Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00835

Experiment: PYE with nitrate 100 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00834 and CCNA_00835 are separated by 550 nucleotidesCCNA_00835 and CCNA_00836 are separated by 335 nucleotides CCNA_00834: CCNA_00834 - flagellin FljM, at 899,662 to 900,483 _00834 CCNA_00835: CCNA_00835 - flagellin FljN, at 901,034 to 901,855 _00835 CCNA_00836: CCNA_00836 - flagellin FljO, at 902,191 to 903,012 _00836 Position (kb) 901 902Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 900.059 kb on - strand, within CCNA_00834at 900.065 kb on - strand, within CCNA_00834at 900.065 kb on - strand, within CCNA_00834at 900.089 kb on + strand, within CCNA_00834at 900.089 kb on + strand, within CCNA_00834at 900.127 kb on + strand, within CCNA_00834at 900.147 kb on + strand, within CCNA_00834at 900.148 kb on + strand, within CCNA_00834at 900.150 kb on - strand, within CCNA_00834at 900.155 kb on - strand, within CCNA_00834at 900.156 kb on - strand, within CCNA_00834at 900.156 kb on - strand, within CCNA_00834at 900.156 kb on - strand, within CCNA_00834at 900.236 kb on - strand, within CCNA_00834at 900.322 kb on + strand, within CCNA_00834at 900.322 kb on + strand, within CCNA_00834at 900.322 kb on + strand, within CCNA_00834at 900.322 kb on + strand, within CCNA_00834at 900.322 kb on + strand, within CCNA_00834at 900.322 kb on + strand, within CCNA_00834at 900.322 kb on + strand, within CCNA_00834at 900.322 kb on + strand, within CCNA_00834at 900.322 kb on + strand, within CCNA_00834at 900.332 kb on + strand, within CCNA_00834at 900.332 kb on + strand, within CCNA_00834at 900.568 kb on - strandat 900.587 kb on - strandat 900.599 kb on - strandat 900.605 kb on - strandat 900.615 kb on + strandat 900.623 kb on - strandat 900.625 kb on - strandat 900.648 kb on - strandat 900.664 kb on + strandat 900.682 kb on + strandat 900.682 kb on + strandat 900.682 kb on + strandat 900.682 kb on + strandat 900.687 kb on + strandat 900.687 kb on + strandat 900.688 kb on + strandat 900.690 kb on - strandat 900.690 kb on - strandat 900.690 kb on - strandat 900.695 kb on - strandat 900.695 kb on - strandat 900.695 kb on - strandat 900.704 kb on + strandat 900.733 kb on + strandat 900.751 kb on - strandat 900.762 kb on + strandat 900.770 kb on - strandat 900.785 kb on - strandat 900.790 kb on + strandat 900.790 kb on + strandat 900.790 kb on + strandat 900.790 kb on + strandat 900.790 kb on + strandat 900.790 kb on + strandat 900.790 kb on + strandat 900.790 kb on + strandat 900.790 kb on + strandat 900.798 kb on - strandat 900.798 kb on - strandat 900.798 kb on - strandat 900.798 kb on - strandat 900.798 kb on - strandat 900.798 kb on - strandat 900.811 kb on + strandat 900.819 kb on - strandat 900.851 kb on - strandat 900.990 kb on - strandat 901.012 kb on + strandat 901.012 kb on + strandat 901.013 kb on + strandat 901.020 kb on - strandat 901.020 kb on - strandat 901.037 kb on + strandat 901.045 kb on - strandat 901.045 kb on - strandat 901.045 kb on - strandat 901.109 kb on - strandat 901.114 kb on - strandat 901.124 kb on - strand, within CCNA_00835at 901.124 kb on - strand, within CCNA_00835at 901.162 kb on + strand, within CCNA_00835at 901.162 kb on + strand, within CCNA_00835at 901.162 kb on + strand, within CCNA_00835at 901.360 kb on + strand, within CCNA_00835at 901.360 kb on + strand, within CCNA_00835at 901.405 kb on + strand, within CCNA_00835at 901.410 kb on - strand, within CCNA_00835at 901.424 kb on + strand, within CCNA_00835at 901.461 kb on + strand, within CCNA_00835at 901.494 kb on + strand, within CCNA_00835at 901.494 kb on + strand, within CCNA_00835at 901.494 kb on + strand, within CCNA_00835at 901.494 kb on + strand, within CCNA_00835at 901.494 kb on + strand, within CCNA_00835at 901.494 kb on + strand, within CCNA_00835at 901.494 kb on + strand, within CCNA_00835at 901.494 kb on + strand, within CCNA_00835at 901.502 kb on - strand, within CCNA_00835at 901.502 kb on - strand, within CCNA_00835at 901.520 kb on + strand, within CCNA_00835at 901.521 kb on + strand, within CCNA_00835at 901.523 kb on - strand, within CCNA_00835at 901.529 kb on - strand, within CCNA_00835at 901.529 kb on - strand, within CCNA_00835at 901.529 kb on - strand, within CCNA_00835at 901.533 kb on - strand, within CCNA_00835at 901.534 kb on - strand, within CCNA_00835at 901.534 kb on - strand, within CCNA_00835at 901.536 kb on + strand, within CCNA_00835at 901.536 kb on + strand, within CCNA_00835at 901.536 kb on + strand, within CCNA_00835at 901.536 kb on + strand, within CCNA_00835at 901.536 kb on + strand, within CCNA_00835at 901.536 kb on + strand, within CCNA_00835at 901.536 kb on + strand, within CCNA_00835at 901.544 kb on - strand, within CCNA_00835at 901.544 kb on - strand, within CCNA_00835at 901.544 kb on - strand, within CCNA_00835at 901.544 kb on - strand, within CCNA_00835at 901.544 kb on - strand, within CCNA_00835at 901.559 kb on + strand, within CCNA_00835at 901.559 kb on + strand, within CCNA_00835at 901.567 kb on - strand, within CCNA_00835at 901.569 kb on - strand, within CCNA_00835at 901.569 kb on - strand, within CCNA_00835at 901.618 kb on - strand, within CCNA_00835at 901.618 kb on - strand, within CCNA_00835at 901.693 kb on + strand, within CCNA_00835at 901.694 kb on + strand, within CCNA_00835at 901.694 kb on + strand, within CCNA_00835at 901.694 kb on + strand, within CCNA_00835at 901.694 kb on + strand, within CCNA_00835at 901.768 kb on - strand, within CCNA_00835at 901.768 kb on - strand, within CCNA_00835at 901.771 kb on + strand, within CCNA_00835at 901.794 kb on + strandat 901.821 kb on + strandat 901.869 kb on - strandat 901.878 kb on + strandat 901.927 kb on - strandat 902.027 kb on + strandat 902.049 kb on + strandat 902.130 kb on + strandat 902.177 kb on - strandat 902.177 kb on - strandat 902.194 kb on + strandat 902.202 kb on - strandat 902.258 kb on + strandat 902.263 kb on + strandat 902.266 kb on - strandat 902.314 kb on + strand, within CCNA_00836at 