Experiment: PYE with nitrate 100 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_00366 and CCNA_00367 overlap by 4 nucleotides CCNA_00367 and CCNA_00368 are separated by 5 nucleotides CCNA_00368 and CCNA_00369 are separated by 149 nucleotides
CCNA_00366: CCNA_00366 - phosphonates transport ATP-binding protein phnC, at 383,009 to 383,803
_00366
CCNA_00367: CCNA_00367 - phosphonates-binding protein, at 383,800 to 384,825
_00367
CCNA_00368: CCNA_00368 - phosphonates transport system permease protein phnE, at 384,831 to 385,667
_00368
CCNA_00369: CCNA_00369 - magnesium and cobalt efflux protein corC-like protein, at 385,817 to 387,130
_00369
Position (kb) 383
384
385 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5 at 382.801 kb on - strand at 382.802 kb on - strand at 382.841 kb on + strand at 382.841 kb on + strand at 382.898 kb on + strand at 382.898 kb on + strand at 382.898 kb on + strand at 382.906 kb on - strand at 382.906 kb on - strand at 382.906 kb on - strand at 382.906 kb on - strand at 382.906 kb on - strand at 382.906 kb on - strand at 382.906 kb on - strand at 382.915 kb on - strand at 382.932 kb on + strand at 382.984 kb on - strand at 382.988 kb on + strand at 383.008 kb on - strand at 383.014 kb on + strand at 383.127 kb on + strand, within CCNA_00366 at 383.145 kb on - strand, within CCNA_00366 at 383.150 kb on + strand, within CCNA_00366 at 383.163 kb on - strand, within CCNA_00366 at 383.178 kb on + strand, within CCNA_00366 at 383.179 kb on - strand, within CCNA_00366 at 383.179 kb on - strand, within CCNA_00366 at 383.186 kb on - strand, within CCNA_00366 at 383.186 kb on - strand, within CCNA_00366 at 383.222 kb on + strand, within CCNA_00366 at 383.222 kb on + strand, within CCNA_00366 at 383.222 kb on + strand, within CCNA_00366 at 383.222 kb on + strand, within CCNA_00366 at 383.230 kb on - strand, within CCNA_00366 at 383.274 kb on - strand, within CCNA_00366 at 383.292 kb on + strand, within CCNA_00366 at 383.300 kb on - strand, within CCNA_00366 at 383.320 kb on + strand, within CCNA_00366 at 383.320 kb on + strand, within CCNA_00366 at 383.353 kb on + strand, within CCNA_00366 at 383.361 kb on - strand, within CCNA_00366 at 383.361 kb on - strand, within CCNA_00366 at 383.363 kb on + strand, within CCNA_00366 at 383.365 kb on - strand, within CCNA_00366 at 383.372 kb on + strand, within CCNA_00366 at 383.406 kb on + strand at 383.417 kb on + strand, within CCNA_00366 at 383.417 kb on + strand, within CCNA_00366 at 383.417 kb on + strand, within CCNA_00366 at 383.417 kb on + strand, within CCNA_00366 at 383.427 kb on + strand, within CCNA_00366 at 383.460 kb on + strand, within CCNA_00366 at 383.491 kb on - strand, within CCNA_00366 at 383.493 kb on + strand, within CCNA_00366 at 383.495 kb on + strand, within