Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01122

Experiment: PYE with nitrate 100 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with nitrate 100 mM
1,225,151	+		CCNA_01121	0.43	-1.1
1,225,151	+		CCNA_01121	0.43	-1.9
1,225,151	+		CCNA_01121	0.43	-0.6
1,225,159	-		CCNA_01121	0.44	+1.5
1,225,245	+		CCNA_01121	0.50	-0.1
1,225,263	+		CCNA_01121	0.51	+0.0
1,225,264	+		CCNA_01121	0.51	-0.4
1,225,291	+		CCNA_01121	0.53	-1.3
1,225,309	-		CCNA_01121	0.54	-1.3
1,225,326	-		CCNA_01121	0.55	+0.9
1,225,336	+		CCNA_01121	0.56	-1.0
1,225,344	-		CCNA_01121	0.56	-1.6
1,225,357	+		CCNA_01121	0.57	-1.4
1,225,431	-		CCNA_01121	0.62	-3.1
1,225,436	-		CCNA_01121	0.62	-0.8
1,225,443	-		CCNA_01121	0.63	+1.5
1,225,446	+		CCNA_01121	0.63	+0.5
1,225,454	-		CCNA_01121	0.63	+0.2
1,225,454	-		CCNA_01121	0.63	-0.8
1,225,454	-		CCNA_01121	0.63	+0.4
1,225,454	-		CCNA_01121	0.63	-1.0
1,225,454	-		CCNA_01121	0.63	+2.2
1,225,454	-		CCNA_01121	0.63	-1.1
1,225,499	+		CCNA_01121	0.66	+0.4
1,225,499	+		CCNA_01121	0.66	-2.1
1,225,499	+		CCNA_01121	0.66	+0.5
1,225,546	+		CCNA_01121	0.70	+1.4
1,225,574	+		CCNA_01121	0.71	+0.8
1,225,590	+		CCNA_01121	0.72	-2.1
1,225,599	-		CCNA_01121	0.73	-0.1
1,225,612	+		CCNA_01121	0.74	-1.6
1,225,620	-		CCNA_01121	0.74	-1.6
1,225,639	-		CCNA_01121	0.76	-0.4
1,225,669	+		CCNA_01121	0.78	-0.3
1,225,669	+		CCNA_01121	0.78	-0.9
1,225,669	+		CCNA_01121	0.78	-1.2
1,225,677	-		CCNA_01121	0.78	-1.0
1,225,677	-		CCNA_01121	0.78	+0.6
1,225,712	-		CCNA_01121	0.80	+3.2
1,225,713	+		CCNA_01121	0.81	-1.4
1,225,735	-		CCNA_01121	0.82	-0.1
1,225,738	+		CCNA_01121	0.82	+0.6
1,225,738	+		CCNA_01121	0.82	-2.3
1,225,738	+		CCNA_01121	0.82	+0.9
1,225,738	+		CCNA_01121	0.82	-1.0
1,225,738	+		CCNA_01121	0.82	+0.2
1,225,738	+		CCNA_01121	0.82	+0.5
1,225,738	+		CCNA_01121	0.82	-1.5
1,225,738	+		CCNA_01121	0.82	-1.1
1,225,738	+				+2.2
1,225,738	+		CCNA_01121	0.82	+1.6
1,225,738	+		CCNA_01121	0.82	+0.5
1,225,746	-		CCNA_01121	0.83	-0.6
1,225,746	-		CCNA_01121	0.83	-1.8
1,225,746	-		CCNA_01121	0.83	-1.6
1,225,746	-		CCNA_01121	0.83	+0.2
1,225,746	-		CCNA_01121	0.83	+0.2
1,225,746	-		CCNA_01121	0.83	+1.2
1,225,746	-		CCNA_01121	0.83	+3.2
1,225,746	-		CCNA_01121	0.83	+0.2
1,225,748	-		CCNA_01121	0.83	+1.2
1,225,802	+		CCNA_01121	0.86	+0.6
1,225,802	+		CCNA_01121	0.86	+1.5
1,225,809	+		CCNA_01121	0.87	-1.4
1,225,814	+				+2.2
1,225,851	+		CCNA_01121	0.90	+0.6
1,225,851	+		CCNA_01121	0.90	+0.4
1,225,965	+				+0.2
1,225,973	+				+0.9
1,225,975	+				-1.0
1,225,975	+				-1.1
1,225,975	+				+0.0
1,226,060	+				-1.0
1,226,083	-				-1.5
1,226,084	+				+0.5
1,226,115	+				+1.0
1,226,122	+				-1.0
1,226,122	+				+1.6
1,226,130	-				+0.2
1,226,146	+				+0.4
1,226,154	-				-0.3
1,226,154	-				+3.2
