Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01473

Experiment: PYE with nitrate 100 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with nitrate 100 mM
1,579,139	+		CCNA_01471	0.67	-1.1
1,579,147	-		CCNA_01471	0.67	-0.7
1,579,192	+		CCNA_01471	0.70	-0.6
1,579,192	+		CCNA_01471	0.70	-0.9
1,579,192	+		CCNA_01471	0.70	+0.7
1,579,192	+		CCNA_01471	0.70	-2.2
1,579,192	+		CCNA_01471	0.70	-0.9
1,579,200	-		CCNA_01471	0.71	+2.4
1,579,200	-		CCNA_01471	0.71	-1.9
1,579,200	-		CCNA_01471	0.71	-1.4
1,579,200	-		CCNA_01471	0.71	+0.4
1,579,227	-		CCNA_01471	0.73	+0.3
1,579,235	-		CCNA_01471	0.73	+0.8
1,579,246	-		CCNA_01471	0.74	+1.4
1,579,291	+		CCNA_01471	0.77	-1.9
1,579,299	-		CCNA_01471	0.77	-0.7
1,579,355	+		CCNA_01471	0.81	+1.0
1,579,362	+		CCNA_01471	0.82	-0.3
1,579,370	-		CCNA_01471	0.82	+1.1
1,579,396	+		CCNA_01471	0.84	+0.4
1,579,398	+		CCNA_01471	0.84	-0.2
1,579,433	+		CCNA_01471	0.86	+1.1
1,579,439	+		CCNA_01471	0.87	-0.8
1,579,451	-		CCNA_01471	0.88	-1.0
1,579,466	-		CCNA_01471	0.89	-0.6
1,579,487	+		CCNA_01471	0.90	+0.6
1,579,502	+				+0.4
1,579,502	+				-0.2
1,579,510	-				+1.4
1,579,530	+				-2.2
1,579,556	+				-0.5
1,579,592	-				-0.4
1,579,594	+				-1.0
1,579,594	+				+0.8
1,579,594	+				-0.9
1,579,594	+				+0.8
1,579,594	+				-1.7
1,579,594	+				+1.4
1,579,594	+				-1.3
1,579,602	-				+1.4
1,579,602	-				-2.0
1,579,668	-				-0.1
1,579,678	+				-2.0
1,579,678	+				-0.9
1,579,686	-		CCNA_01472	0.11	-1.2
1,579,699	+		CCNA_01472	0.13	-1.0
1,579,707	-		CCNA_01472	0.15	-0.6
1,579,759	+		CCNA_01472	0.25	-0.7
1,579,800	+		CCNA_01472	0.33	-1.2
1,579,801	-		CCNA_01472	0.34	-1.9
1,579,813	+		CCNA_01472	0.36	-1.0
1,579,831	+		CCNA_01472	0.40	-2.0
1,579,848	+		CCNA_01472	0.43	-0.4
1,579,884	-		CCNA_01472	0.50	-0.7
1,579,903	+		CCNA_01472	0.54	-2.3
1,579,936	+		CCNA_01472	0.60	-1.0
1,580,006	+		CCNA_01472	0.74	-1.3
1,580,019	-				+1.4
1,580,039	-		CCNA_01472	0.81	-1.7
1,580,045	-		CCNA_01472	0.82	-0.2
1,580,068	-		CCNA_01472	0.87	+1.4
1,580,132	+				+0.9
1,580,140	+				-1.5
1,580,148	-				+1.4
1,580,208	-				+0.4
1,580,247	-				+0.1
1,580,287	-				+0.8
1,580,339	+				+1.4
1,580,429	+		CCNA_01473	0.14	+0.8
1,580,429	+		CCNA_01473	0.14	+0.2
1,580,437	-		CCNA_01473	0.14	+1.7
1,580,437	-		CCNA_01473	0.14	-0.6
1,580,453	-		CCNA_01473	0.15	+1.4
1,580,490	+		CCNA_01473	0.17	-0.9
1,580,518	-		CCNA_01473	0.18	+0.4
1,580,545	+		CCNA_01473	0.19	-1.6
1,580,564	-		CCNA_01473	0.20	+0.4
1,580,601	+		CCNA_01473	0.22	+0.1
1,580,639	-		CCNA_01473	0.23	+0.6
1,580,723	-		CCNA_01473	0.27	-0.7
1,580,766	+		CCNA_01473	0.29	-1.2
