Experiment: Maltitol 20mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS15190 and CA265_RS15195 are separated by 33 nucleotides CA265_RS15195 and CA265_RS15200 are separated by 5 nucleotides CA265_RS15200 and CA265_RS15205 are separated by 130 nucleotides
CA265_RS15190: CA265_RS15190 - RNA polymerase sigma factor, at 3,823,941 to 3,824,501
_RS15190
CA265_RS15195: CA265_RS15195 - hypothetical protein, at 3,824,535 to 3,825,191
_RS15195
CA265_RS15200: CA265_RS15200 - hypothetical protein, at 3,825,197 to 3,825,637
_RS15200
CA265_RS15205: CA265_RS15205 - aspartate aminotransferase family protein, at 3,825,768 to 3,826,904
_RS15205
Position (kb)
3825
3826 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3 at 3824.246 kb on - strand, within CA265_RS15190 at 3824.283 kb on + strand, within CA265_RS15190 at 3824.309 kb on + strand, within CA265_RS15190 at 3824.310 kb on - strand, within CA265_RS15190 at 3824.381 kb on + strand, within CA265_RS15190 at 3824.389 kb on - strand, within CA265_RS15190 at 3824.496 kb on + strand at 3824.515 kb on - strand at 3824.525 kb on + strand at 3824.525 kb on + strand at 3824.526 kb on - strand at 3824.527 kb on + strand at 3824.528 kb on - strand at 3824.688 kb on - strand, within CA265_RS15195 at 3824.703 kb on - strand, within CA265_RS15195 at 3824.725 kb on - strand, within CA265_RS15195 at 3824.777 kb on - strand, within CA265_RS15195 at 3824.879 kb on + strand, within CA265_RS15195 at 3824.913 kb on - strand, within CA265_RS15195 at 3824.913 kb on - strand, within CA265_RS15195 at 3824.913 kb on - strand, within CA265_RS15195 at 3824.916 kb on + strand, within CA265_RS15195 at 3825.031 kb on + strand, within CA265_RS15195 at 3825.032 kb on - strand, within CA265_RS15195 at 3825.060 kb on - strand, within CA265_RS15195 at 3825.071 kb on - strand, within CA265_RS15195 at 3825.084 kb on - strand, within CA265_RS15195 at 3825.100 kb on + strand, within CA265_RS15195 at 3825.101 kb on - strand, within CA265_RS15195 at 3825.108 kb on - strand, within CA265_RS15195 at 3825.139 kb on - strand at 3825.169 kb on + strand at 3825.169 kb on + strand at 3825.222 kb on + strand at 3825.318 kb on + strand, within CA265_RS15200 at 3825.319 kb on - strand, within CA265_RS15200 at 3825.319 kb on - strand, within CA265_RS15200 at 3825.353 kb on + strand, within CA265_RS15200 at 3825.361 kb on + strand, within CA265_RS15200 at 3825.604 kb on - strand at 3825.659 kb on + strand at 3825.660 kb on - strand at 3825.660 kb on - strand at 3825.676 kb on - strand at 3825.768 kb on - strand at 3825.781 kb on + strand at 3825.781 kb on + strand at 3825.798 kb on + strand at 3825.805 kb on - strand at 3825.857 kb on + strand at 3825.857 kb on + strand at 3825.915 kb on + strand, within CA265_RS15205 at 3825.917 kb on + strand, within CA265_RS15205 at 3825.918 kb on - strand, within CA265_RS15205 at 3825.942 kb on + strand, within CA265_RS15205 at 3825.943 kb on - strand, within CA265_RS15205 at 3826.092 kb on - strand, within CA265_RS15205 at 3826.110 kb on + strand, within CA265_RS15205 