Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01446

Experiment: PYE with nitrate 100 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with nitrate 100 mM
1,557,256	-		CCNA_01444	0.83	+1.1
1,557,349	-		CCNA_01444	0.87	+2.8
1,557,351	+		CCNA_01444	0.87	+1.8
1,557,359	-		CCNA_01444	0.88	+1.3
1,557,366	+		CCNA_01444	0.88	+0.7
1,557,374	-		CCNA_01444	0.88	+1.2
1,557,462	+				-0.9
1,557,470	-				+0.1
1,557,470	-				-0.2
1,557,471	-				+0.5
1,557,472	+				+0.1
1,557,490	-				-1.3
1,557,510	+				+0.6
1,557,510	+				+1.4
1,557,518	-				-0.9
1,557,518	-				+0.1
1,557,518	-				-0.4
1,557,567	+				+0.4
1,557,598	-				-0.2
1,557,608	+				-0.6
1,557,610	-				-0.1
1,557,611	-				-0.0
1,557,624	+				-0.6
1,557,656	+				-0.2
1,557,684	-				+0.3
1,557,738	-				+0.4
1,557,738	-				-0.8
1,557,796	-		CCNA_01445	0.22	+0.1
1,557,829	+		CCNA_01445	0.30	-2.3
1,557,840	+		CCNA_01445	0.32	+2.8
1,557,840	+		CCNA_01445	0.32	+0.6
1,557,840	+		CCNA_01445	0.32	+0.6
1,557,840	+		CCNA_01445	0.32	+1.3
1,557,840	+		CCNA_01445	0.32	-1.3
1,557,840	+		CCNA_01445	0.32	-2.7
1,557,840	+		CCNA_01445	0.32	-0.6
1,557,840	+		CCNA_01445	0.32	-0.5
1,557,848	-		CCNA_01445	0.34	-1.9
1,557,848	-		CCNA_01445	0.34	+1.4
1,557,848	-		CCNA_01445	0.34	+0.8
1,557,848	-		CCNA_01445	0.34	-0.2
1,557,887	+		CCNA_01445	0.43	-0.4
1,557,915	+		CCNA_01445	0.49	+0.3
1,557,923	-		CCNA_01445	0.51	-0.9
1,557,982	+		CCNA_01445	0.65	+0.7
1,557,984	+		CCNA_01445	0.65	+0.2
1,558,050	-		CCNA_01445	0.80	-0.4
1,558,075	+		CCNA_01445	0.86	+0.2
1,558,081	+		CCNA_01445	0.87	+1.8
1,558,096	+				+1.5
1,558,096	+				+1.1
1,558,114	-				+0.4
1,558,123	+				+2.5
1,558,173	+				+1.8
1,558,248	-				+0.1
1,558,290	-				+0.1
1,558,367	-				-1.1
1,558,381	+		CCNA_01446	0.11	-0.1
1,558,389	-		CCNA_01446	0.12	+0.8
1,558,423	+		CCNA_01446	0.14	-0.2
1,558,434	+		CCNA_01446	0.15	+1.7
1,558,457	+		CCNA_01446	0.17	-0.2
1,558,465	-		CCNA_01446	0.18	+2.0
1,558,473	+		CCNA_01446	0.19	+0.6
1,558,473	+				+1.4
1,558,474	+		CCNA_01446	0.19	+1.0
1,558,482	-		CCNA_01446	0.19	-0.2
1,558,482	-		CCNA_01446	0.19	+0.1
1,558,573	+		CCNA_01446	0.27	-0.9
1,558,576	-		CCNA_01446	0.27	-0.9
1,558,584	+		CCNA_01446	0.28	+0.9
1,558,587	-		CCNA_01446	0.28	+1.0
1,558,588	+		CCNA_01446	0.28	-0.2
1,558,618	-		CCNA_01446	0.30	-1.3
1,558,620	+		CCNA_01446	0.31	+1.2
1,558,623	-		CCNA_01446	0.31	-0.6
1,558,694	+		CCNA_01446	0.37	-0.0
1,558,704	+		CCNA_01446	0.38	+0.4
1,558,723	+		CCNA_01446	0.39	+1.8
1,558,731	-		CCNA_01446	0.40	-0.6
1,558,731	-		CCNA_01446	0.40	+0.4
1,558,761	+		CCNA_01446	0.42	+1.2
1,558,763	-		CCNA_01446	0.42	-1.2
1,558,790	+		CCNA_01446	0.45	+1.6
1,558,795	+		CCNA_01446	0.45	+1.7
1,558,849	-		CCNA_01446	0.49	+1.1
1,558,922	+		CCNA_01446	0.55	+1.8
1,558,956	+		CCNA_01446	0.58	+1.4
1,558,956	+		CCNA_01446	0.58	+0.5
1,558,956	+		CCNA_01446	0.58	+1.4
1,558,956	+		CCNA_01446	0.58	-0.3
