Experiment: PYE with nitrate 100 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_00603 and CCNA_00604 overlap by 23 nucleotides CCNA_00604 and CCNA_00605 are separated by 109 nucleotides CCNA_00605 and CCNA_00607 are separated by 666 nucleotides
CCNA_00603: CCNA_00603 - integral membrane protein, at 639,155 to 640,153
_00603
CCNA_00604: CCNA_00604 - RDD family membrane protein, at 640,131 to 641,012
_00604
CCNA_00605: CCNA_00605 - hypothetical protein, at 641,122 to 641,910
_00605
CCNA_00607: CCNA_00607 - TonB-dependent receptor, at 642,577 to 645,570
_00607
Position (kb) 641
642 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 640.128 kb on + strand at 640.158 kb on + strand at 640.291 kb on + strand, within CCNA_00604 at 640.301 kb on + strand, within CCNA_00604 at 640.301 kb on + strand, within CCNA_00604 at 640.447 kb on + strand, within CCNA_00604 at 640.457 kb on + strand, within CCNA_00604 at 640.525 kb on + strand, within CCNA_00604 at 640.525 kb on + strand, within CCNA_00604 at 640.525 kb on + strand, within CCNA_00604 at 640.533 kb on - strand, within CCNA_00604 at 640.561 kb on + strand, within CCNA_00604 at 640.568 kb on + strand, within CCNA_00604 at 640.568 kb on + strand, within CCNA_00604 at 640.581 kb on + strand, within CCNA_00604 at 640.581 kb on + strand, within CCNA_00604 at 640.581 kb on + strand, within CCNA_00604 at 640.589 kb on - strand, within CCNA_00604 at 640.589 kb on - strand, within CCNA_00604 at 640.589 kb on - strand, within CCNA_00604 at 640.605 kb on + strand, within CCNA_00604 at 640.643 kb on + strand, within CCNA_00604 at 640.643 kb on + strand, within CCNA_00604 at 640.643 kb on + strand, within CCNA_00604 at 640.643 kb on + strand, within CCNA_00604 at 640.651 kb on - strand, within CCNA_00604 at 640.651 kb on - strand, within CCNA_00604 at 640.651 kb on - strand, within CCNA_00604 at 640.651 kb on - strand, within CCNA_00604 at 640.702 kb on + strand, within CCNA_00604 at 640.702 kb on + strand, within CCNA_00604 at 640.704 kb on + strand, within CCNA_00604 at 640.707 kb on + strand, within CCNA_00604 at 640.709 kb on + strand, within CCNA_00604 at 640.714 kb on + strand, within CCNA_00604 at 640.731 kb on + strand, within CCNA_00604 at 640.741 kb on + strand, within CCNA_00604 at 640.773 kb on - strand, within CCNA_00604 at 640.775 kb on + strand, within CCNA_00604 at 640.775 kb on + strand, within CCNA_00604 at 640.783 kb on - strand, within CCNA_00604 at 640.784 kb on - strand, within CCNA_00604 at 640.784 kb on - strand, within CCNA_00604 at 640.784 kb on - strand, within CCNA_00604 at 640.789 kb on - strand, within CCNA_00604 at 640.856 kb on + strand, within CCNA_00604 at 640.914 kb on + strand, within CCNA_00604 at 640.914 kb on + strand, within CCNA_00604 at 640.944 kb on + strand at 640.944 kb on + strand at 640.949 kb on + strand at 640.949 kb on + strand at 640.949 kb on + strand at 641.025 kb on + strand at 641.028 kb on - strand at 641.164 kb on - strand at 641.170 kb on + strand at 641.186 