Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00869

Experiment: PYE with nitrate 100 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with nitrate 100 mM
946,457	+				+1.2
946,464	+				+1.1
946,494	-				+0.7
946,509	+				+0.3
946,509	+				-1.2
946,509	+				+0.2
946,509	+				+0.2
946,509	+				+0.7
946,509	+				-0.2
946,509	+				+0.8
946,509	+				-1.1
946,517	-				+0.7
946,553	-				+1.7
946,589	+				-0.6
946,609	-				+1.1
946,655	+				-0.1
946,656	+				+0.7
946,656	+				-0.4
946,658	-				-0.6
946,664	-				-1.2
946,685	+				+2.0
946,711	-				-0.6
946,727	-				-1.3
946,741	+				-0.6
946,767	-				-1.7
946,809	+		CCNA_03889	0.12	-0.3
946,815	+		CCNA_03889	0.13	+1.1
946,815	+		CCNA_03889	0.13	+1.7
946,815	+		CCNA_03889	0.13	+0.0
946,815	+		CCNA_03889	0.13	-1.3
946,815	+		CCNA_03889	0.13	+0.9
946,823	-		CCNA_03889	0.15	-0.6
946,827	+		CCNA_03889	0.15	-1.5
946,827	+		CCNA_03889	0.15	+0.8
946,876	+		CCNA_03889	0.25	+0.3
946,917	+		CCNA_03889	0.33	-0.1
946,917	+		CCNA_03889	0.33	+0.1
946,917	+		CCNA_03889	0.33	-1.6
946,925	-		CCNA_03889	0.34	-0.1
946,925	-		CCNA_03889	0.34	-0.7
946,925	-		CCNA_03889	0.34	+1.9
946,944	+		CCNA_03889	0.38	+0.3
946,962	+		CCNA_03889	0.41	+1.3
946,963	+		CCNA_03889	0.41	-0.4
946,963	+		CCNA_03889	0.41	+1.3
946,963	+		CCNA_03889	0.41	+1.3
946,970	-		CCNA_03889	0.43	+1.8
946,978	+		CCNA_03889	0.44	+1.4
946,981	+		CCNA_03889	0.45	-0.4
946,986	-		CCNA_03889	0.46	-0.6
946,996	+		CCNA_03889	0.48	-0.4
946,998	-		CCNA_03889	0.48	+0.7
947,004	-		CCNA_03889	0.49	-0.9
947,010	+		CCNA_03889	0.50	-0.1
947,031	+		CCNA_03889	0.54	-0.6
947,062	-		CCNA_03889	0.60	+0.3
947,088	+		CCNA_03889	0.65	+0.0
947,107	+		CCNA_03889	0.69	-0.1
947,109	-		CCNA_03889	0.69	-0.1
947,115	-		CCNA_03889	0.70	-0.9
947,203	+		CCNA_03889	0.87	+0.7
947,211	-		CCNA_03889	0.89	-0.1
947,231	+				+1.0
947,237	+				+0.4
947,247	+				+0.3
947,262	+				-0.7
947,262	+				+1.4
947,262	+				-0.7
947,262	+				+0.1
947,262	+				-1.4
947,262	+				+0.2
947,269	+				-0.1
947,269	+				+0.7
947,271	+				+1.0
947,274	+				+1.3
947,282	-				+0.7
947,306	+				-0.9
947,356	+				+1.3
947,358	-				+0.7
947,364	-				+1.2
947,391	+				-0.6
947,418	+				-0.1
947,418	+				+3.3
947,442	+				-1.2
947,452	+				-0.7
947,485	-				-0.7
947,507	+				+0.1
947,539	-				+0.3
947,539	-				+0.3
947,550	-				+2.0
947,559	-				+1.3
947,662	-				-1.2
947,675	-				+0.7
947,691	+				-0.7
947,716	+				+0.3
947,739	+		CCNA_00869	0.11	+2.3
947,739	+		CCNA_00869	0.11	+1.3
947,752	-		CCNA_00869	0.11	+1.7
947,770	-		CCNA_00869	0.12	+1.7
947,784	+		CCNA_00869	0.12	+0.3
