kb on - strand, within CCNA_01715at 1846.158 kb on + strand, within CCNA_01715at 1846.166 kb on + strand, within CCNA_01715at 1846.187 kb on + strand, within CCNA_01715at 1846.267 kb on + strand, within CCNA_01715at 1846.299 kb on - strand, within CCNA_01715at 1846.300 kb on - strand, within CCNA_01715at 1846.316 kb on + strand, within CCNA_01715at 1846.343 kb on + strand, within CCNA_01715at 1846.426 kb on + strand, within CCNA_01715at 1846.715 kb on + strand, within CCNA_01716at 1846.723 kb on - strand, within CCNA_01716at 1846.775 kb on - strandat 1846.800 kb on + strandat 1846.817 kb on + strandat 1846.866 kb on + strand, within CCNA_01717at 1846.866 kb on + strand, within CCNA_01717at 1846.874 kb on - strand, within CCNA_01717at 1846.902 kb on + strand, within CCNA_01717at 1846.903 kb on + strand, within CCNA_01717at 1846.903 kb on + strand, within CCNA_01717at 1846.903 kb on + strand, within CCNA_01717at 1846.903 kb on + strand, within CCNA_01717at 1846.910 kb on - strand, within CCNA_01717at 1846.911 kb on - strand, within CCNA_01717at 1846.911 kb on - strand, within CCNA_01717at 1846.913 kb on + strand, within CCNA_01717at 1846.913 kb on + strand, within CCNA_01717at 1846.913 kb on + strand, within CCNA_01717at 1846.928 kb on - strand, within CCNA_01717at 1846.956 kb on + strand, within CCNA_01717at 1846.956 kb on + strand, within CCNA_01717at 1846.956 kb on + strand, within CCNA_01717at 1846.956 kb on + strand, within CCNA_01717at 1846.956 kb on + strand, within CCNA_01717at 1847.016 kb on + strand, within CCNA_01717at 1847.046 kb on - strand, within CCNA_01717at 1847.102 kb on + strand, within CCNA_01717at 1847.115 kb on + strand, within CCNA_01717at 1847.183 kb on + strandat 1847.224 kb on + strandat 1847.224 kb on + strandat 1847.232 kb on - strandat 1847.266 kb on + strand, within CCNA_01718at 1847.349 kb on + strand, within CCNA_01718at 1847.410 kb on + strand, within CCNA_01718at 1847.410 kb on + strand, within CCNA_01718at 1847.421 kb on - strand, within CCNA_01718at 1847.434 kb on + strand, within CCNA_01718at 1847.436 kb on + strand, within CCNA_01718at 1847.476 kb on + strand, within CCNA_01718at 1847.482 kb on + strand, within CCNA_01718at 1847.511 kb on - strand, within CCNA_01718at 1847.589 kb on + strand, within CCNA_01718at 1847.601 kb on + strandat 1847.601 kb on + strand, within CCNA_01718at 1847.601 kb on + strand, within CCNA_01718at 1847.606 kb on + strand, within CCNA_01718at 1847.612 kb on + strand, within CCNA_01718at 1847.614 kb on - strand, within CCNA_01718at 1847.614 kb on - strand, within CCNA_01718at 1847.616 kb on + strand, within CCNA_01718at 1847.629 kb on + strand, within CCNA_01718at 1847.629 kb on + strand, within CCNA_01718at 1847.651 kb on + strand, within CCNA_01718at 1847.651 kb on + strand, within CCNA_01718at 1847.651 kb on + strand, within CCNA_01718at 1847.651 kb on + strand, within CCNA_01718at 1847.651 kb on + strand, within CCNA_01718at 1847.651 kb on + strand, within CCNA_01718at 1847.651 kb on + strand, within CCNA_01718at 1847.651 kb on + strand, within CCNA_01718at 1847.651 kb on + strand, within CCNA_01718at 1847.651 kb on + strand, within CCNA_01718at 1847.651 kb on + strand, within CCNA_01718at 1847.659 kb on - strand, within CCNA_01718at 1847.659 kb on - strand, within CCNA_01718at 1847.659 kb on - strand, within CCNA_01718at 1847.659 kb on - strand, within CCNA_01718at 1847.659 kb on - strand, within CCNA_01718at 1847.659 kb on - strand, within CCNA_01718at 1847.659 kb on - strand, within CCNA_01718at 1847.659 kb on - strand, within CCNA_01718at 1847.659 kb on - strand, within CCNA_01718at 1847.705 kb on + strandat 1847.713 kb on - strandat 1847.739 kb on + strandat 1847.787 kb on + strand, within CCNA_01719