CCNA_00366 at 383.520 kb on - strand, within CCNA_00366 at 383.520 kb on - strand, within CCNA_00366 at 383.521 kb on + strand, within CCNA_00366 at 383.546 kb on + strand, within CCNA_00366 at 383.582 kb on + strand, within CCNA_00366 at 383.590 kb on - strand, within CCNA_00366 at 383.605 kb on + strand, within CCNA_00366 at 383.618 kb on + strand, within CCNA_00366 at 383.626 kb on - strand, within CCNA_00366 at 383.636 kb on + strand, within CCNA_00366 at 383.639 kb on - strand, within CCNA_00366 at 383.644 kb on + strand, within CCNA_00366 at 383.644 kb on - strand, within CCNA_00366 at 383.650 kb on + strand, within CCNA_00366 at 383.658 kb on - strand, within CCNA_00366 at 383.658 kb on - strand, within CCNA_00366 at 383.660 kb on - strand, within CCNA_00366 at 383.662 kb on + strand, within CCNA_00366 at 383.667 kb on + strand, within CCNA_00366 at 383.675 kb on - strand, within CCNA_00366 at 383.675 kb on - strand, within CCNA_00366 at 383.686 kb on + strand, within CCNA_00366 at 383.692 kb on - strand, within CCNA_00366 at 383.704 kb on + strand, within CCNA_00366 at 383.705 kb on + strand, within CCNA_00366 at 383.705 kb on + strand, within CCNA_00366 at 383.713 kb on - strand, within CCNA_00366 at 383.760 kb on + strand at 383.787 kb on - strand at 383.829 kb on - strand at 383.839 kb on + strand at 383.845 kb on + strand at 383.845 kb on + strand at 383.853 kb on - strand at 383.853 kb on - strand at 383.853 kb on - strand at 383.864 kb on + strand at 383.869 kb on + strand at 383.869 kb on + strand at 383.877 kb on - strand at 383.922 kb on - strand, within CCNA_00367 at 383.948 kb on - strand, within CCNA_00367 at 383.948 kb on - strand, within CCNA_00367 at 383.959 kb on - strand, within CCNA_00367 at 383.971 kb on - strand, within CCNA_00367 at 383.990 kb on + strand, within CCNA_00367 at 383.990 kb on + strand, within CCNA_00367 at 383.998 kb on - strand, within CCNA_00367 at 384.004 kb on + strand, within CCNA_00367 at 384.033 kb on + strand, within CCNA_00367 at 384.041 kb on - strand, within CCNA_00367 at 384.047 kb on + strand, within CCNA_00367 at 384.061 kb on + strand, within CCNA_00367 at 384.069 kb on - strand, within CCNA_00367 at 384.121 kb on + strand, within CCNA_00367 at 384.165 kb on - strand, within CCNA_00367 at 384.205 kb on + strand, within CCNA_00367 at 384.205 kb on + strand, within CCNA_00367 at 384.205 kb on + strand, within CCNA_00367 at 384.205 kb on + strand, within CCNA_00367 at 384.205 kb on + strand, within CCNA_00367 at 384.205 kb on + strand, within CCNA_00367 at 384.205 kb on + strand, within CCNA_00367 at 384.213 kb on - strand, within CCNA_00367 at 384.213 kb on - strand, within CCNA_00367 at 384.213 kb on - strand, within CCNA_00367 at 384.213 kb on - strand, within CCNA_00367 at 384.213 kb on - strand, within