kb on - strand at 641.219 kb on + strand, within CCNA_00605 at 641.226 kb on - strand, within CCNA_00605 at 641.231 kb on + strand, within CCNA_00605 at 641.233 kb on + strand, within CCNA_00605 at 641.233 kb on + strand, within CCNA_00605 at 641.241 kb on - strand, within CCNA_00605 at 641.245 kb on + strand, within CCNA_00605 at 641.253 kb on - strand, within CCNA_00605 at 641.253 kb on - strand, within CCNA_00605 at 641.253 kb on - strand, within CCNA_00605 at 641.288 kb on - strand, within CCNA_00605 at 641.302 kb on + strand, within CCNA_00605 at 641.302 kb on + strand, within CCNA_00605 at 641.302 kb on + strand, within CCNA_00605 at 641.310 kb on - strand, within CCNA_00605 at 641.310 kb on - strand, within CCNA_00605 at 641.319 kb on + strand, within CCNA_00605 at 641.338 kb on + strand, within CCNA_00605 at 641.338 kb on + strand, within CCNA_00605 at 641.338 kb on + strand, within CCNA_00605 at 641.338 kb on + strand, within CCNA_00605 at 641.346 kb on - strand, within CCNA_00605 at 641.368 kb on - strand, within CCNA_00605 at 641.410 kb on - strand, within CCNA_00605 at 641.427 kb on - strand, within CCNA_00605 at 641.437 kb on + strand, within CCNA_00605 at 641.444 kb on - strand, within CCNA_00605 at 641.444 kb on - strand, within CCNA_00605 at 641.446 kb on + strand, within CCNA_00605 at 641.454 kb on - strand, within CCNA_00605 at 641.458 kb on + strand, within CCNA_00605 at 641.483 kb on - strand, within CCNA_00605 at 641.500 kb on - strand, within CCNA_00605 at 641.546 kb on - strand, within CCNA_00605 at 641.551 kb on + strand, within CCNA_00605 at 641.579 kb on + strand, within CCNA_00605 at 641.584 kb on + strand, within CCNA_00605 at 641.592 kb on - strand, within CCNA_00605 at 641.592 kb on - strand, within CCNA_00605 at 641.592 kb on - strand, within CCNA_00605 at 641.615 kb on - strand, within CCNA_00605 at 641.662 kb on + strand, within CCNA_00605 at 641.671 kb on - strand, within CCNA_00605 at 641.703 kb on - strand, within CCNA_00605 at 641.720 kb on + strand, within CCNA_00605 at 641.732 kb on + strand, within CCNA_00605 at 641.738 kb on + strand, within CCNA_00605 at 641.738 kb on + strand, within CCNA_00605 at 641.745 kb on + strand, within CCNA_00605 at 641.746 kb on - strand, within CCNA_00605 at 641.753 kb on - strand, within CCNA_00605 at 641.763 kb on - strand, within CCNA_00605 at 641.799 kb on + strand, within CCNA_00605 at 641.799 kb on + strand, within CCNA_00605 at 641.799 kb on + strand, within CCNA_00605 at 641.799 kb on + strand, within CCNA_00605 at 641.807 kb on - strand, within CCNA_00605 at 641.807 kb on - strand, within CCNA_00605 at 641.807 kb on - strand, within CCNA_00605 at 641.807 kb on - strand at 641.807 kb on - strand, within CCNA_00605 at 641.807 kb on - strand, within CCNA_00605 at 641.807 kb on - strand, within CCNA_00605 at 641.818 kb on + strand, within CCNA_00605 at 641.823 kb on + strand, within CCNA_00605 at 641.823 kb on - strand, within CCNA_00605 at 641.831 kb on - strand, within