Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00230

Experiment: PYE with nitrate 100 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00229 and CCNA_00230 are separated by 0 nucleotidesCCNA_00230 and CCNA_00231 are separated by 51 nucleotidesCCNA_00231 and CCNA_00232 overlap by 4 nucleotides CCNA_00229: CCNA_00229 - CAAX amino terminal protease family protein, at 244,790 to 245,764 _00229 CCNA_00230: CCNA_00230 - ribosomal large subunit pseudouridine synthase B, at 245,765 to 247,003 _00230 CCNA_00231: CCNA_00231 - tRNA-specific adenosine deaminase, at 247,055 to 247,540 _00231 CCNA_00232: CCNA_00232 - hypothetical protein, at 247,537 to 247,953 _00232 Position (kb) 245 246 247 248Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 244.766 kb on - strandat 244.766 kb on - strandat 244.766 kb on - strandat 244.803 kb on + strandat 244.807 kb on + strandat 244.807 kb on + strandat 244.807 kb on + strandat 244.807 kb on + strandat 244.807 kb on + strandat 244.807 kb on + strandat 244.811 kb on - strandat 244.813 kb on - strandat 244.815 kb on - strandat 244.815 kb on - strandat 244.815 kb on - strandat 244.815 kb on - strandat 244.872 kb on + strandat 244.924 kb on + strand, within CCNA_00229at 244.927 kb on - strand, within CCNA_00229at 244.943 kb on + strand, within CCNA_00229at 244.950 kb on + strand, within CCNA_00229at 244.950 kb on + strand, within CCNA_00229at 244.951 kb on - strand, within CCNA_00229at 244.951 kb on - strand, within CCNA_00229at 244.951 kb on - strand, within CCNA_00229at 244.951 kb on - strand, within CCNA_00229at 244.951 kb on - strand, within CCNA_00229at 244.951 kb on - strand, within CCNA_00229at 244.975 kb on + strand, within CCNA_00229at 245.002 kb on + strand, within CCNA_00229at 245.054 kb on + strand, within CCNA_00229at 245.056 kb on + strand, within CCNA_00229at 245.060 kb on + strand, within CCNA_00229at 245.060 kb on + strand, within CCNA_00229at 245.060 kb on + strand, within CCNA_00229at 245.079 kb on + strand, within CCNA_00229at 245.093 kb on - strand, within CCNA_00229at 245.096 kb on + strand, within CCNA_00229at 245.194 kb on - strand, within CCNA_00229at 245.194 kb on - strand, within CCNA_00229at 245.194 kb on - strand, within CCNA_00229at 245.194 kb on - strand, within CCNA_00229at 245.196 kb on + strand, within CCNA_00229at 245.196 kb on + strand, within CCNA_00229at 245.201 kb on + strand, within CCNA_00229at 245.204 kb on - strand, within CCNA_00229at 245.204 kb on - strand, within CCNA_00229at 245.204 kb on - strand, within CCNA_00229at 245.206 kb on + strand, within CCNA_00229at 245.209 kb on - strand, within CCNA_00229at 245.209 kb on - strand, within CCNA_00229at 245.214 kb on - strand, within CCNA_00229at 245.215 kb on + strand, within CCNA_00229at 245.257 kb on - strand, within CCNA_00229at 245.270 kb on - strand, within CCNA_00229at 245.285 kb on + strand, within CCNA_00229at 245.297 kb on - strand, within CCNA_00229at 245.297 kb on - strand, within CCNA_00229at 245.307 kb on - strand, within CCNA_00229at 245.402 kb on + strand, within CCNA_00229at 245.402 kb on + strand, within CCNA_00229at 245.424 kb on + strand, within CCNA_00229at 245.441 kb on + strand, within CCNA_00229at 245.449 kb on - strand, within CCNA_00229at 245.476 kb on - strand, within CCNA_00229at 245.486 kb on + strand, within CCNA_00229at 245.494 kb on - strand, within CCNA_00229at 245.508 kb on + strandat 245.508 kb on + strand, within CCNA_00229at 245.513 kb on + strand, within CCNA_00229at 245.518 kb on + strand, within CCNA_00229at 245.518 kb on + strand, within CCNA_00229at 245.519 kb on + strand, within CCNA_00229at 245.521 kb on - strand, within CCNA_00229at 245.526 kb on - strand, within CCNA_00229at 245.537 kb on - strand, within CCNA_00229at 245.573 kb on + strand, within CCNA_00229at 245.573 kb on + strand, within CCNA_00229at 245.573 kb on + strand, within CCNA_00229at 245.620 kb on + strand, within CCNA_00229at 245.651 kb on - strand, within CCNA_00229at 245.656 kb on - strand, within CCNA_00229at 245.666 kb on + strand, within CCNA_00229at 245.666 kb on + strand, within CCNA_00229at 245.667 kb on + strandat 245.668 kb on + strandat 245.674 kb on - strandat 245.701 kb on + strandat 245.702 kb on - strandat 245.709 kb on - strandat 245.720 kb on + strandat 245.720 kb on + strandat 245.723 kb on - strandat 245.723 kb on - strandat 245.723 kb on - strandat 245.728 kb on + strandat 245.733 kb on + strandat 245.733 kb on + strandat 245.733 kb on + strandat 245.738 kb on + strandat 245.741 kb on - strandat 245.741 kb on - strandat 245.761 kb on - strandat 245.776 kb on - strandat 245.780 kb on + strandat 245.836 kb on - strandat 245.926 kb on - strand, within CCNA_00230at 245.948 kb on - strand, within CCNA_00230at 245.948 kb on - strand, within CCNA_00230at 245.977 kb on - strand, within CCNA_00230at 245.982 kb on + strand, within CCNA_00230at 245.990 kb on - strand, within CCNA_00230at 245.990 kb on - strand, within CCNA_00230at 246.001 kb on - strandat 246.013 kb on + strand, within CCNA_00230at 246.032 kb on - strand, within CCNA_00230at 246.043 kb on - strand, within CCNA_00230at 246.043 kb on - strand, within CCNA_00230at 246.058 kb on + strand, within CCNA_00230at 246.066 kb on - strand, within CCNA_00230at 246.066 kb on - strand, within CCNA_00230at 246.074 kb on - strand, within CCNA_00230at 246.168 kb on + strand, within CCNA_00230at 246.176 kb on - strandat 246.176 kb on - strand, within CCNA_00230at 246.202 kb on - strand, within CCNA_00230at 246.213 kb on + strand, within CCNA_00230at 246.213 kb on + strand, within CCNA_00230at 246.213 kb on + strand, within CCNA_00230at 246.213 kb on - strand, within CCNA_00230at 246.257 kb on - strand, within CCNA_00230at 246.280 kb on + strand, within CCNA_00230at 246.309 kb on + strand, within CCNA_00230at 246.319 kb on + strand, within CCNA_00230at 246.327 kb on - strand, within CCNA_00230at 246.343 kb on - strand, within CCNA_00230at 246.359 kb on + strand, within CCNA_00230at 246.374 kb on - strand, within CCNA_00230at 246.376 kb on + strand, within CCNA_00230at 246.384 kb on - strand, within CCNA_00230at 246.427 kb on + strand, within CCNA_00230at 246.448 kb on + strand, within CCNA_00230at 246.448 kb on + strand, within CCNA_00230at 246.495 kb on + strand, within CCNA_00230at 246.495 kb on + strand, within CCNA_00230at 246.500 kb on + strand, within CCNA_00230at 246.503 kb on - strand, within CCNA_00230at 246.503 kb on - strand, within CCNA_00230at 246.508 kb on - strand, within CCNA_00230at 246.508 kb on - strand, within CCNA_00230at 246.508 kb on - strand, within CCNA_00230at 246.551 kb on - strand, within CCNA_00230at 246.562 kb on + strand, within CCNA_00230at 246.562 kb on + strand, within CCNA_00230at 246.570 kb on - strand, within CCNA_00230at 246.570 kb on - strand, within CCNA_00230at 246.601 kb on + strand, within CCNA_00230at 246.609 kb on + strand, within CCNA_00230at 246.609 kb on + strand, within CCNA_00230at 246.617 kb on + strand, within CCNA_00230at 246.625 kb on - strand, within CCNA_00230at 246.657 kb on + strand, within CCNA_00230at 246.665 kb on - strand, within CCNA_00230at 246.665 kb on - strand, within CCNA_00230at 246.665 kb on - strand, within CCNA_00230at 246.665 kb on - strand, within CCNA_00230at 246.665 kb on - strand, within CCNA_00230at 246.665 kb on - strand, within CCNA_00230at 246.727 kb on + strand, within CCNA_00230at 246.735 kb on - strand, within CCNA_00230at 246.765 kb on + strand, within CCNA_00230at 246.786 kb on - strand, within CCNA_00230at 246.824 kb on + strand, within CCNA_00230at 246.832 kb on - strand, within CCNA_00230at 246.858 kb on + strand, within CCNA_00230at 246.866 kb on - strand, within CCNA_00230at 246.866 kb on - strand, within CCNA_00230at 246.884 kb on - strandat 246.905 kb on + strandat 246.913 kb on - strandat 246.936 kb on - strandat 246.960 kb on + strandat 246.977 kb on + strandat 246.980 kb on - strandat 247.018 kb on + strandat 247.021 kb on - strandat 247.021 kb on - strandat 247.021 kb on - strandat 247.040 kb on + strandat 247.072 kb on - strandat 247.076 kb on + strandat 247.084 kb on - strandat 247.084 kb on - strandat 247.522 kb on + strandat 247.522 kb on + strandat 247.530 kb on - strandat 247.558 kb on + strandat 247.582 kb on + strand, within CCNA_00232at 247.587 kb on + strand, within CCNA_00232at 247.587 kb on + strand, within CCNA_00232at 247.595 kb on - strand, within CCNA_00232at 247.609 kb on - strand, within CCNA_00232at 247.633 kb on + strand, within CCNA_00232at 247.654 kb on - strand, within CCNA_00232at 247.656 kb on + strand, within CCNA_00232at 247.659 kb on - strand, within CCNA_00232at 247.664 kb on - strand, within CCNA_00232at 247.664 kb on - strand, within CCNA_00232at 247.664 kb on - strand, within CCNA_00232at 247.672 kb on - strand, within CCNA_00232at 247.673 kb on + strand, within CCNA_00232at 247.686 kb on - strand, within CCNA_00232at 247.692 kb on - strand, within CCNA_00232at 247.709 kb on + strand, within CCNA_00232at 247.709 kb on + strand, within CCNA_00232at 247.715 kb on + strand, within CCNA_00232at 247.717 kb on - strand, within CCNA_00232at 247.722 kb on - strand, within CCNA_00232at 247.732 kb on - strand, within CCNA_00232at 247.750 kb on + strand, within CCNA_00232at 247.750 kb on + strand, within CCNA_00232at 247.758 kb on - strand, within CCNA_00232at 247.758 kb on - strand, within CCNA_00232at 247.759 kb on + strand, within CCNA_00232at 247.808 kb on + strand, within CCNA_00232at 247.816 kb on - strand, within CCNA_00232at 247.816 kb on - strand, within CCNA_00232at 247.824 kb on + strand, within CCNA_00232at 247.850 kb on - strand, within CCNA_00232at 247.864 kb on - strand, within CCNA_00232at 247.864 kb on - strand, within CCNA_00232at 247.864 kb on - strand, within CCNA_00232at 247.889 kb on - strand, within CCNA_00232at 247.975 kb on + strandat 247.994 kb on - strandat 247.994 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with nitrate 100 mM