947,800	-		CCNA_00869	0.13	+1.0
947,800	-		CCNA_00869	0.13	+0.7
947,810	+				+1.3
947,836	-		CCNA_00869	0.14	+1.1
947,846	-		CCNA_00869	0.14	+0.2
947,895	+		CCNA_00869	0.16	+1.9
948,043	-		CCNA_00869	0.21	-1.8
948,059	-		CCNA_00869	0.21	+0.7
948,062	+		CCNA_00869	0.22	-0.3
948,143	+		CCNA_00869	0.24	+2.3
948,143	+		CCNA_00869	0.24	-1.2
948,342	-		CCNA_00869	0.31	+1.0
948,364	-		CCNA_00869	0.32	-0.0
948,408	+		CCNA_00869	0.33	+0.4
948,429	-		CCNA_00869	0.34	+0.7
948,442	-		CCNA_00869	0.34	+0.0
948,467	-		CCNA_00869	0.35	+0.2
948,473	-		CCNA_00869	0.35	+1.4
948,504	-		CCNA_00869	0.36	+0.7
948,540	+		CCNA_00869	0.38	-0.3
948,548	-		CCNA_00869	0.38	+1.7
948,555	+		CCNA_00869	0.38	-0.8
948,563	-		CCNA_00869	0.38	+1.9
948,568	-		CCNA_00869	0.39	+0.8
948,569	-		CCNA_00869	0.39	+1.3
948,601	+		CCNA_00869	0.40	+0.3
948,635	-		CCNA_00869	0.41	+0.6
948,676	+		CCNA_00869	0.42	-0.6
948,679	+		CCNA_00869	0.42	-0.1
948,686	-		CCNA_00869	0.43	+0.8
948,686	-		CCNA_00869	0.43	+1.0
948,728	-		CCNA_00869	0.44	+0.9
948,741	+		CCNA_00869	0.44	+0.3
948,741	+		CCNA_00869	0.44	+1.3
948,741	+		CCNA_00869	0.44	+0.7
948,749	-		CCNA_00869	0.45	+2.1
948,767	-		CCNA_00869	0.45	+1.4
948,832	-		CCNA_00869	0.48	+0.9
948,892	+		CCNA_00869	0.50	-0.6
948,900	-		CCNA_00869	0.50	+1.4
948,968	-		CCNA_00869	0.52	+0.8
949,033	-		CCNA_00869	0.54	+0.4
949,033	-		CCNA_00869	0.54	+1.7
949,033	-		CCNA_00869	0.54	-0.3
949,051	+		CCNA_00869	0.55	+1.9
949,060	-		CCNA_00869	0.55	+1.4
949,071	+		CCNA_00869	0.56	+0.3
949,079	-		CCNA_00869	0.56	+0.7
949,099	+		CCNA_00869	0.57	+2.3
949,207	-		CCNA_00869	0.60	+0.1
949,209	+		CCNA_00869	0.60	+0.8
949,211	+		CCNA_00869	0.60	-1.6
949,211	+		CCNA_00869	0.60	+0.7
949,211	+		CCNA_00869	0.60	-0.1
949,219	-		CCNA_00869	0.61	-0.1
949,219	-		CCNA_00869	0.61	+0.9
949,219	-		CCNA_00869	0.61	+1.8
949,219	-		CCNA_00869	0.61	+1.3
949,219	-		CCNA_00869	0.61	-1.1
949,219	-		CCNA_00869	0.61	+1.3
949,252	-		CCNA_00869	0.62	-0.1
949,283	-		CCNA_00869	0.63	+0.8
949,329	+		CCNA_00869	0.64	+0.1
949,337	-		CCNA_00869	0.65	+1.5
949,361	+		CCNA_00869	0.65	+0.3
949,392	+		CCNA_00869	0.66	+0.7
949,392	+		CCNA_00869	0.66	+1.0
949,469	-		CCNA_00869	0.69	+0.3
949,469	-		CCNA_00869	0.69	+0.4
949,497	+		CCNA_00869	0.70	+0.1
949,546	-		CCNA_00869	0.72	+1.2
949,548	+				+2.3
949,548	+		CCNA_00869	0.72	+0.3
949,548	+		CCNA_00869	0.72	+2.3
949,582	+		CCNA_00869	0.73	-0.8
949,590	-		CCNA_00869	0.73	+2.0
949,621	+		CCNA_00869	0.74	+1.4
949,643	-		CCNA_00869	0.75	+0.8
949,659	+		CCNA_00869	0.75	-0.1
949,733	+		CCNA_00869	0.78	+0.7
949,866	-		CCNA_00869	0.82	+1.4