CCNA_00605 at 641.831 kb on - strand, within CCNA_00605 at 641.831 kb on - strand, within CCNA_00605 at 641.831 kb on - strand, within CCNA_00605 at 641.831 kb on - strand, within CCNA_00605 at 641.831 kb on - strand, within CCNA_00605 at 641.831 kb on - strand, within CCNA_00605 at 641.831 kb on - strand, within CCNA_00605 at 641.831 kb on - strand, within CCNA_00605 at 641.844 kb on + strand at 641.852 kb on - strand at 641.852 kb on - strand at 641.852 kb on - strand at 641.874 kb on + strand at 641.882 kb on - strand at 641.882 kb on - strand at 641.950 kb on - strand at 641.957 kb on - strand at 641.957 kb on - strand at 641.981 kb on + strand at 641.989 kb on + strand at 641.989 kb on - strand at 641.997 kb on - strand at 641.998 kb on + strand at 642.013 kb on - strand at 642.018 kb on - strand at 642.029 kb on + strand at 642.029 kb on + strand at 642.034 kb on + strand at 642.034 kb on + strand at 642.057 kb on + strand at 642.064 kb on + strand at 642.064 kb on + strand at 642.064 kb on + strand at 642.064 kb on + strand at 642.064 kb on + strand at 642.064 kb on + strand at 642.073 kb on - strand at 642.073 kb on - strand at 642.073 kb on - strand at 642.083 kb on - strand at 642.083 kb on - strand at 642.085 kb on + strand at 642.085 kb on + strand at 642.085 kb on + strand at 642.085 kb on + strand at 642.093 kb on - strand at 642.093 kb on - strand at 642.095 kb on - strand at 642.095 kb on - strand at 642.110 kb on + strand at 642.113 kb on + strand at 642.128 kb on - strand at 642.173 kb on + strand at 642.176 kb on - strand at 642.207 kb on - strand at 642.211 kb on - strand at 642.213 kb on + strand at 642.213 kb on + strand at 642.213 kb on + strand at 642.213 kb on + strand at 642.221 kb on - strand at 642.221 kb on - strand at 642.221 kb on - strand at 642.221 kb on - strand at 642.221 kb on - strand at 642.221 kb on - strand at 642.221 kb on - strand at 642.221 kb on - strand at 642.221 kb on - strand at 642.221 kb on - strand at 642.221 kb on - strand at 642.259 kb on - strand at 642.259 kb on - strand at 642.275 kb on + strand at 642.341 kb on + strand at 642.344 kb on - strand at 642.346 kb on + strand at 642.346 kb on + strand at 642.346 kb on + strand at 642.347 kb on - strand at 642.354 kb on - strand at 642.406 kb on + strand at 642.419 kb on + strand at 642.427 kb on - strand at 642.454 kb on + strand at 642.466 kb on + strand at 642.474 kb on + strand at 642.474 kb on + strand at 642.474 kb on + strand at 642.474 kb on + strand at 642.474 kb on + strand at 642.474 kb on + strand at 642.474 kb on - strand at 642.482 kb on - strand at 642.482 kb on - strand at 642.629 kb on - strand at 642.653 kb on + strand at 642.672 kb on - strand at 642.727 kb on + strand at 642.732 kb on + strand at 642.732 kb on + strand at 642.735 kb on - strand at 642.740 kb on - strand at 642.740 kb on - strand at 642.741 kb on - strand at 642.745 kb on - strand at 642.756 kb on - strand at 642.760 kb on - strand at 642.767 kb on - strand at 642.791 kb on + strand at 642.800 kb on + strand at 642.800 kb on + strand at 642.808 kb on - strand at 642.808 kb on - strand at 642.810 kb on - strand at 642.812 kb on + strand at 642.820 kb on - strand at 642.900 kb on + strand, within CCNA_00607 at 642.901 kb on - strand, within CCNA_00607