at 3826.118 kb on + strand, within CA265_RS15205 at 3826.122 kb on - strand, within CA265_RS15205 at 3826.193 kb on - strand, within CA265_RS15205 at 3826.234 kb on + strand, within CA265_RS15205 at 3826.271 kb on - strand, within CA265_RS15205 at 3826.289 kb on - strand, within CA265_RS15205 at 3826.308 kb on + strand, within CA265_RS15205 at 3826.309 kb on - strand, within CA265_RS15205 at 3826.309 kb on - strand, within CA265_RS15205 at 3826.311 kb on - strand, within CA265_RS15205 at 3826.426 kb on + strand, within CA265_RS15205 at 3826.521 kb on - strand, within CA265_RS15205 at 3826.591 kb on + strand, within CA265_RS15205 at 3826.591 kb on + strand, within CA265_RS15205 at 3826.592 kb on - strand, within CA265_RS15205
Per-strain Table
Position Strand Gene LocusTag Fraction Maltitol 20mM (C) remove 3,824,246 - CA265_RS15190 0.54 -0.3 3,824,283 + CA265_RS15190 0.61 -1.7 3,824,309 + CA265_RS15190 0.66 +0.7 3,824,310 - CA265_RS15190 0.66 -0.4 3,824,381 + CA265_RS15190 0.78 +1.6 3,824,389 - CA265_RS15190 0.80 -0.1 3,824,496 + +0.3 3,824,515 - +1.3 3,824,525 + -2.2 3,824,525 + +0.0 3,824,526 - +1.9 3,824,527 + +3.1 3,824,528 - -1.4 3,824,688 - CA265_RS15195 0.23 +1.4 3,824,703 - CA265_RS15195 0.26 -1.6 3,824,725 - CA265_RS15195 0.29 +0.4 3,824,777 - CA265_RS15195 0.37 +0.7 3,824,879 + CA265_RS15195 0.52 +1.0 3,824,913 - CA265_RS15195 0.58 +2.0 3,824,913 - CA265_RS15195 0.58 +2.3 3,824,913 - CA265_RS15195 0.58 -0.6 3,824,916 + CA265_RS15195 0.58 +0.7 3,825,031 + CA265_RS15195 0.75 +2.7 3,825,032 - CA265_RS15195 0.76 +1.0 3,825,060 - CA265_RS15195 0.80 +0.6 3,825,071 - CA265_RS15195 0.82 -1.9 3,825,084 - CA265_RS15195 0.84 -0.3 3,825,100 + CA265_RS15195 0.86 +0.6 3,825,101 - CA265_RS15195 0.86 +2.6 3,825,108 - CA265_RS15195 0.87 -0.6 3,825,139 - +1.4 3,825,169 + +0.6 3,825,169 + +0.9 3,825,222 + +1.2 3,825,318 + CA265_RS15200 0.27 +1.2 3,825,319 - CA265_RS15200 0.28 +1.0 3,825,319 - CA265_RS15200 0.28 +1.8 3,825,353 + CA265_RS15200 0.35 +1.9 3,825,361 + CA265_RS15200 0.37 +1.4 3,825,604 - +1.5 3,825,659 + -0.4 3,825,660 - -0.1 3,825,660 - -2.1 3,825,676 - +0.7 3,825,768 - -3.0 3,825,781 + -0.6 3,825,781 + -1.2 3,825,798 + -1.6 3,825,805 - -1.2 3,825,857 + -1.4 3,825,857 + -1.0 3,825,915 + CA265_RS15205 0.13 -1.3 3,825,917 + CA265_RS15205 0.13 +0.5 3,825,918 - CA265_RS15205 0.13 -3.0 3,825,942 + CA265_RS15205 0.15 -3.6 3,825,943 - CA265_RS15205 0.15 -1.0 3,826,092 - CA265_RS15205 0.28 -1.7 3,826,110 + CA265_RS15205 0.30 -2.4 3,826,118 + CA265_RS15205 0.31 -1.2 3,826,122 - CA265_RS15205 0.31 -4.0 3,826,193 - CA265_RS15205 0.37 -2.2 3,826,234 + CA265_RS15205 0.41 -0.3 3,826,271 - CA265_RS15205 0.44 -1.9 3,826,289 - CA265_RS15205 0.46 -2.3 3,826,308 + CA265_RS15205 0.47 -1.8 3,826,309 - CA265_RS15205 0.48 -3.9 3,826,309 - CA265_RS15205 0.48 -3.0 3,826,311 - CA265_RS15205 0.48 -0.7 3,826,426 + CA265_RS15205 0.58 -1.5 3,826,521 - CA265_RS15205 0.66 +0.7 3,826,591 + CA265_RS15205 0.72 -2.3 3,826,591 + CA265_RS15205 0.72 -3.3 3,826,592 - CA265_RS15205 0.72 -0.1
Or see this region's nucleotide sequence