Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01139

Experiment: PYE with nitrate 100 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with nitrate 100 mM
1,240,477	-		CCNA_01137	0.25	-1.7
1,240,498	+		CCNA_01137	0.29	+0.6
1,240,506	-		CCNA_01137	0.30	-0.1
1,240,506	-		CCNA_01137	0.30	+0.2
1,240,528	+		CCNA_01137	0.35	-0.1
1,240,570	-		CCNA_01137	0.43	-0.5
1,240,572	-		CCNA_01137	0.43	-0.3
1,240,573	+		CCNA_01137	0.43	-2.0
1,240,593	-		CCNA_01137	0.47	+1.0
1,240,625	+		CCNA_01137	0.53	-0.6
1,240,659	+		CCNA_01137	0.60	-1.0
1,240,667	-		CCNA_01137	0.61	-0.8
1,240,683	+		CCNA_01137	0.64	+0.2
1,240,691	-		CCNA_01137	0.66	-1.1
1,240,691	-		CCNA_01137	0.66	-1.4
1,240,691	-		CCNA_01137	0.66	+0.9
1,240,700	-		CCNA_01137	0.68	+1.1
1,240,708	+		CCNA_01137	0.69	+0.6
1,240,741	+		CCNA_01137	0.75	+1.4
1,240,770	-		CCNA_01137	0.81	-1.1
1,240,770	-		CCNA_01137	0.81	-1.1
1,240,800	-		CCNA_01137	0.87	-1.1
1,240,809	-		CCNA_01137	0.89	-0.1
1,240,809	-		CCNA_01137	0.89	+0.2
1,240,840	-				-1.8
1,240,841	-				-1.3
1,240,853	+				+1.2
1,240,853	+				-1.5
1,240,856	-				+0.9
1,240,856	-				-0.5
1,240,861	-				+1.2
1,240,874	-				+0.2
1,240,905	+				+0.4
1,240,920	-				-2.6
1,240,922	+				-1.2
1,240,942	-				-2.3
1,240,969	+				+1.2
1,241,033	-		CCNA_01138	0.25	-0.1
1,241,069	-		CCNA_01138	0.35	+0.2
1,241,140	-		CCNA_01138	0.54	-2.1
1,241,140	-		CCNA_01138	0.54	-1.1
1,241,147	+		CCNA_01138	0.56	+0.6
1,241,147	+		CCNA_01138	0.56	-1.5
1,241,153	-		CCNA_01138	0.57	-1.3
1,241,155	-		CCNA_01138	0.58	-1.0
1,241,160	+		CCNA_01138	0.59	+1.2
1,241,192	-		CCNA_01138	0.67	-0.1
1,241,212	-		CCNA_01138	0.73	-1.5
1,241,218	-		CCNA_01138	0.74	+0.4
1,241,225	+		CCNA_01138	0.76	-0.8
1,241,241	-		CCNA_01138	0.80	-0.4
1,241,241	-		CCNA_01138	0.80	-1.5
1,241,249	-		CCNA_01138	0.83	-1.7
1,241,308	+				-1.7
1,241,321	+				-1.9
1,241,331	-				+0.6
1,241,357	+				-0.9
1,241,375	+				-1.5
1,241,375	-				+1.2
1,241,400	+				+0.7
1,241,496	-				-2.3
1,241,540	-				-2.0
1,241,542	-				+1.2
1,241,581	+				+1.0
1,241,592	+				+1.5
1,241,612	+				+0.6
1,241,612	+		CCNA_01139	0.11	+0.0
1,241,612	+		CCNA_01139	0.11	+1.3
1,241,618	+		CCNA_01139	0.11	+0.7
1,241,618	+		CCNA_01139	0.11	+1.9
1,241,618	+		CCNA_01139	0.11	+0.7
1,241,620	-		CCNA_01139	0.11	+0.6
1,241,625	+		CCNA_01139	0.11	+1.0
1,241,626	-		CCNA_01139	0.11	+0.5
1,241,626	-		CCNA_01139	0.11	+1.8
1,241,626	-		CCNA_01139	0.11	-0.6
1,241,626	-		CCNA_01139	0.11	-1.3
1,241,626	-		CCNA_01139	0.11	-1.0
1,241,626	-		CCNA_01139	0.11	+0.6
1,241,659	+		CCNA_01139	0.13	+2.4
1,241,677	-		CCNA_01139	0.14	+1.9
1,241,752	-		CCNA_01139	0.18	+1.2
1,241,752	-		CCNA_01139	0.18	+0.4