949,894	-		CCNA_00869	0.83	+0.7
949,917	-		CCNA_00869	0.84	+0.3
949,930	-		CCNA_00869	0.85	+2.2
949,931	-		CCNA_00869	0.85	+1.3
949,948	+		CCNA_00869	0.85	+0.7
949,957	-		CCNA_00869	0.86	+1.1
949,995	-		CCNA_00869	0.87	+2.9
950,028	-		CCNA_00869	0.88	+0.6
950,033	+		CCNA_00869	0.88	+0.7
950,062	-		CCNA_00869	0.89	+0.7
950,074	+		CCNA_00869	0.90	+3.3
950,104	+				-1.0
950,114	-				-0.2
950,114	-				+1.6
950,123	+				-0.7
950,131	-				-0.3
950,131	-				+0.0
950,154	+				-0.3
950,154	+				-0.3
950,196	+				+1.7
950,224	-				+2.3
950,224	-				+2.1
950,225	-				+0.7
950,241	-				+1.9
950,310	-				+1.3
950,378	+				+1.7
950,378	+				+0.4
950,379	+				+1.8
950,381	+				-0.1
950,386	-				+2.6
950,406	-				+0.4
950,408	+				-0.6
950,416	-				+0.5
950,450	-				+0.5
950,452	+				+1.3
950,455	-				+1.8
950,480	+				-0.3
950,484	+				-2.6
950,495	+		CCNA_00870	0.11	+0.9
950,495	+		CCNA_00870	0.11	+0.1
950,501	+		CCNA_00870	0.12	+0.2
950,518	+		CCNA_00870	0.16	-1.2
950,519	+		CCNA_00870	0.16	+0.7
950,519	+		CCNA_00870	0.16	-0.7
950,527	-		CCNA_00870	0.18	+2.1
950,527	-		CCNA_00870	0.18	+2.3
950,527	-		CCNA_00870	0.18	-0.4
950,593	-		CCNA_00870	0.33	+0.4
950,670	-		CCNA_00870	0.50	+1.9
950,734	+		CCNA_00870	0.65	-0.9
950,741	+		CCNA_00870	0.67	-1.2
950,741	+		CCNA_00870	0.67	+1.3
950,751	+		CCNA_00870	0.69	-0.6
950,751	+		CCNA_00870	0.69	+1.3
950,751	+		CCNA_00870	0.69	-1.1
950,759	-		CCNA_00870	0.71	+1.8
950,777	-		CCNA_00870	0.75	+0.5
950,829	+		CCNA_00870	0.87	-2.4
950,837	-		CCNA_00870	0.89	+1.8
950,859	+				-0.3
950,884	-				+1.1
950,887	+				+2.7
950,895	-				+0.9
950,895	-				+0.4
950,895	-				+3.0
950,903	-				+1.2
950,905	+				+0.4
950,923	-				+1.7
950,936	-				+1.7
950,941	-				+1.0
950,967	-				+0.0
951,014	+		CCNA_00871	0.13	+1.3
951,038	+		CCNA_00871	0.15	+1.1
951,047	+		CCNA_00871	0.17	-1.4
951,062	+				+2.3
951,062	+		CCNA_00871	0.18	-1.3
951,102	+		CCNA_00871	0.23	-0.7
951,112	+		CCNA_00871	0.24	+0.3
951,120	-		CCNA_00871	0.25	-0.3
951,120	-		CCNA_00871	0.25	+1.5
951,182	+		CCNA_00871	0.32	-0.6
951,182	+		CCNA_00871	0.32	-0.1
951,182	+		CCNA_00871	0.32	-0.1
951,190	-		CCNA_00871	0.33	+0.9
951,218	+		CCNA_00871	0.37	-0.3
951,218	+		CCNA_00871	0.37	-0.3
951,224	+		CCNA_00871	0.37	-0.1
951,226	-		CCNA_00871	0.38	+0.7
951,226	-		CCNA_00871	0.38	+1.3
951,259	-		CCNA_00871	0.41	+3.1
951,269	+		CCNA_00871	0.43	+0.9
951,280	+		CCNA_00871	0.44	-0.6
951,288	-		CCNA_00871	0.45	+0.4
951,294	+		CCNA_00871	0.46	-0.3
951,330	+		CCNA_00871	0.50	+0.3
951,374	+		CCNA_00871	0.55	+1.3
951,379	+		CCNA_00871	0.56	-1.1
951,379	+		CCNA_00871	0.56	-0.6