1,580,788	+		CCNA_01473	0.30	-1.5
1,580,794	+		CCNA_01473	0.31	+0.3
1,580,930	+		CCNA_01473	0.37	+0.7
1,580,986	+		CCNA_01473	0.39	-1.5
1,581,003	+		CCNA_01473	0.40	+0.1
1,581,061	-		CCNA_01473	0.43	+0.4
1,581,071	+		CCNA_01473	0.43	+0.8
1,581,119	+		CCNA_01473	0.45	+0.1
1,581,124	-		CCNA_01473	0.46	-2.2
1,581,127	-		CCNA_01473	0.46	-0.4
1,581,207	+		CCNA_01473	0.50	-0.4
1,581,237	+		CCNA_01473	0.51	+0.0
1,581,268	+		CCNA_01473	0.52	-1.2
1,581,268	+		CCNA_01473	0.52	+0.8
1,581,303	+		CCNA_01473	0.54	-0.4
1,581,311	+		CCNA_01473	0.54	-2.4
1,581,311	+		CCNA_01473	0.54	+0.2
1,581,311	+		CCNA_01473	0.54	+0.1
1,581,311	-		CCNA_01473	0.54	-1.2
1,581,316	+		CCNA_01473	0.55	+0.7
1,581,335	+				+3.4
1,581,335	+		CCNA_01473	0.55	-0.2
1,581,343	-		CCNA_01473	0.56	-0.5
1,581,343	-		CCNA_01473	0.56	-0.6
1,581,361	-		CCNA_01473	0.57	-0.6
1,581,414	+		CCNA_01473	0.59	+1.1
1,581,414	+		CCNA_01473	0.59	-0.8
1,581,414	+		CCNA_01473	0.59	-0.0
1,581,414	+		CCNA_01473	0.59	+1.6
1,581,414	+		CCNA_01473	0.59	-1.2
1,581,422	-		CCNA_01473	0.59	-0.4
1,581,422	-		CCNA_01473	0.59	+1.4
1,581,422	-		CCNA_01473	0.59	-0.6
1,581,422	-				+4.0
1,581,422	-		CCNA_01473	0.59	-0.2
1,581,422	-		CCNA_01473	0.59	+0.8
1,581,422	-		CCNA_01473	0.59	-0.4
1,581,422	-		CCNA_01473	0.59	-1.2
1,581,422	-		CCNA_01473	0.59	+0.1
1,581,428	+		CCNA_01473	0.60	-0.6
1,581,436	-		CCNA_01473	0.60	-0.6
1,581,455	-		CCNA_01473	0.61	+0.8
1,581,471	+		CCNA_01473	0.62	+0.5
1,581,491	+		CCNA_01473	0.63	-0.2
1,581,550	+		CCNA_01473	0.65	-0.5
1,581,597	+		CCNA_01473	0.67	-0.7
1,581,597	+		CCNA_01473	0.67	-0.1
1,581,597	+		CCNA_01473	0.67	+0.7
1,581,602	+		CCNA_01473	0.68	-0.9
1,581,618	+		CCNA_01473	0.68	+0.3
1,581,621	+		CCNA_01473	0.69	+0.4
1,581,660	+		CCNA_01473	0.70	-0.9
1,581,660	+		CCNA_01473	0.70	+1.4
1,581,660	+		CCNA_01473	0.70	+1.8
1,581,660	+		CCNA_01473	0.70	+0.7
1,581,660	+		CCNA_01473	0.70	+0.1
1,581,660	+		CCNA_01473	0.70	+0.8
1,581,663	-		CCNA_01473	0.70	-0.9
1,581,700	+		CCNA_01473	0.72	-0.2
1,581,700	+		CCNA_01473	0.72	-0.2
1,581,714	+		CCNA_01473	0.73	-1.9
1,581,757	+		CCNA_01473	0.75	-2.1
1,581,759	+		CCNA_01473	0.75	+0.4
1,581,759	+		CCNA_01473	0.75	+0.5
1,581,825	+		CCNA_01473	0.78	+0.1
1,581,825	+		CCNA_01473	0.78	-0.4
1,581,877	+		CCNA_01473	0.80	-1.2
1,581,905	+		CCNA_01473	0.82	-0.9
1,581,911	-		CCNA_01473	0.82	+0.8
1,581,911	-		CCNA_01473	0.82	-0.6
1,581,913	-		CCNA_01473	0.82	-0.2
1,581,913	-		CCNA_01473	0.82	-0.2
1,581,963	+		CCNA_01473	0.84	-0.4
1,581,963	-		CCNA_01473	0.84	+0.8
1,581,999	+		CCNA_01473	0.86	+1.4
1,581,999	+		CCNA_01473	0.86	+0.5