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244,766 - -0.1
244,766 - -0.7
244,766 - +1.9
244,803 + -0.7
244,807 + +0.7
244,807 + -1.1
244,807 + -2.0
244,807 + +0.9
244,807 + +1.3
244,807 + +0.9
244,811 - +0.3
244,813 - +0.9
244,815 - -2.1
244,815 - -0.1
244,815 - -0.0
244,815 - -0.1
244,872 + -0.5
244,924 + CCNA_00229 0.14 -0.2
244,927 - CCNA_00229 0.14 -2.0
244,943 + CCNA_00229 0.16 +0.5
244,950 + CCNA_00229 0.16 -1.7
244,950 + CCNA_00229 0.16 -2.0
244,951 - CCNA_00229 0.17 -0.5
244,951 - CCNA_00229 0.17 -0.1
244,951 - CCNA_00229 0.17 +0.3
244,951 - CCNA_00229 0.17 +1.0
244,951 - CCNA_00229 0.17 +0.3
244,951 - CCNA_00229 0.17 -2.5
244,975 + CCNA_00229 0.19 -0.9
245,002 + CCNA_00229 0.22 -1.7
245,054 + CCNA_00229 0.27 +1.3
245,056 + CCNA_00229 0.27 -2.5
245,060 + CCNA_00229 0.28 -1.3
245,060 + CCNA_00229 0.28 +0.3
245,060 + CCNA_00229 0.28 +1.1
245,079 + CCNA_00229 0.30 +0.9
245,093 - CCNA_00229 0.31 -3.7
245,096 + CCNA_00229 0.31 +0.3
245,194 - CCNA_00229 0.41 -1.0
245,194 - CCNA_00229 0.41 -0.1
245,194 - CCNA_00229 0.41 +0.9
245,194 - CCNA_00229 0.41 -1.4
245,196 + CCNA_00229 0.42 -0.4
245,196 + CCNA_00229 0.42 -1.0
245,201 + CCNA_00229 0.42 -0.4
245,204 - CCNA_00229 0.42 +1.1
245,204 - CCNA_00229 0.42 -0.4
245,204 - CCNA_00229 0.42 -0.8
245,206 + CCNA_00229 0.43 +0.1
245,209 - CCNA_00229 0.43 -1.1
245,209 - CCNA_00229 0.43 +1.9
245,214 - CCNA_00229 0.43 -1.9
245,215 + CCNA_00229 0.44 -0.3
245,257 - CCNA_00229 0.48 -0.2
245,270 - CCNA_00229 0.49 -0.7
245,285 + CCNA_00229 0.51 +1.9
245,297 - CCNA_00229 0.52 +1.9
245,297 - CCNA_00229 0.52 -1.2
245,307 - CCNA_00229 0.53 -1.0
245,402 + CCNA_00229 0.63 +2.5
245,402 + CCNA_00229 0.63 -0.3
245,424 + CCNA_00229 0.65 +1.3
245,441 + CCNA_00229 0.67 -0.4
245,449 - CCNA_00229 0.68 +0.9
245,476 - CCNA_00229 0.70 -1.2
245,486 + CCNA_00229 0.71 -1.1
245,494 - CCNA_00229 0.72 -0.2
245,508 + +1.9
245,508 + CCNA_00229 0.74 -2.7
245,513 + CCNA_00229 0.74 -1.1
245,518 + CCNA_00229 0.75 -1.1
245,518 + CCNA_00229 0.75 -0.8
245,519 + CCNA_00229 0.75 -0.9
245,521 - CCNA_00229 0.75 +3.9
245,526 - CCNA_00229 0.75 +0.9
245,537 - CCNA_00229 0.77 -1.8
245,573 + CCNA_00229 0.80 +1.1
245,573 + CCNA_00229 0.80 +1.9
245,573 + CCNA_00229 0.80 -0.1
245,620 + CCNA_00229 0.85 +0.7
245,651 - CCNA_00229 0.88 -0.9
245,656 - CCNA_00229 0.89 +0.8
245,666 + CCNA_00229 0.90 -0.8
245,666 + CCNA_00229 0.90 +0.6
245,667 + +1.9
245,668 + -0.1
245,674 - -0.9
245,701 + +0.6
245,702 - -0.7
245,709 - -0.4
245,720 + -2.1
245,720 + -0.4
245,723 - -0.2
245,723 - +0.9
245,723 - +0.4
245,728 + -0.5
245,733 + +0.6
245,733 + +1.7
245,733 + +1.2
245,738 + +1.3
245,741 - -1.2
245,741 - +0.2
245,761 - -0.0
245,776 - +0.2
245,780 + +2.3
245,836 - +1.2
245,926 - CCNA_00230 0.13 +0.5
245,948 - CCNA_00230 0.15 +1.4
245,948 - CCNA_00230 0.15 +0.2
245,977 - CCNA_00230 0.17 +1.1
245,982 + CCNA_00230 0.18 -1.2
245,990 - CCNA_00230 0.18 -0.8
245,990 - CCNA_00230 0.18 +0.9
246,001 - +1.9
246,013 + CCNA_00230 0.20 -0.1
246,032 - CCNA_00230 0.22 -0.1
246,043 - CCNA_00230 0.22 +1.6
246,043 - CCNA_00230 0.22 +0.7
246,058 + CCNA_00230 0.24 +2.9
246,066 - CCNA_00230 0.24 +1.4