1,226,155	-				+0.2
1,226,195	+				-0.3
1,226,210	+				+1.2
1,226,210	+				+0.5
1,226,218	-				-0.1
1,226,218	-				+0.2
1,226,223	-				-1.1
1,226,235	+				+0.4
1,226,235	+				+0.1
1,226,243	-				+0.2
1,226,249	-				+1.6
1,226,270	+				-0.1
1,226,288	+				+0.3
1,226,289	-				+0.6
1,226,289	-				-0.7
1,226,297	+		CCNA_01122	0.10	+0.8
1,226,357	+		CCNA_01122	0.14	+0.3
1,226,390	+		CCNA_01122	0.16	+0.6
1,226,390	-		CCNA_01122	0.16	+1.2
1,226,453	+		CCNA_01122	0.20	+0.5
1,226,461	-		CCNA_01122	0.21	-1.1
1,226,461	-		CCNA_01122	0.21	-0.4
1,226,489	+		CCNA_01122	0.23	+1.2
1,226,513	-		CCNA_01122	0.24	-1.0
1,226,533	+		CCNA_01122	0.26	-2.1
1,226,541	-		CCNA_01122	0.26	-1.6
1,226,546	+		CCNA_01122	0.26	+1.9
1,226,553	+		CCNA_01122	0.27	+1.5
1,226,553	+		CCNA_01122	0.27	-1.1
1,226,592	+		CCNA_01122	0.29	-0.8
1,226,597	+		CCNA_01122	0.30	-0.6
1,226,597	+		CCNA_01122	0.30	+0.0
1,226,605	-		CCNA_01122	0.30	+2.2
1,226,636	+		CCNA_01122	0.32	+1.6
1,226,641	+		CCNA_01122	0.33	+0.4
1,226,646	+		CCNA_01122	0.33	-0.4
1,226,654	-		CCNA_01122	0.33	-0.1
1,226,749	+		CCNA_01122	0.40	+1.3
1,226,749	+		CCNA_01122	0.40	+1.7
1,226,772	-		CCNA_01122	0.41	-0.8
1,226,836	-		CCNA_01122	0.45	+0.9
1,226,836	-		CCNA_01122	0.45	-0.8
1,226,864	+		CCNA_01122	0.47	-0.8
1,226,900	+		CCNA_01122	0.49	+0.6
1,226,900	+		CCNA_01122	0.49	-0.4
1,226,910	+		CCNA_01122	0.50	+3.6
1,226,910	+		CCNA_01122	0.50	+2.0
1,226,910	+		CCNA_01122	0.50	+1.8
1,226,974	-		CCNA_01122	0.54	-1.1
1,227,006	-		CCNA_01122	0.56	+2.2
1,227,027	+		CCNA_01122	0.58	+0.5
1,227,057	-		CCNA_01122	0.60	-1.3
1,227,118	+		CCNA_01122	0.64	+0.2
1,227,121	-		CCNA_01122	0.64	+2.2
1,227,126	-		CCNA_01122	0.64	-0.4
1,227,126	-		CCNA_01122	0.64	+0.6
1,227,140	+		CCNA_01122	0.65	+0.6
1,227,187	+		CCNA_01122	0.68	-0.0
1,227,188	+		CCNA_01122	0.68	-0.1
1,227,196	-		CCNA_01122	0.69	-1.9
1,227,197	+		CCNA_01122	0.69	+0.2
1,227,197	+		CCNA_01122	0.69	-0.5
1,227,216	+		CCNA_01122	0.70	-0.5
1,227,240	-		CCNA_01122	0.72	+0.6
1,227,240	-		CCNA_01122	0.72	+0.9
1,227,240	-		CCNA_01122	0.72	-0.1
1,227,259	+		CCNA_01122	0.73	+0.1
1,227,259	+		CCNA_01122	0.73	+1.1
1,227,259	+		CCNA_01122	0.73	+0.5
1,227,269	+		CCNA_01122	0.73	+1.2
1,227,269	+		CCNA_01122	0.73	+2.8
1,227,274	+		CCNA_01122	0.74	+0.8
1,227,274	+		CCNA_01122	0.74	-0.4
1,227,277	-		CCNA_01122	0.74	+1.6
1,227,277	-		CCNA_01122	0.74	+2.2
1,227,277	-		CCNA_01122	0.74	-0.8
1,227,279	+		CCNA_01122	0.74	+0.8
1,227,282	-		CCNA_01122	0.74	+0.2
1,227,287	-		CCNA_01122	0.75	+0.2
1,227,314	-		CCNA_01122	0.76	-0.1
1,227,314	-		CCNA_01122	0.76	+0.6
1,227,363	-		CCNA_01122	0.80	-0.4
1,227,371	+		CCNA_01122	0.80	+0.8
1,227,383	+		CCNA_01122	0.81	-0.1
1,227,383	+		CCNA_01122	0.81	+0.4
1,227,386	-		CCNA_01122	0.81	-1.1
