Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00108

Experiment: PYE with nitrate 100 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00106 and CCNA_00107 are separated by 160 nucleotidesCCNA_00107 and CCNA_00108 are separated by 9 nucleotidesCCNA_00108 and CCNA_00109 are separated by 15 nucleotides CCNA_00106: CCNA_00106 - 2-polyprenyl-6-methoxyphenol hydroxylase, at 116,834 to 118,099 _00106 CCNA_00107: CCNA_00107 - Trm112p-like protein, at 118,260 to 118,457 _00107 CCNA_00108: CCNA_00108 - lon endopeptidase-related protein, at 118,467 to 119,144 _00108 CCNA_00109: CCNA_00109 - thioredoxin, at 119,160 to 120,059 _00109 Position (kb) 118 119 120Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 118.069 kb on + strandat 118.086 kb on + strandat 118.094 kb on + strandat 118.162 kb on + strandat 118.165 kb on - strandat 118.170 kb on - strandat 118.170 kb on - strandat 118.175 kb on - strandat 118.177 kb on + strandat 118.231 kb on - strandat 118.254 kb on - strandat 118.264 kb on - strandat 118.290 kb on - strand, within CCNA_00107at 118.461 kb on - strandat 118.461 kb on - strandat 118.461 kb on - strandat 118.465 kb on + strandat 118.521 kb on - strandat 118.521 kb on - strandat 118.561 kb on + strand, within CCNA_00108at 118.615 kb on + strand, within CCNA_00108at 118.615 kb on + strand, within CCNA_00108at 118.623 kb on - strand, within CCNA_00108at 118.628 kb on - strand, within CCNA_00108at 118.629 kb on + strand, within CCNA_00108at 118.687 kb on - strand, within CCNA_00108at 118.699 kb on - strandat 118.752 kb on + strand, within CCNA_00108at 118.762 kb on + strand, within CCNA_00108at 118.770 kb on - strand, within CCNA_00108at 118.770 kb on - strand, within CCNA_00108at 118.796 kb on - strand, within CCNA_00108at 118.817 kb on + strand, within CCNA_00108at 118.825 kb on - strand, within CCNA_00108at 118.828 kb on + strand, within CCNA_00108at 118.836 kb on - strand, within CCNA_00108at 118.848 kb on + strand, within CCNA_00108at 118.860 kb on - strand, within CCNA_00108at 118.881 kb on - strand, within CCNA_00108at 118.881 kb on - strand, within CCNA_00108at 118.893 kb on + strand, within CCNA_00108at 118.906 kb on + strand, within CCNA_00108at 118.914 kb on - strand, within CCNA_00108at 118.925 kb on + strand, within CCNA_00108at 118.928 kb on - strand, within CCNA_00108at 118.928 kb on - strand, within CCNA_00108at 118.933 kb on - strand, within CCNA_00108at 118.973 kb on + strand, within CCNA_00108at 119.018 kb on + strand, within CCNA_00108at 119.026 kb on - strand, within CCNA_00108at 119.033 kb on + strand, within CCNA_00108at 119.033 kb on + strand, within CCNA_00108at 119.041 kb on - strand, within CCNA_00108at 119.054 kb on + strand, within CCNA_00108at 119.059 kb on + strand, within CCNA_00108at 119.080 kb on - strandat 119.080 kb on - strandat 119.102 kb on - strandat 119.104 kb on + strandat 119.151 kb on - strandat 119.151 kb on - strandat 119.153 kb on + strandat 119.170 kb on - strandat 119.171 kb on - strandat 119.173 kb on + strandat 119.178 kb on + strandat 119.190 kb on - strandat 119.191 