246,066 - CCNA_00230 0.24 +1.5
246,074 - CCNA_00230 0.25 -0.8
246,168 + CCNA_00230 0.33 -1.1
246,176 - +1.9
246,176 - CCNA_00230 0.33 -0.3
246,202 - CCNA_00230 0.35 +1.1
246,213 + CCNA_00230 0.36 +0.3
246,213 + CCNA_00230 0.36 -2.2
246,213 + CCNA_00230 0.36 -1.2
246,213 - CCNA_00230 0.36 +1.2
246,257 - CCNA_00230 0.40 -0.2
246,280 + CCNA_00230 0.42 -1.1
246,309 + CCNA_00230 0.44 +1.9
246,319 + CCNA_00230 0.45 +2.7
246,327 - CCNA_00230 0.45 +0.3
246,343 - CCNA_00230 0.47 +0.9
246,359 + CCNA_00230 0.48 -1.7
246,374 - CCNA_00230 0.49 +0.3
246,376 + CCNA_00230 0.49 -1.7
246,384 - CCNA_00230 0.50 +0.3
246,427 + CCNA_00230 0.53 +0.9
246,448 + CCNA_00230 0.55 -0.7
246,448 + CCNA_00230 0.55 -0.8
246,495 + CCNA_00230 0.59 +1.6
246,495 + CCNA_00230 0.59 +1.9
246,500 + CCNA_00230 0.59 +0.3
246,503 - CCNA_00230 0.60 +0.6
246,503 - CCNA_00230 0.60 +1.2
246,508 - CCNA_00230 0.60 -0.1
246,508 - CCNA_00230 0.60 +1.3
246,508 - CCNA_00230 0.60 +1.6
246,551 - CCNA_00230 0.63 +0.9
246,562 + CCNA_00230 0.64 +1.9
246,562 + CCNA_00230 0.64 -1.2
246,570 - CCNA_00230 0.65 +1.9
246,570 - CCNA_00230 0.65 +0.9
246,601 + CCNA_00230 0.67 -0.9
246,609 + CCNA_00230 0.68 +0.0
246,609 + CCNA_00230 0.68 -0.1
246,617 + CCNA_00230 0.69 -0.4
246,625 - CCNA_00230 0.69 +0.6
246,657 + CCNA_00230 0.72 +2.9
246,665 - CCNA_00230 0.73 +0.7
246,665 - CCNA_00230 0.73 +0.3
246,665 - CCNA_00230 0.73 +1.1
246,665 - CCNA_00230 0.73 +0.6
246,665 - CCNA_00230 0.73 +1.2
246,665 - CCNA_00230 0.73 +1.2
246,727 + CCNA_00230 0.78 -0.1
246,735 - CCNA_00230 0.78 +0.6
246,765 + CCNA_00230 0.81 -0.9
246,786 - CCNA_00230 0.82 -1.2
246,824 + CCNA_00230 0.85 +1.7
246,832 - CCNA_00230 0.86 +1.0
246,858 + CCNA_00230 0.88 -1.2
246,866 - CCNA_00230 0.89 +1.2
246,866 - CCNA_00230 0.89 +1.1
246,884 - -1.3
246,905 + -0.9
246,913 - +3.5
246,936 - +1.9
246,960 + +2.7
246,977 + -0.9
246,980 - +0.9
247,018 + -1.1
247,021 - -2.7
247,021 - -2.0
247,021 - -0.2
247,040 + -0.7
247,072 - +0.0
247,076 + -1.2
247,084 - +0.9
247,084 - -0.4
247,522 + +1.2
247,522 + +0.7
247,530 - -0.4
247,558 + -0.7
247,582 + CCNA_00232 0.11 -0.4
247,587 + CCNA_00232 0.12 +0.9
247,587 + CCNA_00232 0.12 +1.5
247,595 - CCNA_00232 0.14 +2.3
247,609 - CCNA_00232 0.17 -0.4
247,633 + CCNA_00232 0.23 -1.1
247,654 - CCNA_00232 0.28 -0.4
247,656 + CCNA_00232 0.29 +0.6
247,659 - CCNA_00232 0.29 +0.2
247,664 - CCNA_00232 0.30 -0.2
247,664 - CCNA_00232 0.30 +0.5
247,664 - CCNA_00232 0.30 -0.1
247,672 - CCNA_00232 0.32 +0.9
247,673 + CCNA_00232 0.33 -0.4
247,686 - CCNA_00232 0.36 -1.5
247,692 - CCNA_00232 0.37 -0.2
247,709 + CCNA_00232 0.41 +0.9
247,709 + CCNA_00232 0.41 +2.5
247,715 + CCNA_00232 0.43 +1.3
247,717 - CCNA_00232 0.43 -0.3
247,722 - CCNA_00232 0.44 +1.2
247,732 - CCNA_00232 0.47 +1.6
247,750 + CCNA_00232 0.51 +1.5
247,750 + CCNA_00232 0.51 +1.3
247,758 - CCNA_00232 0.53 +1.3
247,758 - CCNA_00232 0.53 -1.4
247,759 + CCNA_00232 0.53 +0.1
247,808 + CCNA_00232 0.65 -2.5
247,816 - CCNA_00232 0.67 +1.0
247,816 - CCNA_00232 0.67 +1.2
247,824 + CCNA_00232 0.69 -0.1
247,850 - CCNA_00232 0.75 +1.1
247,864 - CCNA_00232 0.78 -0.1
247,864 - CCNA_00232 0.78 -0.7
247,864 - CCNA_00232 0.78 +1.5
247,889 - CCNA_00232 0.84 +0.3
247,975 + -1.0
247,994 - +0.9
247,994 - -0.2

Or see this region's nucleotide sequence