CCNA_00367 at 384.213 kb on - strand, within CCNA_00367 at 384.213 kb on - strand, within CCNA_00367 at 384.214 kb on + strand, within CCNA_00367 at 384.214 kb on + strand, within CCNA_00367 at 384.275 kb on + strand, within CCNA_00367 at 384.283 kb on + strand, within CCNA_00367 at 384.290 kb on + strand, within CCNA_00367 at 384.295 kb on + strand, within CCNA_00367 at 384.298 kb on - strand, within CCNA_00367 at 384.303 kb on - strand, within CCNA_00367 at 384.342 kb on + strand, within CCNA_00367 at 384.354 kb on + strand, within CCNA_00367 at 384.390 kb on + strand, within CCNA_00367 at 384.390 kb on + strand, within CCNA_00367 at 384.403 kb on + strand, within CCNA_00367 at 384.416 kb on - strand, within CCNA_00367 at 384.429 kb on + strand, within CCNA_00367 at 384.429 kb on + strand, within CCNA_00367 at 384.432 kb on - strand, within CCNA_00367 at 384.437 kb on - strand, within CCNA_00367 at 384.437 kb on - strand, within CCNA_00367 at 384.492 kb on + strand, within CCNA_00367 at 384.507 kb on + strand, within CCNA_00367 at 384.507 kb on + strand, within CCNA_00367 at 384.515 kb on - strand, within CCNA_00367 at 384.566 kb on + strand, within CCNA_00367 at 384.574 kb on - strand, within CCNA_00367 at 384.576 kb on + strand, within CCNA_00367 at 384.579 kb on - strand, within CCNA_00367 at 384.606 kb on + strand, within CCNA_00367 at 384.611 kb on + strand, within CCNA_00367 at 384.635 kb on + strand, within CCNA_00367 at 384.635 kb on + strand, within CCNA_00367 at 384.670 kb on - strand, within CCNA_00367 at 384.670 kb on - strand, within CCNA_00367 at 384.708 kb on - strand, within CCNA_00367 at 384.726 kb on + strand at 384.726 kb on + strand at 384.726 kb on + strand at 384.726 kb on + strand at 384.726 kb on + strand at 384.726 kb on + strand at 384.726 kb on + strand at 384.726 kb on + strand at 384.726 kb on + strand at 384.734 kb on - strand at 384.734 kb on - strand at 384.734 kb on - strand at 384.734 kb on - strand at 384.734 kb on - strand at 384.734 kb on - strand at 384.759 kb on - strand at 384.767 kb on + strand at 384.770 kb on - strand at 384.784 kb on + strand at 384.851 kb on + strand at 384.889 kb on + strand at 384.894 kb on + strand at 384.894 kb on + strand at 384.894 kb on + strand at 384.894 kb on + strand at 384.902 kb on - strand at 384.902 kb on - strand at 384.902 kb on - strand at 384.902 kb on - strand at 384.902 kb on - strand at 384.909 kb on + strand at 384.910 kb on + strand at 384.914 kb on + strand at 384.914 kb on + strand at 384.925 kb on + strand, within CCNA_00368 at 384.933 kb on - strand, within CCNA_00368 at 384.933 kb on - strand, within CCNA_00368 at 384.950 kb on + strand, within CCNA_00368 at 384.974 kb on - strand, within CCNA_00368 at 385.010 kb on + strand, within CCNA_00368 at 385.020 