1,558,956	+		CCNA_01446	0.58	-0.3
1,558,965	-		CCNA_01446	0.59	+0.8
1,559,013	+		CCNA_01446	0.63	+0.8
1,559,016	-		CCNA_01446	0.63	-1.3
1,559,021	-		CCNA_01446	0.63	-0.8
1,559,021	-		CCNA_01446	0.63	-0.2
1,559,040	+		CCNA_01446	0.65	+0.5
1,559,048	-		CCNA_01446	0.66	+1.4
1,559,061	+		CCNA_01446	0.67	+1.7
1,559,092	+		CCNA_01446	0.69	+0.7
1,559,092	+		CCNA_01446	0.69	-0.3
1,559,100	-		CCNA_01446	0.70	+0.1
1,559,100	-		CCNA_01446	0.70	+0.1
1,559,100	-		CCNA_01446	0.70	+0.4
1,559,102	+		CCNA_01446	0.70	+1.0
1,559,110	-		CCNA_01446	0.71	+0.1
1,559,112	-		CCNA_01446	0.71	-0.6
1,559,114	+		CCNA_01446	0.71	+1.1
1,559,142	-		CCNA_01446	0.73	+1.4
1,559,160	+		CCNA_01446	0.75	+2.3
1,559,160	+		CCNA_01446	0.75	+1.8
1,559,182	+		CCNA_01446	0.77	+1.6
1,559,190	-		CCNA_01446	0.77	-0.9
1,559,190	-		CCNA_01446	0.77	+2.0
1,559,190	-		CCNA_01446	0.77	+0.1
1,559,206	+		CCNA_01446	0.79	+1.4
1,559,206	+		CCNA_01446	0.79	-1.2
1,559,212	+		CCNA_01446	0.79	+1.3
1,559,222	+		CCNA_01446	0.80	+2.6
1,559,255	+		CCNA_01446	0.83	+1.6
1,559,260	+		CCNA_01446	0.83	+0.5
1,559,301	-		CCNA_01446	0.86	-2.6
1,559,318	+		CCNA_01446	0.88	+1.4
1,559,331	-		CCNA_01446	0.89	-1.1
1,559,338	+		CCNA_01446	0.89	+2.2
1,559,339	+		CCNA_01446	0.90	+2.1
1,559,354	+				+0.1
1,559,358	+				+2.3
1,559,358	+				+0.8
1,559,366	-				+0.8
1,559,366	-				+1.4
1,559,371	-				-0.2
1,559,375	+				+1.2
1,559,386	+				+1.9
1,559,428	+				+1.7
1,559,433	+				+2.3
1,559,439	+				+2.7
1,559,441	-				-1.3
1,559,450	+				+1.7
1,559,450	+				+2.2
1,559,455	+				+2.4
1,559,460	+				+1.7
1,559,460	+				-0.6
1,559,460	+				+1.4
1,559,460	+				+2.4
1,559,463	-				+1.4
1,559,468	-				+0.1
1,559,468	-				+2.7
1,559,468	-				+2.4
1,559,468	-				-1.9
1,559,474	+				+1.8
1,559,474	+				+1.2
1,559,576	-				+1.8
1,559,626	+				+2.4
1,559,659	+		CCNA_01447	0.12	+2.8
1,559,739	+		CCNA_01447	0.18	+2.1
1,559,739	+		CCNA_01447	0.18	+2.9
1,559,760	+		CCNA_01447	0.20	+3.3
1,559,773	+		CCNA_01447	0.21	+0.1
1,559,859	+		CCNA_01447	0.28	+1.9
1,559,884	-		CCNA_01447	0.30	-0.5
1,559,886	+		CCNA_01447	0.30	+1.7
1,560,052	+		CCNA_01447	0.43	+1.5
1,560,052	+		CCNA_01447	0.43	+1.5
1,560,058	+		CCNA_01447	0.43	+1.4
1,560,058	+		CCNA_01447	0.43	-0.1
1,560,058	+		CCNA_01447	0.43	+2.2
1,560,058	+		CCNA_01447	0.43	+1.4
1,560,060	-		CCNA_01447	0.43	-0.6
1,560,060	-		CCNA_01447	0.43	+0.7
1,560,060	-		CCNA_01447	0.43	+1.1
1,560,063	+		CCNA_01447	0.43	+1.9
1,560,066	-		CCNA_01447	0.44	+1.8
1,560,066	-		CCNA_01447	0.44	+2.4
1,560,067	-		CCNA_01447	0.44	+1.4
1,560,194	+		CCNA_01447	0.54	-1.3
1,560,209	+		CCNA_01447	0.55	+1.5
1,560,219	+		CCNA_01447	0.56	+2.0
1,560,266	+		CCNA_01447	0.59	+1.5
1,560,267	+		CCNA_01447	0.59	+0.1
1,560,406	-		CCNA_01447	0.70	-0.4
1,560,415	+		CCNA_01447	0.71	+1.5
1,560,459	+		CCNA_01447	0.74	+1.3
1,560,459	+		CCNA_01447	0.74	+2.7
1,560,459	+		CCNA_01447	0.74	+2.0
1,560,459	+		CCNA_01447	0.74	+1.5