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with nitrate 100 mM remove 640,128 + +1.5 640,158 + +0.3 640,291 + CCNA_00604 0.18 -2.0 640,301 + CCNA_00604 0.19 -2.4 640,301 + CCNA_00604 0.19 +1.4 640,447 + CCNA_00604 0.36 +1.4 640,457 + CCNA_00604 0.37 -1.4 640,525 + CCNA_00604 0.45 +0.3 640,525 + CCNA_00604 0.45 -1.0 640,525 + CCNA_00604 0.45 +0.8 640,533 - CCNA_00604 0.46 +0.8 640,561 + CCNA_00604 0.49 -0.0 640,568 + CCNA_00604 0.50 -0.7 640,568 + CCNA_00604 0.50 -0.7 640,581 + CCNA_00604 0.51 -0.2 640,581 + CCNA_00604 0.51 -0.6 640,581 + CCNA_00604 0.51 +0.6 640,589 - CCNA_00604 0.52 +1.7 640,589 - CCNA_00604 0.52 +1.1 640,589 - CCNA_00604 0.52 +1.3 640,605 + CCNA_00604 0.54 -0.6 640,643 + CCNA_00604 0.58 -1.0 640,643 + CCNA_00604 0.58 -0.2 640,643 + CCNA_00604 0.58 -0.2 640,643 + CCNA_00604 0.58 +2.4 640,651 - CCNA_00604 0.59 +0.8 640,651 - CCNA_00604 0.59 -1.6 640,651 - CCNA_00604 0.59 -0.7 640,651 - CCNA_00604 0.59 +0.4 640,702 + CCNA_00604 0.65 -0.4 640,702 + CCNA_00604 0.65 -1.3 640,704 + CCNA_00604 0.65 -0.9 640,707 + CCNA_00604 0.65 -1.0 640,709 + CCNA_00604 0.66 -1.2 640,714 + CCNA_00604 0.66 +1.4 640,731 + CCNA_00604 0.68 -1.4 640,741 + CCNA_00604 0.69 -0.4 640,773 - CCNA_00604 0.73 -1.2 640,775 + CCNA_00604 0.73 +0.7 640,775 + CCNA_00604 0.73 +2.4 640,783 - CCNA_00604 0.74 +0.4 640,784 - CCNA_00604 0.74 -0.3 640,784 - CCNA_00604 0.74 -0.4 640,784 - CCNA_00604 0.74 +0.8 640,789 - CCNA_00604 0.75 +0.1 640,856 + CCNA_00604 0.82 +0.7 640,914 + CCNA_00604 0.89 -0.8 640,914 + CCNA_00604 0.89 -0.4 640,944 + +1.7 640,944 + +0.9 640,949 + -0.7 640,949 + +1.2 640,949 + +0.7 641,025 + +0.7 641,028 - +0.7 641,164 - +1.0 641,170 + -1.3 641,186 - +0.8 641,219 + CCNA_00605 0.12 -0.2 641,226 - CCNA_00605 0.13 +2.2 641,231 + CCNA_00605 0.14 -0.5 641,233 + CCNA_00605 0.14 -0.7 641,233 + CCNA_00605 0.14 +0.8 641,241 - CCNA_00605 0.15 +0.8 641,245 + CCNA_00605 0.16 -1.0 641,253 - CCNA_00605 0.17 +2.2 641,253 - CCNA_00605 0.17 +1.8 641,253 - CCNA_00605 0.17 +1.9 641,288 - CCNA_00605 0.21 +0.6 641,302 + CCNA_00605 0.23 +1.4 641,302 + CCNA_00605 0.23 +2.4 641,302 + CCNA_00605 0.23 +3.0 641,310 - CCNA_00605 0.24 +1.5 641,310 - CCNA_00605 0.24 -0.2 641,319 + CCNA_00605 0.25 +0.4 641,338 + CCNA_00605 0.27 +1.4 641,338 + CCNA_00605 0.27 -0.6 641,338 + CCNA_00605 0.27 -0.6 641,338 + CCNA_00605 0.27 -0.1 641,346 - CCNA_00605 0.28 +2.1 641,368 - CCNA_00605 0.31 +1.5 641,410 - CCNA_00605 0.37 +2.9 641,427 - CCNA_00605 0.39 +1.2 641,437 + CCNA_00605 0.40 -0.4 641,444 - CCNA_00605 0.41 +1.2 641,444 - CCNA_00605 0.41 -0.6 641,446 + CCNA_00605 0.41 -1.3 641,454 - CCNA_00605 0.42 +2.7 641,458 + CCNA_00605 0.43 +1.4 641,483 - CCNA_00605 0.46 +0.3 641,500 - CCNA_00605 0.48 +1.0 641,546 - CCNA_00605 