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with nitrate 100 mM
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1,845,623 + CCNA_01714 0.57 +1.5
1,845,705 + CCNA_01714 0.80 +0.6
1,845,705 + CCNA_01714 0.80 +0.2
1,845,706 + CCNA_01714 0.80 -0.9
1,845,706 + CCNA_01714 0.80 +1.2
1,845,706 + CCNA_01714 0.80 -1.8
1,845,706 + CCNA_01714 0.80 +1.5
1,845,706 + CCNA_01714 0.80 +0.9
1,845,713 - CCNA_01714 0.82 -0.8
1,845,713 - CCNA_01714 0.82 -2.4
1,845,714 - CCNA_01714 0.83 -1.4
1,845,782 + +1.0
1,845,841 + -1.2
1,845,853 + +0.4
1,845,874 + -1.0
1,845,882 - +1.5
1,845,900 + -0.0
1,845,934 + +0.5
1,845,977 - CCNA_01715 0.14 +2.5
1,846,069 + CCNA_01715 0.28 -2.2
1,846,077 - CCNA_01715 0.29 +0.5
1,846,077 - CCNA_01715 0.29 -0.3
1,846,141 - CCNA_01715 0.38 +1.0
1,846,158 + CCNA_01715 0.41 -0.4
1,846,166 + CCNA_01715 0.42 +1.4
1,846,187 + CCNA_01715 0.45 +2.2
1,846,267 + CCNA_01715 0.56 -0.5
1,846,299 - CCNA_01715 0.61 -0.0
1,846,300 - CCNA_01715 0.61 -0.5
1,846,316 + CCNA_01715 0.64 +1.0
1,846,343 + CCNA_01715 0.68 -1.6
1,846,426 + CCNA_01715 0.80 -0.0
1,846,715 + CCNA_01716 0.61 +1.7
1,846,723 - CCNA_01716 0.65 -1.1
1,846,775 - -0.8
1,846,800 + +3.6
1,846,817 + +0.8
1,846,866 + CCNA_01717 0.16 +1.0
1,846,866 + CCNA_01717 0.16 +2.6
1,846,874 - CCNA_01717 0.18 -0.3
1,846,902 + CCNA_01717 0.25 +1.9
1,846,903 + CCNA_01717 0.25 +0.4
1,846,903 + CCNA_01717 0.25 -0.3
1,846,903 + CCNA_01717 0.25 +0.9
1,846,903 + CCNA_01717 0.25 -0.0
1,846,910 - CCNA_01717 0.27 -0.0
1,846,911 - CCNA_01717 0.27 -1.2
1,846,911 - CCNA_01717 0.27 -2.1
1,846,913 + CCNA_01717 0.27 +2.3
1,846,913 + CCNA_01717 0.27 +2.8
1,846,913 + CCNA_01717 0.27 +2.1
1,846,928 - CCNA_01717 0.31 +2.6
1,846,956 + CCNA_01717 0.38 +2.3
1,846,956 + CCNA_01717 0.38 +1.6
1,846,956 + CCNA_01717 0.38 +2.4
1,846,956 + CCNA_01717 0.38 +1.7
1,846,956 + CCNA_01717 0.38 -0.3
1,847,016 + CCNA_01717 0.53 +2.0
1,847,046 - CCNA_01717 0.60 +0.7
1,847,102 + CCNA_01717 0.73 +0.1
1,847,115 + CCNA_01717 0.77 +0.7
1,847,183 + +2.1
1,847,224 + +1.2
1,847,224 + -0.2
1,847,232 - -0.9
1,847,266 + CCNA_01718 0.11 +1.2
1,847,349 + CCNA_01718 0.27 +1.7
1,847,410 + CCNA_01718 0.39 +0.4
1,847,410 + CCNA_01718 0.39 -0.9
1,847,421 - CCNA_01718 0.41 -0.0
1,847,434 + CCNA_01718 0.43 +0.1
1,847,436 + CCNA_01718 0.44 +0.4
1,847,476 + CCNA_01718 0.52 +0.2
1,847,482 + CCNA_01718 0.53 -0.2
1,847,511 - CCNA_01718 0.58 +0.6
1,847,589 + CCNA_01718 0.73 -0.2
1,847,601 + +1.6
1,847,601 + CCNA_01718 0.76 -0.8
1,847,601 + CCNA_01718 0.76 +0.6
1,847,606 + CCNA_01718 0.77 -1.4
1,847,612 + CCNA_01718 0.78 +0.6
1,847,614 - CCNA_01718 0.78 -1.7
1,847,614 - CCNA_01718 0.78 +0.1
1,847,616 + CCNA_01718 0.79 -0.2
1,847,629 + CCNA_01718 0.81 -0.0
1,847,629 + CCNA_01718 0.81 -0.0
1,847,651 + CCNA_01718 0.85 -0.6
1,847,651 + CCNA_01718 0.85 -0.3
1,847,651 + CCNA_01718 0.85 +0.6
1,847,651 + CCNA_01718 0.85 +2.6
1,847,651 + CCNA_01718 0.85 +0.2
1,847,651 + CCNA_01718 0.85 -0.0
1,847,651 + CCNA_01718 0.85 +1.6
1,847,651 + CCNA_01718 0.85 -0.8
1,847,651 + CCNA_01718 0.85 +1.6
1,847,651 + CCNA_01718 0.85 -0.0
1,847,651 + CCNA_01718 0.85 -0.7
1,847,659 - CCNA_01718 0.87 -0.3
1,847,659 - CCNA_01718 0.87 +0.6
1,847,659 - CCNA_01718 0.87 -0.4
1,847,659 - CCNA_01718 0.87 -1.4
1,847,659 - CCNA_01718 0.87 -1.4
1,847,659 - CCNA_01718 0.87 +0.4
1,847,659 - CCNA_01718 0.87 +1.0
1,847,659 - CCNA_01718 0.87 -0.8
1,847,659 - CCNA_01718 0.87 +0.6
1,847,705 + +0.2
1,847,713 - -2.4
1,847,739 + +0.2
1,847,787 + CCNA_01719 0.21 -0.3

Or see this region's nucleotide sequence