1,227,391	-		CCNA_01122	0.81	-1.4
1,227,391	-		CCNA_01122	0.81	+1.2
1,227,391	-		CCNA_01122	0.81	-1.5
1,227,402	+		CCNA_01122	0.82	-1.9
1,227,439	+		CCNA_01122	0.85	+1.4
1,227,439	+		CCNA_01122	0.85	-0.7
1,227,439	+		CCNA_01122	0.85	+1.2
1,227,447	-		CCNA_01122	0.85	-1.0
1,227,451	+		CCNA_01122	0.85	+1.9
1,227,459	-		CCNA_01122	0.86	+1.6
1,227,459	-		CCNA_01122	0.86	+2.2
1,227,469	-		CCNA_01122	0.86	-1.0
1,227,469	-		CCNA_01122	0.86	+0.6
1,227,491	+		CCNA_01122	0.88	-0.2
1,227,498	+		CCNA_01122	0.88	+0.3
1,227,498	+		CCNA_01122	0.88	-0.3
1,227,498	+		CCNA_01122	0.88	+0.5
1,227,498	+		CCNA_01122	0.88	+1.1
1,227,498	+		CCNA_01122	0.88	-0.2
1,227,506	-		CCNA_01122	0.89	-0.1
1,227,506	-		CCNA_01122	0.89	+0.2
1,227,506	-		CCNA_01122	0.89	-1.0
1,227,506	-		CCNA_01122	0.89	+2.2
1,227,506	-		CCNA_01122	0.89	-1.4
1,227,548	+				+4.3
1,227,548	+				-1.5
1,227,558	-				+0.2
1,227,570	+				-1.0
1,227,570	+				-0.4
1,227,578	-				-0.6
1,227,581	+				-1.4
1,227,581	+				-1.1
1,227,588	-				-0.4
1,227,589	-				+0.6
1,227,599	-				-0.1
1,227,608	-				+0.6
1,227,622	+				-0.5
1,227,650	+				-2.0
1,227,727	+				+0.4
1,227,727	+				+0.8
1,227,746	+				-1.6
1,227,895	+		CCNA_01123	0.13	+0.8
1,227,898	-		CCNA_01123	0.13	-1.1
1,227,913	-		CCNA_01123	0.14	-0.8
1,227,939	+		CCNA_01123	0.16	-0.2
1,227,996	-		CCNA_01123	0.19	-2.0
1,228,025	-		CCNA_01123	0.21	-0.6
1,228,051	+		CCNA_01123	0.23	+0.5
1,228,051	+		CCNA_01123	0.23	+0.5
1,228,051	+		CCNA_01123	0.23	-0.4
1,228,051	+		CCNA_01123	0.23	-0.1
1,228,059	-		CCNA_01123	0.23	+0.7
1,228,061	+		CCNA_01123	0.23	+0.7
1,228,106	-		CCNA_01123	0.26	-0.4
1,228,134	-		CCNA_01123	0.28	-0.6
1,228,185	+		CCNA_01123	0.31	+0.6
1,228,185	+		CCNA_01123	0.31	+1.5
1,228,185	+		CCNA_01123	0.31	+0.4
1,228,185	+		CCNA_01123	0.31	+1.4
1,228,185	+		CCNA_01123	0.31	-0.2
1,228,185	+		CCNA_01123	0.31	+0.7
1,228,190	+		CCNA_01123	0.31	-0.4
1,228,193	-		CCNA_01123	0.32	+1.2
1,228,198	-		CCNA_01123	0.32	-2.0
1,228,217	+		CCNA_01123	0.33	+0.2
1,228,300	+		CCNA_01123	0.38	+0.2
1,228,301	+		CCNA_01123	0.38	+0.5
1,228,303	-		CCNA_01123	0.38	+1.2
1,228,308	+		CCNA_01123	0.39	+1.1
1,228,309	-		CCNA_01123	0.39	-1.5
1,228,321	+		CCNA_01123	0.40	+1.1
1,228,348	-		CCNA_01123	0.41	-0.6
1,228,396	-		CCNA_01123	0.44	-0.6
1,228,416	+		CCNA_01123	0.45	-1.1
1,228,434	+		CCNA_01123	0.47	-0.3
1,228,464	+		CCNA_01123	0.48	+0.8
1,228,464	+		CCNA_01123	0.48	+1.2
1,228,472	-		CCNA_01123	0.49	-0.5
1,228,472	-		CCNA_01123	0.49	-0.4
1,228,485	+		CCNA_01123	0.50	+0.6
1,228,523	+		CCNA_01123	0.52	+1.2
1,228,586	+		CCNA_01123	0.56	-1.1
1,228,616	-		CCNA_01123	0.58	-0.6
1,228,640	+		CCNA_01123	0.59	+1.1
1,228,651	+		CCNA_01123	0.60	-0.2
1,228,664	-		CCNA_01123	0.61	-1.8
1,228,669	-		CCNA_01123	0.61	+1.6