1,241,759	-		CCNA_01139	0.19	+0.2
1,241,765	-		CCNA_01139	0.19	-0.6
1,241,778	+		CCNA_01139	0.20	+1.3
1,241,800	+		CCNA_01139	0.21	-0.6
1,241,822	-		CCNA_01139	0.22	-1.0
1,241,883	+		CCNA_01139	0.25	+1.8
1,241,884	+		CCNA_01139	0.26	+0.3
1,241,888	+		CCNA_01139	0.26	+1.2
1,241,891	-		CCNA_01139	0.26	-1.0
1,241,907	+		CCNA_01139	0.27	+0.2
1,241,908	-		CCNA_01139	0.27	-0.8
1,241,918	+		CCNA_01139	0.27	+0.6
1,241,984	+		CCNA_01139	0.31	-0.7
1,241,988	-		CCNA_01139	0.31	+1.6
1,241,992	-		CCNA_01139	0.31	+2.2
1,241,998	+		CCNA_01139	0.32	+0.7
1,242,004	-		CCNA_01139	0.32	+1.2
1,242,006	-		CCNA_01139	0.32	+1.2
1,242,041	+		CCNA_01139	0.34	+0.3
1,242,041	+		CCNA_01139	0.34	+0.7
1,242,049	-		CCNA_01139	0.35	-2.2
1,242,078	+		CCNA_01139	0.36	+0.8
1,242,078	+		CCNA_01139	0.36	-0.5
1,242,086	-		CCNA_01139	0.37	-0.6
1,242,086	-		CCNA_01139	0.37	+0.6
1,242,091	-		CCNA_01139	0.37	+0.2
1,242,110	+		CCNA_01139	0.38	+0.1
1,242,110	+		CCNA_01139	0.38	+0.6
1,242,110	+		CCNA_01139	0.38	+1.0
1,242,123	+		CCNA_01139	0.39	+0.1
1,242,154	-		CCNA_01139	0.40	-1.6
1,242,200	+		CCNA_01139	0.43	+0.0
1,242,208	-		CCNA_01139	0.43	-0.1
1,242,208	-		CCNA_01139	0.43	-0.8
1,242,234	-		CCNA_01139	0.45	+1.2
1,242,237	+		CCNA_01139	0.45	+0.8
1,242,245	-		CCNA_01139	0.45	+0.6
1,242,295	-		CCNA_01139	0.48	+1.2
1,242,298	-		CCNA_01139	0.48	-0.6
1,242,311	-		CCNA_01139	0.49	-0.8
1,242,337	-		CCNA_01139	0.50	-0.8
1,242,343	+		CCNA_01139	0.51	+0.7
1,242,377	+		CCNA_01139	0.53	-0.7
1,242,385	-		CCNA_01139	0.53	-2.5
1,242,421	+		CCNA_01139	0.55	+1.9
1,242,440	+		CCNA_01139	0.56	+0.6
1,242,440	+		CCNA_01139	0.56	+0.5
1,242,497	+		CCNA_01139	0.59	+0.7
1,242,550	-		CCNA_01139	0.62	+2.2
1,242,572	+		CCNA_01139	0.63	+0.9
1,242,635	-		CCNA_01139	0.67	-0.1
1,242,674	+		CCNA_01139	0.69	+0.1
1,242,685	+		CCNA_01139	0.69	+2.0
1,242,685	+		CCNA_01139	0.69	+1.6
1,242,693	-		CCNA_01139	0.70	-0.7
1,242,700	+		CCNA_01139	0.70	+0.2
1,242,758	+		CCNA_01139	0.73	+2.5
1,242,758	+		CCNA_01139	0.73	+0.9
1,242,807	+		CCNA_01139	0.76	+1.6
1,242,826	+		CCNA_01139	0.77	+1.6
1,242,900	+		CCNA_01139	0.81	+1.0
1,242,900	+		CCNA_01139	0.81	+1.9
1,242,900	+		CCNA_01139	0.81	+2.1
1,242,900	+		CCNA_01139	0.81	+2.0
1,242,905	+		CCNA_01139	0.82	+1.7
1,242,908	-		CCNA_01139	0.82	-1.7
1,242,908	-		CCNA_01139	0.82	+1.2
1,242,913	-		CCNA_01139	0.82	+1.6
1,242,913	-		CCNA_01139	0.82	-0.4
1,242,913	-		CCNA_01139	0.82	+1.2
1,242,913	-		CCNA_01139	0.82	-1.3
1,242,944	-		CCNA_01139	0.84	-1.6
1,242,958	+		CCNA_01139	0.84	+1.5
1,242,977	+		CCNA_01139	0.85	+2.0
1,242,984	+				+1.2
1,243,031	+		CCNA_01139	0.88	+2.2
1,243,036	+		CCNA_01139	0.89	+2.0