902.322 kb on + strand, within CCNA_00836at 902.322 kb on - strand, within CCNA_00836at 902.322 kb on - strand, within CCNA_00836at 902.327 kb on - strand, within CCNA_00836at 902.331 kb on + strand, within CCNA_00836at 902.340 kb on - strand, within CCNA_00836at 902.440 kb on - strand, within CCNA_00836at 902.488 kb on + strand, within CCNA_00836at 902.488 kb on + strand, within CCNA_00836at 902.500 kb on + strand, within CCNA_00836at 902.510 kb on - strand, within CCNA_00836at 902.510 kb on - strand, within CCNA_00836at 902.517 kb on + strand, within CCNA_00836at 902.557 kb on + strand, within CCNA_00836at 902.559 kb on + strand, within CCNA_00836at 902.570 kb on - strand, within CCNA_00836at 902.570 kb on - strand, within CCNA_00836at 902.623 kb on + strand, within CCNA_00836at 902.625 kb on + strand, within CCNA_00836at 902.632 kb on + strand, within CCNA_00836at 902.664 kb on - strand, within CCNA_00836at 902.692 kb on + strand, within CCNA_00836at 902.698 kb on + strand, within CCNA_00836at 902.700 kb on - strand, within CCNA_00836at 902.706 kb on - strand, within CCNA_00836at 902.719 kb on - strand, within CCNA_00836at 902.725 kb on - strand, within CCNA_00836at 902.851 kb on + strand, within CCNA_00836at 902.851 kb on + strand, within CCNA_00836

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with nitrate 100 mM
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900,059 - CCNA_00834 0.48 -1.6
900,065 - CCNA_00834 0.49 -0.7
900,065 - CCNA_00834 0.49 +0.3
900,089 + CCNA_00834 0.52 +1.4
900,089 + CCNA_00834 0.52 +2.1
900,127 + CCNA_00834 0.57 +2.3
900,147 + CCNA_00834 0.59 +2.0
900,148 + CCNA_00834 0.59 +2.6
900,150 - CCNA_00834 0.59 -1.8
900,155 - CCNA_00834 0.60 -0.0
900,156 - CCNA_00834 0.60 +0.4
900,156 - CCNA_00834 0.60 -1.6
900,156 - CCNA_00834 0.60 +0.6
900,236 - CCNA_00834 0.70 +1.5
900,322 + CCNA_00834 0.80 +2.7
900,322 + CCNA_00834 0.80 +2.9
900,322 + CCNA_00834 0.80 +2.6
900,322 + CCNA_00834 0.80 +2.9
900,322 + CCNA_00834 0.80 +2.7
900,322 + CCNA_00834 0.80 +2.4
900,322 + CCNA_00834 0.80 +2.4
900,322 + CCNA_00834 0.80 +2.7
900,322 + CCNA_00834 0.80 +1.8
900,332 + CCNA_00834 0.82 +2.4
900,332 + CCNA_00834 0.82 +2.5
900,568 - -0.5
900,587 - +1.3
900,599 - +1.0
900,605 - -0.7
900,615 + -0.5
900,623 - +1.7
900,625 - -0.2
900,648 - -1.4
900,664 + +0.7
900,682 + -2.2
900,682 + +0.6
900,682 + -0.8
900,682 + +0.3
900,687 + +0.3
900,687 + +0.1
900,688 + -0.7
900,690 - +0.8
900,690 - -0.5
900,690 - -0.1
900,695 - -0.3
900,695 - -1.9
900,695 - +1.7
900,704 + +2.3
900,733 + +0.9
900,751 - +0.3
900,762 + -1.0
900,770 - +0.7
900,785 - +0.4
900,790 + -1.2
900,790 + -0.7
900,790 + +0.2
900,790 + -1.3
900,790 + -1.4
900,790 + +0.9
900,790 + -2.1
900,790 + -0.1
900,790 + +0.7
900,798 - -0.5
900,798 - -0.4
900,798 - -0.3
900,798 - +0.4
900,798 - -0.3
900,798 - +0.8
900,811 + +1.3
900,819 - -0.7
900,851 - -0.3
900,990 - +0.7
901,012 + -0.7
901,012 + -0.9
901,013 + +1.7
901,020 - -2.2
901,020 - +2.3
901,037 + +2.7
901,045 - -0.3
901,045 - -0.3