kb on - strandat 119.197 kb on + strandat 119.198 kb on + strandat 119.207 kb on + strandat 119.215 kb on - strandat 119.235 kb on - strandat 119.239 kb on + strandat 119.247 kb on - strandat 119.311 kb on + strand, within CCNA_00109at 119.337 kb on + strand, within CCNA_00109at 119.344 kb on + strand, within CCNA_00109at 119.344 kb on + strand, within CCNA_00109at 119.344 kb on + strand, within CCNA_00109at 119.344 kb on + strand, within CCNA_00109at 119.345 kb on - strand, within CCNA_00109at 119.345 kb on - strand, within CCNA_00109at 119.345 kb on - strand, within CCNA_00109at 119.352 kb on - strand, within CCNA_00109at 119.352 kb on - strand, within CCNA_00109at 119.354 kb on + strand, within CCNA_00109at 119.407 kb on - strand, within CCNA_00109at 119.439 kb on + strand, within CCNA_00109at 119.439 kb on + strand, within CCNA_00109at 119.439 kb on + strand, within CCNA_00109at 119.439 kb on + strand, within CCNA_00109at 119.439 kb on + strand, within CCNA_00109at 119.447 kb on - strand, within CCNA_00109at 119.447 kb on - strand, within CCNA_00109at 119.447 kb on - strand, within CCNA_00109at 119.447 kb on - strand, within CCNA_00109at 119.466 kb on - strand, within CCNA_00109at 119.472 kb on - strand, within CCNA_00109at 119.512 kb on - strand, within CCNA_00109at 119.536 kb on + strand, within CCNA_00109at 119.541 kb on + strand, within CCNA_00109at 119.544 kb on - strand, within CCNA_00109at 119.564 kb on + strand, within CCNA_00109at 119.582 kb on - strand, within CCNA_00109at 119.598 kb on + strand, within CCNA_00109at 119.604 kb on + strand, within CCNA_00109at 119.604 kb on + strand, within CCNA_00109at 119.604 kb on + strand, within CCNA_00109at 119.612 kb on - strand, within CCNA_00109at 119.612 kb on - strand, within CCNA_00109at 119.612 kb on - strand, within CCNA_00109at 119.612 kb on - strand, within CCNA_00109at 119.612 kb on - strand, within CCNA_00109at 119.612 kb on - strand, within CCNA_00109at 119.643 kb on + strand, within CCNA_00109at 119.644 kb on + strand, within CCNA_00109at 119.651 kb on - strand, within CCNA_00109at 119.720 kb on - strand, within CCNA_00109at 119.721 kb on - strand, within CCNA_00109at 119.721 kb on - strand, within CCNA_00109at 119.758 kb on + strand, within CCNA_00109at 119.775 kb on + strand, within CCNA_00109at 119.783 kb on - strand, within CCNA_00109at 119.783 kb on - strand, within CCNA_00109at 119.852 kb on + strand, within CCNA_00109at 119.929 kb on + strand, within CCNA_00109at 119.942 kb on - strand, within CCNA_00109at 120.004 kb on + strandat 120.004 kb on + strandat 120.012 kb on - strandat 120.098 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with nitrate 100 mM
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118,069 + +2.5
118,086 + -0.0
118,094 + +1.0
118,162 + -0.1
118,165 - +0.9
118,170 - -3.6
118,170 - -0.4
118,175 - +0.9
118,177 + +2.5
118,231 - +0.8
118,254 - +0.5
118,264 - +1.7
118,290 - CCNA_00107 0.15 +1.7
118,461 - +1.0
118,461 - +0.2
118,461 - +0.6
118,465 + -0.5
118,521 - -0.4
118,521 - -1.6
118,561 + CCNA_00108 0.14 -0.1
118,615 + CCNA_00108 0.22 -1.1