1,582,002	-		CCNA_01473	0.86	+0.7
1,582,004	+		CCNA_01473	0.86	+0.3
1,582,004	+		CCNA_01473	0.86	-1.6
1,582,004	+		CCNA_01473	0.86	-0.4
1,582,004	+		CCNA_01473	0.86	-1.7
1,582,004	+		CCNA_01473	0.86	-0.6
1,582,012	-		CCNA_01473	0.87	+0.3
1,582,012	-		CCNA_01473	0.87	+0.4
1,582,012	-		CCNA_01473	0.87	+0.4
1,582,012	-		CCNA_01473	0.87	-1.8
1,582,012	-		CCNA_01473	0.87	-2.0
1,582,012	-		CCNA_01473	0.87	-0.9
1,582,026	-		CCNA_01473	0.87	+0.8
1,582,048	-		CCNA_01473	0.88	-0.7
1,582,050	+		CCNA_01473	0.88	-1.8
1,582,050	+		CCNA_01473	0.88	+1.2
1,582,050	+		CCNA_01473	0.88	-0.2
1,582,055	+		CCNA_01473	0.89	-1.4
1,582,058	-		CCNA_01473	0.89	+0.4
1,582,058	-		CCNA_01473	0.89	+0.8
1,582,058	-		CCNA_01473	0.89	-1.2
1,582,106	-				-1.0
1,582,177	-				+0.4
1,582,177	-				-0.9
1,582,199	+				-0.2
1,582,207	-				+2.6
1,582,252	+				-0.2
1,582,257	+				-2.0
1,582,265	-				+0.1
1,582,270	-				-0.6
1,582,311	+				-0.6
1,582,332	+		CCNA_01474	0.18	+0.8
1,582,337	+		CCNA_01474	0.21	-1.7
1,582,351	+		CCNA_01474	0.30	-0.9
1,582,393	-		CCNA_01474	0.55	-1.2
1,582,399	+		CCNA_01474	0.58	-0.6
1,582,425	+		CCNA_01474	0.74	-1.8
1,582,597	-				+0.1
1,582,659	+				-1.2
1,582,659	+				-1.8
1,582,674	-		CCNA_01475	0.12	+0.1
1,582,679	+		CCNA_01475	0.12	-0.4
1,582,687	-		CCNA_01475	0.14	+1.4
1,582,702	-		CCNA_01475	0.16	+1.4
1,582,735	-		CCNA_01475	0.21	+0.6
1,582,746	-				+0.8
1,582,750	-		CCNA_01475	0.23	-1.4
1,582,796	+		CCNA_01475	0.31	-0.6
1,582,804	-		CCNA_01475	0.32	-0.2
1,582,806	+				+2.4
1,582,814	-		CCNA_01475	0.33	+1.4
1,582,823	+		CCNA_01475	0.35	+1.4
1,582,827	-		CCNA_01475	0.35	+0.8
1,582,856	+		CCNA_01475	0.40	-1.8
1,582,864	+		CCNA_01475	0.41	+0.6
1,582,872	-		CCNA_01475	0.42	+2.4
1,582,874	-		CCNA_01475	0.43	-0.4
1,582,892	+		CCNA_01475	0.45	-1.3
1,582,918	-		CCNA_01475	0.49	-0.6
1,582,919	+		CCNA_01475	0.50	-1.7
1,582,947	+		CCNA_01475	0.54	-0.6
1,582,976	+		CCNA_01475	0.58	+1.3
1,582,981	+		CCNA_01475	0.59	-0.3
1,582,989	-		CCNA_01475	0.60	+1.4
1,582,998	+		CCNA_01475	0.62	-0.2
1,582,998	+		CCNA_01475	0.62	+0.7
1,583,005	+		CCNA_01475	0.63	-0.8
1,583,006	-		CCNA_01475	0.63	-0.4
1,583,006	-		CCNA_01475	0.63	+1.1
1,583,015	+		CCNA_01475	0.64	-0.4
1,583,023	-		CCNA_01475	0.66	-0.3
1,583,023	-		CCNA_01475	0.66	+0.8
1,583,047	+		CCNA_01475	0.69	+1.1
1,583,053	+		CCNA_01475	0.70	-0.0
1,583,070	+		CCNA_01475	0.73	-1.1
1,583,077	-		CCNA_01475	0.74	-0.4
1,583,079	+		CCNA_01475	0.74	-1.3
1,583,132	+		CCNA_01475	0.83	-1.0
1,583,165	+		CCNA_01475	0.88	-0.3
1,583,194	-				-1.8
1,583,205	-				-0.2
1,583,205	-				-0.9
1,583,238	+				+0.6