1,243,050	+		CCNA_01139	0.89	+1.6
1,243,100	+				+1.7
1,243,153	+				+2.1
1,243,153	+				+1.8
1,243,158	+				+2.0
1,243,158	+				+2.0
1,243,166	-				-0.1
1,243,170	+				+1.9
1,243,177	-				-2.1
1,243,188	+				+2.3
1,243,188	+				+2.1
1,243,235	+				+2.0
1,243,235	+				+1.9
1,243,236	+				+2.0
1,243,236	+				+1.7
1,243,236	+				+2.2
1,243,236	+				+2.5
1,243,236	+				+1.4
1,243,236	+				+2.3
1,243,236	+				+2.0
1,243,244	-				-0.4
1,243,244	-				+0.6
1,243,246	+				+1.4
1,243,246	+				+1.9
1,243,246	+				+1.8
1,243,254	-				+2.2
1,243,254	-				-0.4
1,243,254	-				-0.8
1,243,289	+				+0.7
1,243,332	+				+0.4
1,243,332	+				+0.8
1,243,332	+				+1.2
1,243,340	-				+1.2
1,243,340	-				+1.2
1,243,347	+				+0.7
1,243,392	+				-1.5
1,243,397	+				-0.2
1,243,400	-				-0.1
1,243,400	-				-2.7
1,243,456	-		CCNA_01140	0.10	+1.5
1,243,477	+		CCNA_01140	0.12	+1.9
1,243,490	+		CCNA_01140	0.12	-0.4
1,243,516	-		CCNA_01140	0.14	+1.9
1,243,552	+		CCNA_01140	0.16	-0.5
1,243,585	-		CCNA_01140	0.18	-0.8
1,243,585	-		CCNA_01140	0.18	-0.6
1,243,630	+		CCNA_01140	0.21	-1.0
1,243,630	+		CCNA_01140	0.21	+0.6
1,243,638	-		CCNA_01140	0.22	-0.3
1,243,638	-		CCNA_01140	0.22	+1.4
1,243,643	-		CCNA_01140	0.22	-1.8
1,243,671	-				+0.6
1,243,672	-		CCNA_01140	0.24	+0.7
1,243,737	+		CCNA_01140	0.28	+0.0
1,243,745	-		CCNA_01140	0.28	-1.2
1,243,755	-		CCNA_01140	0.29	+0.3
1,243,810	-		CCNA_01140	0.32	-0.7
1,243,828	+		CCNA_01140	0.33	-1.1
1,243,828	+		CCNA_01140	0.33	-0.3
1,243,828	+		CCNA_01140	0.33	-2.1
1,243,828	+		CCNA_01140	0.33	-1.8
1,243,828	+		CCNA_01140	0.33	-1.4
1,243,828	+		CCNA_01140	0.33	+0.1
1,243,828	+		CCNA_01140	0.33	+0.2
1,243,836	-		CCNA_01140	0.34	-0.5
1,243,836	-		CCNA_01140	0.34	-1.3
1,243,836	-		CCNA_01140	0.34	+0.7
1,243,861	-		CCNA_01140	0.35	-0.6
1,243,867	-		CCNA_01140	0.36	+0.2
1,243,896	+		CCNA_01140	0.38	-0.1
1,243,904	-		CCNA_01140	0.38	+0.2
1,243,914	-		CCNA_01140	0.39	-0.8
1,243,921	-		CCNA_01140	0.39	-0.7
1,243,921	-		CCNA_01140	0.39	-1.0
1,243,936	-		CCNA_01140	0.40	-0.4
1,243,961	-		CCNA_01140	0.42	-0.4
1,243,961	-		CCNA_01140	0.42	+2.1
1,243,972	-		CCNA_01140	0.42	-1.8
1,243,979	-		CCNA_01140	0.43	-0.3
1,243,980	-		CCNA_01140	0.43	-1.0
1,244,072	+		CCNA_01140	0.49	+0.7
1,244,072	+		CCNA_01140	0.49	-1.1
1,244,085	-		CCNA_01140	0.49	+0.4
1,244,085	-		CCNA_01140	0.49	-1.1
1,244,089	-		CCNA_01140	0.50	+1.0
1,244,132	+		CCNA_01140	0.52	+1.5
1,244,140	-		CCNA_01140	0.53	-0.1
1,244,163	+		CCNA_01140	0.54	+1.9
1,244,171	-		CCNA_01140	0.55	+2.2
1,244,171	-		CCNA_01140	0.55	+0.6
1,244,226	-		CCNA_01140	0.58	-0.9
1,244,229	-		CCNA_01140	0.58	-1.1
1,244,241	-		CCNA_01140	0.59	-0.4