kb on + strand, within CCNA_00368 at 385.055 kb on + strand, within CCNA_00368 at 385.077 kb on - strand, within CCNA_00368 at 385.141 kb on - strand, within CCNA_00368 at 385.141 kb on - strand, within CCNA_00368 at 385.182 kb on + strand, within CCNA_00368 at 385.216 kb on + strand, within CCNA_00368 at 385.224 kb on - strand, within CCNA_00368 at 385.229 kb on - strand, within CCNA_00368 at 385.254 kb on + strand, within CCNA_00368 at 385.277 kb on + strand, within CCNA_00368 at 385.279 kb on + strand, within CCNA_00368 at 385.313 kb on + strand, within CCNA_00368 at 385.334 kb on + strand, within CCNA_00368 at 385.415 kb on + strand, within CCNA_00368 at 385.419 kb on - strand, within CCNA_00368 at 385.423 kb on - strand, within CCNA_00368 at 385.424 kb on + strand, within CCNA_00368 at 385.449 kb on + strand, within CCNA_00368 at 385.465 kb on + strand, within CCNA_00368 at 385.465 kb on + strand, within CCNA_00368 at 385.465 kb on + strand, within CCNA_00368 at 385.465 kb on + strand, within CCNA_00368 at 385.470 kb on + strand, within CCNA_00368 at 385.478 kb on - strand, within CCNA_00368 at 385.488 kb on + strand, within CCNA_00368 at 385.509 kb on + strand, within CCNA_00368 at 385.517 kb on - strand, within CCNA_00368 at 385.539 kb on + strand, within CCNA_00368 at 385.604 kb on - strand at 385.643 kb on + strand at 385.645 kb on - strand at 385.656 kb on + strand at 385.656 kb on + strand at 385.656 kb on + strand at 385.656 kb on + strand at 385.661 kb on + strand at 385.661 kb on + strand at 385.664 kb on - strand at 385.664 kb on - strand at 385.664 kb on - strand at 385.666 kb on + strand at 385.666 kb on + strand at 385.666 kb on + strand at 385.666 kb on + strand at 385.666 kb on + strand at 385.666 kb on + strand at 385.714 kb on + strand at 385.721 kb on - strand at 385.721 kb on - strand at 385.757 kb on + strand at 385.760 kb on + strand at 385.798 kb on + strand at 385.814 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with nitrate 100 mM remove 382,801 - -1.6 382,802 - -0.5 382,841 + -1.8 382,841 + -1.1 382,898 + +0.3 382,898 + -0.3 382,898 + -2.0 382,906 - +0.3 382,906 - -0.7 382,906 - -0.6 382,906 - +0.9 382,906 - +1.9 382,906 - +0.9 382,906 - -0.7 382,915 - +0.6 382,932 + -0.6 382,984 - -1.3 382,988 + +1.6 383,008 - -1.7 383,014 + +0.6 383,127 + CCNA_00366 0.15 +0.8 383,145 - CCNA_00366 0.17 +0.3 383,150 + CCNA_00366 0.18 +2.3 383,163 - CCNA_00366 0.19 -1.1 383,178 + CCNA_00366 0.21 +1.8 383,179 - CCNA_00366 0.21 -1.0 383,179 - CCNA_00366 0.21 +1.1 383,186 - CCNA_00366 0.22 -0.3 383,186 - CCNA_00366 0.22 +0.3 383,222 + CCNA_00366 0.27 +1.3 383,222 + CCNA_00366 0.27 +4.9 383,222 + CCNA_00366 0.27 +1.3 383,222 + CCNA_00366 0.27 +1.4 383,230 - CCNA_00366 0.28 -0.0 383,274 - CCNA_00366 0.33 +0.3 383,292 + CCNA_00366 0.36 +3.3 383,300 - CCNA_00366 0.37 +0.1 383,320 + CCNA_00366 0.39 +2.2 383,320 + CCNA_00366 0.39 +1.1 383,353 + CCNA_00366 0.43 +1.2 383,361 - CCNA_00366 0.44 +0.7 383,361 - CCNA_00366 0.44 +0.9 383,363 + CCNA_00366 0.45 +1.2 383,365 - CCNA_00366 0.45 +0.3 383,372 + CCNA_00366 0.46 +2.2 383,406 + +2.9 383,417 + CCNA_00366 0.51 +2.5 383,417 + CCNA_00366 0.51 +0.7 383,417 + CCNA_00366 0.51 +1.8 383,417 + CCNA_00366 0.51 +1.6 383,427 + CCNA_00366 0.53 +2.0 383,460 + CCNA_00366 0.57 +0.8 383,491 - CCNA_00366 0.61 -0.3 383,493 + CCNA_00366 0.61 +1.1 383,495 + CCNA_00366 0.61 +1.1 383,520 - CCNA_00366 0.64 +0.9 383,520 - CCNA_00366 0.64 -0.4 383,521 + CCNA_00366 0.64 +0.7 383,546 + CCNA_00366 0.68 +2.3 383,582 + CCNA_00366 0.72 +2.2 383,590 - CCNA_00366 0.73 -1.6 383,605 + CCNA_00366 0.75 +1.6 383,618 + CCNA_00366 0.77 +0.2 383,626 - CCNA_00366 0.78 +1.3 383,636 + CCNA_00366 0.79 +1.0 383,639 - CCNA_00366 0.79 -1.5 383,644 + CCNA_00366 0.80 +2.9 383,644 - CCNA_00366 0.80 +0.9 383,650 + CCNA_00366 0.81 +2.0 383,658 - CCNA_00366 0.82 +0.9 383,658 - CCNA_00366 0.82 -1.6 383,660 - CCNA_00366 0.82 +0.9 383,662 + CCNA_00366 0.82 +1.8 383,667 + CCNA_00366 0.83 +2.4 383,675 - CCNA_00366 0.84 +0.9 383,675 - CCNA_00366 0.84 -1.5 383,686 + CCNA_00366 0.85 +1.3 383,692 - CCNA_00366 0.86 +0.1 383,704 + CCNA_00366 0.87 +1.3 383,705 + CCNA_00366 0.88 +2.6 383,705 + CCNA_00366 0.88 +1.4 383,713 - CCNA_00366 0.89 +3.4 383,760 + +2.0 383,787 - -0.6 383,829 - -0.7 383,839 + +2.4 383,845 + +3.4 383,845 + +1.0 383,853 - +0.3 383,853 - +0.3 383,853 - -0.1 383,864 + +0.8 383,869 + +3.1 383,869 + +2.6 383,877 - -0.8 383,922 - CCNA_00367 0.12 -0.7 383,948 - CCNA_00367 0.14 +0.3 383,948 - CCNA_00367 0.14 -1.6 383,959 - CCNA_00367 0.15 +1.9 383,971 - CCNA_00367 0.17 -0.1 383,990 + CCNA_00367 0.19 +0.6 383,990 + CCNA_00367 0.19 +2.0 383,998 - CCNA_00367 0.19 +2.5 384,004 + CCNA_00367 0.20 +3.9 384,033 + CCNA_00367 0.23 +1.9 384,041 - CCNA_00367 0.23 +1.9 384,047 + CCNA_00367 0.24 +1.1 384,061 + CCNA_00367 0.25 +1.3 384,069 - CCNA_00367 0.26 -1.5 384,121 + CCNA_00367 0.31 +1.0 384,165 - CCNA_00367 0.36 -0.1 384,205 + CCNA_00367 0.39 +0.8 384,205 + CCNA_00367 0.39 +2.7 384,205 + CCNA_00367 0.39 +1.8 384,205 + CCNA_00367 0.39 +1.6 384,205 + CCNA_00367 0.39 +1.8 384,205 + CCNA_00367 0.39 -0.0 384,205 + CCNA_00367 0.39 +2.1 384,213 - CCNA_00367 0.40 +0.3 384,213 - CCNA_00367 0.40 -1.1 384,213 - CCNA_00367 0.40 -2.5 384,213 - CCNA_00367 0.40 +0.3 384,213 - CCNA_00367 0.40 +0.3 384,213 - CCNA_00367 0.40 +0.3 384,213 - CCNA_00367 0.40 -0.3 384,214 + CCNA_00367 0.40 +1.2 384,214 + CCNA_00367 0.40 +1.8 384,275 + CCNA_00367 0.46 +1.9 384,283 + CCNA_00367 0.47 -2.0 384,290 + CCNA_00367 0.48 +1.7 384,295 + CCNA_00367 0.48 +2.2 384,298 - CCNA_00367 0.49 +1.2 384,303 - CCNA_00367 0.49 +1.6 384,342 + CCNA_00367 0.53 +1.9 384,354 + CCNA_00367 0.54 +0.9 384,390 + CCNA_00367 0.58 +1.4 384,390 + CCNA_00367 0.58 +2.3 384,403 + CCNA_00367 0.59 +2.6 384,416 - CCNA_00367 0.60 +0.7 384,429 + CCNA_00367 0.61 +1.6 384,429 + CCNA_00367 0.61 +1.1 384,432 - CCNA_00367 0.62 -0.4 384,437 - CCNA_00367 0.62 +0.0 384,437 - CCNA_00367 0.62 +0.3 384,492 + CCNA_00367 0.67 +1.9 384,507 + CCNA_00367 0.69 +1.5 384,507 + CCNA_00367 0.69 +1.9 384,515 - CCNA_00367 0.70 +1.4 384,566 + CCNA_00367 0.75 +1.6 384,574 - CCNA_00367 0.75 +1.1 384,576 + CCNA_00367 0.76 +1.1 384,579 - CCNA_00367 0.76 +1.3 384,606 + CCNA_00367 0.79 +1.9 384,611 + CCNA_00367 0.79 +1.2 384,635 + CCNA_00367 0.81 +0.8 384,635 + CCNA_00367 0.81 +1.7 384,670 - CCNA_00367 0.85 -1.1 384,670 - CCNA_00367 0.85 +0.9 384,708 - CCNA_00367 0.88 -0.7 384,726 + +1.7 384,726 + +2.2 384,726 + +4.2 384,726 + +2.1 384,726 + +1.9 384,726 + +1.6 384,726 + +1.2 384,726 + +2.3 384,726 + +1.8 384,734 - -0.1 384,734 - +1.9 384,734 - +0.3 384,734 - -0.4 384,734 - +0.1 384,734 - +3.9 384,759 - +0.1 384,767 + +1.0 384,770 - -0.5 384,784 + +2.4 384,851 + +1.5 384,889 + +2.4 384,894 + +1.7 384,894 + +1.8 384,894 + +2.6 384,894 + +1.5 384,902 - +1.7 384,902 - -0.7 384,902 - +0.9 384,902 - +0.1 384,902 - +0.2 384,909 + +1.0 384,910 + +2.0 384,914 + +2.0 384,914 + +1.7 384,925 + CCNA_00368 0.11 +1.7 384,933 - CCNA_00368 0.12 -1.2 384,933 - CCNA_00368 0.12 -0.1 384,950 + CCNA_00368 0.14 +2.7 384,974 - CCNA_00368 0.17 -1.1 385,010 + CCNA_00368 0.21 +2.1 385,020 + CCNA_00368 0.23 +1.3 385,055 + CCNA_00368 0.27 +1.5 385,077 - CCNA_00368 0.29 -1.6 385,141 - CCNA_00368 0.37 -1.3 385,141 - CCNA_00368 0.37 -0.1 385,182 + CCNA_00368 0.42 +1.5 385,216 + CCNA_00368 0.46 +2.0 385,224 - CCNA_00368 0.47 +1.4 385,229 - CCNA_00368 0.48 +2.9 385,254 + CCNA_00368 0.51 +2.2 385,277 + CCNA_00368 0.53 +2.1 385,279 + CCNA_00368 0.54 +2.4 385,313 + CCNA_00368 0.58 +2.1 385,334 + CCNA_00368 0.60 +2.3 385,415 + CCNA_00368 0.70 +1.3 385,419 - CCNA_00368 0.70 +0.9 385,423 - CCNA_00368 0.71 +0.3 385,424 + CCNA_00368 0.71 +1.4 385,449 + CCNA_00368 0.74 +2.6 385,465 + CCNA_00368 0.76 +1.6 385,465 + CCNA_00368 0.76 +2.2 385,465 + CCNA_00368 0.76 +2.4 385,465 + CCNA_00368 0.76 +1.2 385,470 + CCNA_00368 0.76 +2.1 385,478 - CCNA_00368 0.77 +0.4 385,488 + CCNA_00368 0.78 +2.0 385,509 + CCNA_00368 0.81 +2.9 385,517 - CCNA_00368 0.82 +1.6 385,539 + CCNA_00368 0.85 +1.9 385,604 - +0.1 385,643 + +2.3 385,645 - -0.5 385,656 + +2.3 385,656 + +2.4 385,656 + +2.3 385,656 + +1.7 385,661 + +1.7 385,661 + +1.5 385,664 - +0.9 385,664 - -1.0 385,664 - +0.3 385,666 + +2.1 385,666 + +1.4 385,666 + +0.6 385,666 + +2.2 385,666 + +2.0 385,666 + +1.9 385,714 + -0.6 385,721 - -2.0 385,721 - -2.3 385,757 + +0.3 385,760 + -0.3 385,798 + -0.2 385,814 + -0.7
Or see this region's nucleotide sequence