0.54 +1.6 641,551 + CCNA_00605 0.54 +3.4 641,579 + CCNA_00605 0.58 +0.4 641,584 + CCNA_00605 0.59 +1.4 641,592 - CCNA_00605 0.60 +2.1 641,592 - CCNA_00605 0.60 +2.4 641,592 - CCNA_00605 0.60 +1.6 641,615 - CCNA_00605 0.62 +0.6 641,662 + CCNA_00605 0.68 -0.7 641,671 - CCNA_00605 0.70 +0.9 641,703 - CCNA_00605 0.74 +1.7 641,720 + CCNA_00605 0.76 -0.3 641,732 + CCNA_00605 0.77 +2.4 641,738 + CCNA_00605 0.78 -1.6 641,738 + CCNA_00605 0.78 +0.4 641,745 + CCNA_00605 0.79 -0.4 641,746 - CCNA_00605 0.79 +1.4 641,753 - CCNA_00605 0.80 +1.3 641,763 - CCNA_00605 0.81 +2.7 641,799 + CCNA_00605 0.86 -1.7 641,799 + CCNA_00605 0.86 +2.4 641,799 + CCNA_00605 0.86 +2.4 641,799 + CCNA_00605 0.86 -0.7 641,807 - CCNA_00605 0.87 +1.4 641,807 - CCNA_00605 0.87 +0.8 641,807 - CCNA_00605 0.87 +2.2 641,807 - +1.4 641,807 - CCNA_00605 0.87 +1.0 641,807 - CCNA_00605 0.87 +0.2 641,807 - CCNA_00605 0.87 +1.4 641,818 + CCNA_00605 0.88 -0.4 641,823 + CCNA_00605 0.89 -0.9 641,823 - CCNA_00605 0.89 +1.9 641,831 - CCNA_00605 0.90 +2.4 641,831 - CCNA_00605 0.90 +0.8 641,831 - CCNA_00605 0.90 -1.2 641,831 - CCNA_00605 0.90 +0.1 641,831 - CCNA_00605 0.90 +0.3 641,831 - CCNA_00605 0.90 -0.2 641,831 - CCNA_00605 0.90 +0.6 641,831 - CCNA_00605 0.90 -0.1 641,831 - CCNA_00605 0.90 +1.7 641,844 + -0.4 641,852 - +1.4 641,852 - -0.7 641,852 - -2.1 641,874 + +0.8 641,882 - +1.4 641,882 - +0.3 641,950 - +1.4 641,957 - +2.4 641,957 - +0.8 641,981 + +2.4 641,989 + +0.8 641,989 - +0.1 641,997 - -0.9 641,998 + +1.4 642,013 - +2.4 642,018 - -0.4 642,029 + +1.4 642,029 + -1.7 642,034 + -0.2 642,034 + +0.1 642,057 + -0.2 642,064 + +2.0 642,064 + -0.2 642,064 + +2.4 642,064 + -0.5 642,064 + -2.5 642,064 + -1.2 642,073 - -0.4 642,073 - +1.8 642,073 - -1.0 642,083 - -0.2 642,083 - -0.3 642,085 + -0.9 642,085 + +0.6 642,085 + -0.6 642,085 + -1.3 642,093 - +0.4 642,093 - -1.5 642,095 - +0.4 642,095 - +0.1 642,110 + -0.1 642,113 + -0.7 642,128 - +0.8 642,173 + +0.4 642,176 - -2.2 642,207 - -0.7 642,211 - -0.5 642,213 + +1.4 642,213 + +1.4 642,213 + +1.4 642,213 + -0.6 642,221 - +0.1 642,221 - +2.4 642,221 - +0.2 642,221 - -1.7 642,221 - +0.8 642,221 - +1.4 642,221 - +0.8 642,221 - +2.4 642,221 - -0.1 642,221 - +0.1 642,221 - +1.0 642,259 - -1.6 642,259 - +0.7 642,275 + +0.8 642,341 + -0.6 642,344 - -1.7 642,346 + -1.0 642,346 + +0.1 642,346 + -0.9 642,347 - +1.4 642,354 - +1.2 642,406 + +0.4 642,419 + +1.4 642,427 - +1.4 642,454 + -0.2 642,466 + -1.7 642,474 + +1.4 642,474 + +0.8 642,474 + -0.9 642,474 + -0.7 642,474 + +0.4 642,474 + -0.6 642,474 - +1.4 642,482 - +1.4 642,482 - -0.2 642,629 - -0.2 642,653 + +0.4 642,672 - +1.4 642,727 + -0.3 642,732 + +1.4 642,732 + -2.5 642,735 - -0.8 642,740 - -0.4 642,740 - +0.8 642,741 - +0.4 642,745 - +0.8 642,756 - +0.4 642,760 - +0.8 642,767 - -0.6 642,791 + -0.7 642,800 + -0.7 642,800 + -1.2 642,808 - +0.4 642,808 - -1.1 642,810 - -0.2 642,812 + +1.4 642,820 - +1.4 642,900 + CCNA_00607 0.11 +0.1 642,901 - CCNA_00607 0.11 -1.4
Or see this region's nucleotide sequence