Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS22335

Experiment: Maltitol 20mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA265_RS22330 and CA265_RS22335 are separated by 222 nucleotidesCA265_RS22335 and CA265_RS22340 are separated by 64 nucleotides CA265_RS22330: CA265_RS22330 - peptidase C39, at 5,482,243 to 5,484,354 _RS22330 CA265_RS22335: CA265_RS22335 - hypothetical protein, at 5,484,577 to 5,484,780 _RS22335 CA265_RS22340: CA265_RS22340 - hypothetical protein, at 5,484,845 to 5,485,843 _RS22340 Position (kb) 5484 5485Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 5483.732 kb on + strand, within CA265_RS22330at 5483.755 kb on - strand, within CA265_RS22330at 5483.796 kb on - strand, within CA265_RS22330at 5483.796 kb on - strand, within CA265_RS22330at 5483.815 kb on - strand, within CA265_RS22330at 5483.818 kb on + strand, within CA265_RS22330at 5483.825 kb on + strand, within CA265_RS22330at 5483.855 kb on - strand, within CA265_RS22330at 5483.867 kb on - strand, within CA265_RS22330at 5483.903 kb on + strand, within CA265_RS22330at 5483.925 kb on - strand, within CA265_RS22330at 5483.939 kb on + strand, within CA265_RS22330at 5483.940 kb on - strand, within CA265_RS22330at 5484.004 kb on - strand, within CA265_RS22330at 5484.056 kb on - strand, within CA265_RS22330at 5484.080 kb on + strand, within CA265_RS22330at 5484.081 kb on - strand, within CA265_RS22330at 5484.081 kb on - strand, within CA265_RS22330at 5484.081 kb on - strand, within CA265_RS22330at 5484.270 kb on + strandat 5484.285 kb on + strandat 5484.291 kb on - strandat 5484.291 kb on - strandat 5484.291 kb on - strandat 5484.311 kb on + strandat 5484.312 kb on - strandat 5484.394 kb on + strandat 5484.471 kb on + strandat 5484.487 kb on + strandat 5484.582 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Maltitol 20mM (C)
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5,483,732 + CA265_RS22330 0.71 +1.0
5,483,755 - CA265_RS22330 0.72 -0.8
5,483,796 - CA265_RS22330 0.74 +0.7
5,483,796 - CA265_RS22330 0.74 +2.9
5,483,815 - CA265_RS22330 0.74 -2.6
5,483,818 + CA265_RS22330 0.75 +2.6
5,483,825 + CA265_RS22330 0.75 +1.5
5,483,855 - CA265_RS22330 0.76 -0.7
5,483,867 - CA265_RS22330 0.77 +1.3
5,483,903 + CA265_RS22330 0.79 -1.2
5,483,925 - CA265_RS22330 0.80 +1.3
5,483,939 + CA265_RS22330 0.80 +1.6
5,483,940 - CA265_RS22330 0.80 +0.2
5,484,004 - CA265_RS22330 0.83 -0.6
5,484,056 - CA265_RS22330 0.86 -3.9
5,484,080 + CA265_RS22330 0.87 +0.3
5,484,081 - CA265_RS22330 0.87 +0.4
5,484,081 - CA265_RS22330 0.87 -0.4
5,484,081 - CA265_RS22330 0.87 -3.0
5,484,270 + -2.8
5,484,285 + -1.4
5,484,291 - +1.9
5,484,291 - +0.4
5,484,291 - +0.7
5,484,311 + -2.3
5,484,312 - -0.2
5,484,394 + -2.1
5,484,471 + +3.2
5,484,487 + +0.8
5,484,582 + -0.8

Or see this region's nucleotide sequence