901,045 - -0.0
901,109 - -0.0
901,114 - -0.5
901,124 - CCNA_00835 0.11 +1.0
901,124 - CCNA_00835 0.11 -1.8
901,162 + CCNA_00835 0.16 -0.2
901,162 + CCNA_00835 0.16 -1.0
901,162 + CCNA_00835 0.16 +0.8
901,360 + CCNA_00835 0.40 +1.0
901,360 + CCNA_00835 0.40 +0.2
901,405 + CCNA_00835 0.45 +0.3
901,410 - CCNA_00835 0.46 -1.4
901,424 + CCNA_00835 0.47 +1.6
901,461 + CCNA_00835 0.52 +0.8
901,494 + CCNA_00835 0.56 +1.1
901,494 + CCNA_00835 0.56 +1.1
901,494 + CCNA_00835 0.56 +1.7
901,494 + CCNA_00835 0.56 +1.3
901,494 + CCNA_00835 0.56 +1.5
901,494 + CCNA_00835 0.56 +0.7
901,494 + CCNA_00835 0.56 +0.6
901,494 + CCNA_00835 0.56 -1.6
901,502 - CCNA_00835 0.57 +2.9
901,502 - CCNA_00835 0.57 -0.9
901,520 + CCNA_00835 0.59 +0.9
901,521 + CCNA_00835 0.59 +1.0
901,523 - CCNA_00835 0.59 +1.3
901,529 - CCNA_00835 0.60 -0.9
901,529 - CCNA_00835 0.60 -0.3
901,529 - CCNA_00835 0.60 -2.0
901,533 - CCNA_00835 0.61 +0.2
901,534 - CCNA_00835 0.61 -0.5
901,534 - CCNA_00835 0.61 +0.3
901,536 + CCNA_00835 0.61 +1.2
901,536 + CCNA_00835 0.61 +3.3
901,536 + CCNA_00835 0.61 +1.7
901,536 + CCNA_00835 0.61 +0.8
901,536 + CCNA_00835 0.61 +0.3
901,536 + CCNA_00835 0.61 +0.5
901,536 + CCNA_00835 0.61 +1.2
901,544 - CCNA_00835 0.62 -1.1
901,544 - CCNA_00835 0.62 -2.1
901,544 - CCNA_00835 0.62 +3.9
901,544 - CCNA_00835 0.62 +0.0
901,544 - CCNA_00835 0.62 +3.3
901,559 + CCNA_00835 0.64 +1.0
901,559 + CCNA_00835 0.64 +0.9
901,567 - CCNA_00835 0.65 -0.7
901,569 - CCNA_00835 0.65 +1.3
901,569 - CCNA_00835 0.65 +1.3
901,618 - CCNA_00835 0.71 -0.0
901,618 - CCNA_00835 0.71 -1.4
901,693 + CCNA_00835 0.80 +2.1
901,694 + CCNA_00835 0.80 +1.7
901,694 + CCNA_00835 0.80 +4.3
901,694 + CCNA_00835 0.80 +1.9
901,694 + CCNA_00835 0.80 +2.5
901,768 - CCNA_00835 0.89 -0.1
901,768 - CCNA_00835 0.89 -0.6
901,771 + CCNA_00835 0.90 +0.7
901,794 + -0.8
901,821 + +1.7
901,869 - +0.7
901,878 + +1.2
901,927 - +1.0
902,027 + +2.3
902,049 + -1.3
902,130 + +0.7
902,177 - -0.0
902,177 - +0.6
902,194 + -0.3
902,202 - +0.7
902,258 + +0.7
902,263 + -0.7
902,266 - -0.0
902,314 + CCNA_00836 0.15 -0.5
902,322 + CCNA_00836 0.16 -0.0
902,322 - CCNA_00836 0.16 -0.2
902,322 - CCNA_00836 0.16 +0.7
902,327 - CCNA_00836 0.17 -0.0
902,331 + CCNA_00836 0.17 +1.3
902,340 - CCNA_00836 0.18 -2.1
902,440 - CCNA_00836 0.30 +2.3
902,488 + CCNA_00836 0.36 -1.3
902,488 + CCNA_00836 0.36 +0.3
902,500 + CCNA_00836 0.38 -1.4
902,510 - CCNA_00836 0.39 +3.3
902,510 - CCNA_00836 0.39 +0.7
902,517 + CCNA_00836 0.40 +1.7
902,557 + CCNA_00836 0.45 -1.2
902,559 + CCNA_00836 0.45 +4.1
902,570 - CCNA_00836 0.46 -1.2
902,570 - CCNA_00836 0.46 -1.4
902,623 + CCNA_00836 0.53 +0.1
902,625 + CCNA_00836 0.53 -1.0
902,632 + CCNA_00836 0.54 +1.3
902,664 - CCNA_00836 0.58 -0.7
902,692 + CCNA_00836 0.61 -1.3
902,698 + CCNA_00836 0.62 +0.3
902,700 - CCNA_00836 0.62 -0.7
902,706 - CCNA_00836 0.63 +2.1
902,719 - CCNA_00836 0.64 +2.3
902,725 - CCNA_00836 0.65 +1.3
902,851 + CCNA_00836 0.80 -0.0
902,851 + CCNA_00836 0.80 -1.2

Or see this region's nucleotide sequence