Experiment: Maltitol 20mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS15465 and CA265_RS15470 are separated by 427 nucleotides CA265_RS15470 and CA265_RS15475 are separated by 597 nucleotides CA265_RS15475 and CA265_RS15480 are separated by 125 nucleotides
CA265_RS15465: CA265_RS15465 - acyltransferase, at 3,888,803 to 3,889,678
_RS15465
CA265_RS15470: CA265_RS15470 - band 7 protein, at 3,890,106 to 3,892,073
_RS15470
CA265_RS15475: CA265_RS15475 - hypothetical protein, at 3,892,671 to 3,892,892
_RS15475
CA265_RS15480: CA265_RS15480 - sterol desaturase, at 3,893,018 to 3,893,989
_RS15480
Position (kb)
3890
3891
3892
3893 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1
2
3
4 at 3889.709 kb on - strand at 3889.826 kb on + strand at 3889.854 kb on + strand at 3889.883 kb on - strand at 3889.883 kb on - strand at 3889.886 kb on - strand at 3889.965 kb on + strand at 3890.032 kb on + strand at 3890.032 kb on + strand at 3890.041 kb on + strand at 3890.041 kb on + strand at 3890.052 kb on - strand at 3890.107 kb on + strand at 3890.177 kb on + strand at 3890.196 kb on + strand at 3890.211 kb on + strand at 3890.304 kb on + strand, within CA265_RS15470 at 3890.368 kb on + strand, within CA265_RS15470 at 3890.368 kb on + strand, within CA265_RS15470 at 3890.369 kb on - strand, within CA265_RS15470 at 3890.369 kb on - strand, within CA265_RS15470 at 3890.387 kb on + strand, within CA265_RS15470 at 3890.391 kb on + strand, within CA265_RS15470 at 3890.566 kb on - strand, within CA265_RS15470 at 3890.628 kb on + strand, within CA265_RS15470 at 3890.826 kb on + strand, within CA265_RS15470 at 3890.833 kb on + strand, within CA265_RS15470 at 3890.865 kb on - strand, within CA265_RS15470 at 3890.938 kb on + strand, within CA265_RS15470 at 3891.004 kb on - strand, within CA265_RS15470 at 3891.081 kb on + strand, within CA265_RS15470 at 3891.081 kb on + strand, within CA265_RS15470 at 3891.082 kb on - strand, within CA265_RS15470 at 3891.150 kb on + strand, within CA265_RS15470 at 3891.175 kb on - strand, within CA265_RS15470 at 3891.240 kb on - strand, within CA265_RS15470 at 3891.240 kb on - strand, within CA265_RS15470 at 3891.261 kb on - strand, within CA265_RS15470 at 3891.285 kb on + strand, within CA265_RS15470 at 3891.449 kb on + strand, within CA265_RS15470 at 3891.540 kb on + strand, within CA265_RS15470 at 3891.554 kb on + strand, within CA265_RS15470 at 3891.555 kb on - strand, within CA265_RS15470 at 3891.611 kb on + strand, within CA265_RS15470 at 3891.634 kb on + strand, within CA265_RS15470 at 3891.635 kb on - strand, within CA265_RS15470 at 3891.705 kb on + strand, within CA265_RS15470 at 3891.791 kb on + strand, within CA265_RS15470 at 3891.808 kb on - strand, within CA265_RS15470 at 3891.812 kb on + strand, within CA265_RS15470 at 3891.838 kb on + strand, within CA265_RS15470 at 3891.839 kb on - strand, within CA265_RS15470 at 3891.978 kb on - strand at 3892.007 kb on - strand at 3892.105 kb on + strand at 3892.322 kb on - strand at 3892.342 kb on + strand at 3892.349 kb on + strand at 3892.412 kb on + strand at 3892.459 kb on - strand at 3892.529 kb on + strand at 3892.530 kb on - strand at 3892.604 kb on + strand at 3892.609 kb on + strand at 3892.610 kb on - strand at 3892.674 kb on + strand at 3892.756 kb on + strand, within CA265_RS15475 at 3892.756 kb on + strand, within CA265_RS15475 at 3892.756 kb on + strand, within CA265_RS15475 at 3892.771 kb on - strand, within CA265_RS15475 at 3892.783 kb on - strand, within CA265_RS15475 at 3892.791 kb on - strand, within CA265_RS15475 at 3892.808 kb on - strand, within CA265_RS15475 at 3892.838 kb on + strand, within CA265_RS15475 at 3892.880 kb on + strand at 3892.880 kb on + strand at 3892.880 kb on + strand at 3892.881 kb on - strand at 3892.935 kb on - strand at 3893.002 kb on + strand at 3893.011 kb on - strand at 3893.038 kb on + strand at 3893.068 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Maltitol 20mM (C) remove 3,889,709 - -1.2 3,889,826 + -2.1 3,889,854 + +0.5 3,889,883 - +0.9 3,889,883 - +1.7 3,889,886 - +0.9 3,889,965 + +0.8 3,890,032 + -3.0 3,890,032 + -0.1 3,890,041 + -1.7 3,890,041 + -0.1 3,890,052 - -0.3 3,890,107 + +2.3 3,890,177 + -0.1 3,890,196 + -0.3 3,890,211 + -2.3 3,890,304 + CA265_RS15470 0.10 -3.3 3,890,368 + CA265_RS15470 0.13 +0.6 3,890,368 + CA265_RS15470 0.13 -2.3 3,890,369 - CA265_RS15470 0.13 +1.6 3,890,369 - CA265_RS15470 0.13 +2.0 3,890,387 + CA265_RS15470 0.14 -3.1 3,890,391 + CA265_RS15470 0.14 -1.6 3,890,566 - CA265_RS15470 0.23 +0.8 3,890,628 + CA265_RS15470 0.27 -4.8 3,890,826 + CA265_RS15470 0.37 -1.3 3,890,833 + CA265_RS15470 0.37 -3.0 3,890,865 - CA265_RS15470 0.39 +0.6 3,890,938 + CA265_RS15470 0.42 +3.7 3,891,004 - CA265_RS15470 0.46 -1.3 3,891,081 + CA265_RS15470 0.50 -0.4 3,891,081 + CA265_RS15470 0.50 -0.6 3,891,082 - CA265_RS15470 0.50 +0.4 3,891,150 + CA265_RS15470 0.53 +0.1 3,891,175 - CA265_RS15470 0.54 -0.1 3,891,240 - CA265_RS15470 0.58 +1.7 3,891,240 - CA265_RS15470 0.58 +1.3 3,891,261 - CA265_RS15470 0.59 +0.4 3,891,285 + CA265_RS15470 0.60 -1.1 3,891,449 + CA265_RS15470 0.68 -0.2 3,891,540 + CA265_RS15470 0.73 -0.4 3,891,554 + CA265_RS15470 0.74 +2.0 3,891,555 - CA265_RS15470 0.74 +0.7 3,891,611 + CA265_RS15470 0.76 +0.1 3,891,634 + CA265_RS15470 0.78 +0.5 3,891,635 - CA265_RS15470 0.78 -0.8 3,891,705 + CA265_RS15470 0.81 -1.7 3,891,791 + CA265_RS15470 0.86 +2.2 3,891,808 - CA265_RS15470 0.86 +0.7 3,891,812 + CA265_RS15470 0.87 -4.3 3,891,838 + CA265_RS15470 0.88 +4.0 3,891,839 - CA265_RS15470 0.88 +0.4 3,891,978 - -3.3 3,892,007 - -2.3 3,892,105 + -0.3 3,892,322 - -2.4 3,892,342 + +0.1 3,892,349 + -1.0 3,892,412 + -1.0 3,892,459 - -4.7 3,892,529 + -0.6 3,892,530 - +0.7 3,892,604 + +0.2 3,892,609 + -0.1 3,892,610 - +1.2 3,892,674 + +0.1 3,892,756 + CA265_RS15475 0.38 -2.5 3,892,756 + CA265_RS15475 0.38 -0.1 3,892,756 + CA265_RS15475 0.38 +0.3 3,892,771 - CA265_RS15475 0.45 -0.9 3,892,783 - CA265_RS15475 0.50 -1.6 3,892,791 - CA265_RS15475 0.54 +0.1 3,892,808 - CA265_RS15475 0.62 -3.6 3,892,838 + CA265_RS15475 0.75 +2.3 3,892,880 + +1.0 3,892,880 + +2.0 3,892,880 + +0.7 3,892,881 - +0.0 3,892,935 - -2.0 3,893,002 + +0.4 3,893,011 - +1.6 3,893,038 + -0.9 3,893,068 - -3.5
Or see this region's nucleotide sequence