118,615 + CCNA_00108 0.22 -1.5
118,623 - CCNA_00108 0.23 -0.7
118,628 - CCNA_00108 0.24 -0.0
118,629 + CCNA_00108 0.24 -0.6
118,687 - CCNA_00108 0.32 +0.2
118,699 - -0.1
118,752 + CCNA_00108 0.42 -2.3
118,762 + CCNA_00108 0.44 -0.9
118,770 - CCNA_00108 0.45 +0.9
118,770 - CCNA_00108 0.45 +0.7
118,796 - CCNA_00108 0.49 +0.1
118,817 + CCNA_00108 0.52 -0.6
118,825 - CCNA_00108 0.53 +0.2
118,828 + CCNA_00108 0.53 -2.6
118,836 - CCNA_00108 0.54 -0.1
118,848 + CCNA_00108 0.56 -0.3
118,860 - CCNA_00108 0.58 +2.5
118,881 - CCNA_00108 0.61 +1.2
118,881 - CCNA_00108 0.61 +0.9
118,893 + CCNA_00108 0.63 -1.6
118,906 + CCNA_00108 0.65 +1.6
118,914 - CCNA_00108 0.66 +1.4
118,925 + CCNA_00108 0.68 +3.9
118,928 - CCNA_00108 0.68 +1.3
118,928 - CCNA_00108 0.68 +0.5
118,933 - CCNA_00108 0.69 +0.3
118,973 + CCNA_00108 0.75 -1.3
119,018 + CCNA_00108 0.81 -1.7
119,026 - CCNA_00108 0.82 -0.1
119,033 + CCNA_00108 0.83 +0.9
119,033 + CCNA_00108 0.83 -1.2
119,041 - CCNA_00108 0.85 +1.0
119,054 + CCNA_00108 0.87 -0.8
119,059 + CCNA_00108 0.87 -1.1
119,080 - +1.5
119,080 - +1.7
119,102 - +3.2
119,104 + -0.8
119,151 - +1.9
119,151 - +0.9
119,153 + -0.8
119,170 - +1.4
119,171 - +1.2
119,173 + +0.9
119,178 + -0.6
119,190 - +0.6
119,191 - +1.8
119,197 + +0.2
119,198 + -2.5
119,207 + +0.4
119,215 - +0.8
119,235 - +1.9
119,239 + +0.7
119,247 - +1.3
119,311 + CCNA_00109 0.17 +0.4
119,337 + CCNA_00109 0.20 -0.7
119,344 + CCNA_00109 0.20 +1.9
119,344 + CCNA_00109 0.20 -1.3
119,344 + CCNA_00109 0.20 -2.0
119,344 + CCNA_00109 0.20 +0.6
119,345 - CCNA_00109 0.21 +3.5
119,345 - CCNA_00109 0.21 +0.5
119,345 - CCNA_00109 0.21 +1.5
119,352 - CCNA_00109 0.21 +1.1
119,352 - CCNA_00109 0.21 +1.0
119,354 + CCNA_00109 0.22 -0.1
119,407 - CCNA_00109 0.27 +0.5
119,439 + CCNA_00109 0.31 -0.4
119,439 + CCNA_00109 0.31 +0.9
119,439 + CCNA_00109 0.31 +0.9
119,439 + CCNA_00109 0.31 -0.7
119,439 + CCNA_00109 0.31 -0.0
119,447 - CCNA_00109 0.32 +0.3
119,447 - CCNA_00109 0.32 +1.0
119,447 - CCNA_00109 0.32 +1.6
119,447 - CCNA_00109 0.32 +0.3
119,466 - CCNA_00109 0.34 +1.7
119,472 - CCNA_00109 0.35 -0.1
119,512 - CCNA_00109 0.39 +1.2
119,536 + CCNA_00109 0.42 -2.4
119,541 + CCNA_00109 0.42 +1.2
119,544 - CCNA_00109 0.43 -0.1
119,564 + CCNA_00109 0.45 -0.1
119,582 - CCNA_00109 0.47 +0.7
119,598 + CCNA_00109 0.49 -0.1
119,604 + CCNA_00109 0.49 -1.4
119,604 + CCNA_00109 0.49 +0.3
119,604 + CCNA_00109 0.49 +2.9
119,612 - CCNA_00109 0.50 +1.3
119,612 - CCNA_00109 0.50 +0.4
119,612 - CCNA_00109 0.50 +1.7
119,612 - CCNA_00109 0.50 +1.2
119,612 - CCNA_00109 0.50 +2.2
119,612 - CCNA_00109 0.50 +1.1
119,643 + CCNA_00109 0.54 +1.2
119,644 + CCNA_00109 0.54 -0.2
119,651 - CCNA_00109 0.55 +0.8
119,720 - CCNA_00109 0.62 +0.9
119,721 - CCNA_00109 0.62 +0.8
119,721 - CCNA_00109 0.62 +0.8
119,758 + CCNA_00109 0.66 +0.3
119,775 + CCNA_00109 0.68 +1.9
119,783 - CCNA_00109 0.69 +0.8
119,783 - CCNA_00109 0.69 +1.1
119,852 + CCNA_00109 0.77 +2.1
119,929 + CCNA_00109 0.85 +0.9
119,942 - CCNA_00109 0.87 -0.3
120,004 + -0.2
120,004 + +0.3
120,012 - +0.7
120,098 - +3.0

Or see this region's nucleotide sequence