Experiment: Maltitol 20mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS09590 and CA265_RS09595 are separated by 98 nucleotides CA265_RS09595 and CA265_RS09600 overlap by 19 nucleotides CA265_RS09600 and CA265_RS09605 are separated by 107 nucleotides
CA265_RS09590: CA265_RS09590 - LD-carboxypeptidase, at 2,373,538 to 2,374,560
_RS09590
CA265_RS09595: CA265_RS09595 - hypothetical protein, at 2,374,659 to 2,374,868
_RS09595
CA265_RS09600: CA265_RS09600 - Txe/YoeB family addiction module toxin, at 2,374,850 to 2,375,131
_RS09600
CA265_RS09605: CA265_RS09605 - nicotinamide mononucleotide adenylyltransferase, at 2,375,239 to 2,376,555
_RS09605
Position (kb)
2373
2374
2375 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 2372.573 kb on + strand at 2372.573 kb on + strand at 2372.627 kb on - strand at 2372.628 kb on + strand at 2372.628 kb on + strand at 2372.628 kb on + strand at 2372.628 kb on + strand at 2372.628 kb on + strand at 2372.628 kb on + strand at 2372.629 kb on - strand at 2372.629 kb on - strand at 2372.706 kb on + strand at 2372.706 kb on + strand at 2372.847 kb on - strand at 2372.853 kb on + strand at 2372.900 kb on + strand at 2372.901 kb on - strand at 2372.902 kb on + strand at 2372.902 kb on + strand at 2372.987 kb on - strand at 2372.993 kb on + strand at 2373.011 kb on - strand at 2373.041 kb on - strand at 2373.085 kb on - strand at 2373.092 kb on + strand at 2373.092 kb on + strand at 2373.093 kb on - strand at 2373.093 kb on - strand at 2373.107 kb on - strand at 2373.249 kb on - strand at 2373.293 kb on - strand at 2373.304 kb on - strand at 2373.313 kb on + strand at 2373.345 kb on - strand at 2373.398 kb on + strand at 2373.399 kb on - strand at 2373.402 kb on + strand at 2373.415 kb on - strand at 2373.458 kb on + strand at 2373.466 kb on + strand at 2373.466 kb on + strand at 2373.466 kb on + strand at 2373.467 kb on - strand at 2373.502 kb on + strand at 2373.530 kb on + strand at 2373.535 kb on + strand at 2373.536 kb on - strand at 2373.673 kb on - strand, within CA265_RS09590 at 2373.682 kb on - strand, within CA265_RS09590 at 2373.754 kb on - strand, within CA265_RS09590 at 2373.858 kb on + strand, within CA265_RS09590 at 2373.867 kb on + strand, within CA265_RS09590 at 2373.867 kb on + strand, within CA265_RS09590 at 2373.867 kb on + strand, within CA265_RS09590 at 2373.909 kb on + strand, within CA265_RS09590 at 2373.914 kb on + strand, within CA265_RS09590 at 2374.015 kb on - strand, within CA265_RS09590 at 2374.036 kb on - strand, within CA265_RS09590 at 2374.088 kb on + strand, within CA265_RS09590 at 2374.088 kb on + strand, within CA265_RS09590 at 2374.089 kb on - strand, within CA265_RS09590 at 2374.089 kb on - strand, within CA265_RS09590 at 2374.089 kb on - strand, within CA265_RS09590 at 2374.093 kb on - strand, within CA265_RS09590 at 2374.128 kb on + strand, within CA265_RS09590 at 2374.140 kb on + strand, within CA265_RS09590 at 2374.144 kb on - strand, within CA265_RS09590 at 2374.157 kb on + strand, within CA265_RS09590 at 2374.178 kb on + strand, within CA265_RS09590 at 2374.178 kb on + strand, within CA265_RS09590 at 2374.201 kb on - strand, within CA265_RS09590 at 2374.245 kb on + strand, within CA265_RS09590 at 2374.246 kb on - strand, within CA265_RS09590 at 2374.246 kb on - strand, within CA265_RS09590 at 2374.283 kb on - strand, within CA265_RS09590 at 2374.405 kb on - strand, within CA265_RS09590 at 2374.409 kb on - strand, within CA265_RS09590 at 2374.413 kb on + strand, within CA265_RS09590 at 2374.413 kb on + strand, within CA265_RS09590 at 2374.438 kb on + strand, within CA265_RS09590 at 2374.444 kb on + strand, within CA265_RS09590 at 2374.509 kb on - strand at 2374.516 kb on - strand at 2374.526 kb on + strand at 2374.554 kb on + strand at 2374.555 kb on - strand at 2374.564 kb on - strand at 2374.565 kb on + strand at 2374.867 kb on - strand at 2374.902 kb on + strand, within CA265_RS09600 at 2374.902 kb on + strand, within CA265_RS09600 at 2374.907 kb on + strand, within CA265_RS09600 at 2374.910 kb on - strand, within CA265_RS09600 at 2374.910 kb on - strand, within CA265_RS09600 at 2374.921 kb on + strand, within CA265_RS09600 at 2374.922 kb on - strand, within CA265_RS09600 at 2374.963 kb on - strand, within CA265_RS09600 at 2375.064 kb on - strand, within CA265_RS09600 at 2375.065 kb on - strand, within CA265_RS09600 at 2375.071 kb on - strand, within CA265_RS09600 at 2375.125 kb on + strand at 2375.166 kb on - strand at 2375.215 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Maltitol 20mM (C) remove 2,372,573 + -2.8 2,372,573 + -3.9 2,372,627 - -0.2 2,372,628 + -4.1 2,372,628 + -0.4 2,372,628 + -1.5 2,372,628 + +0.2 2,372,628 + -3.7 2,372,628 + -1.3 2,372,629 - -0.7 2,372,629 - +1.0 2,372,706 + -0.7 2,372,706 + -4.3 2,372,847 - +0.9 2,372,853 + -0.2 2,372,900 + -1.7 2,372,901 - +0.1 2,372,902 + -4.6 2,372,902 + +0.9 2,372,987 - -3.1 2,372,993 + -0.4 2,373,011 - -0.0 2,373,041 - -0.8 2,373,085 - -3.8 2,373,092 + -1.8 2,373,092 + +0.5 2,373,093 - +0.7 2,373,093 - +0.3 2,373,107 - -0.9 2,373,249 - +1.0 2,373,293 - +0.5 2,373,304 - +0.3 2,373,313 + +0.5 2,373,345 - -4.1 2,373,398 + +1.2 2,373,399 - -0.4 2,373,402 + +1.6 2,373,415 - +0.9 2,373,458 + +0.1 2,373,466 + -0.1 2,373,466 + -0.8 2,373,466 + +1.1 2,373,467 - +1.2 2,373,502 + +0.7 2,373,530 + -1.4 2,373,535 + +0.3 2,373,536 - -1.3 2,373,673 - CA265_RS09590 0.13 +1.2 2,373,682 - CA265_RS09590 0.14 -0.7 2,373,754 - CA265_RS09590 0.21 +0.4 2,373,858 + CA265_RS09590 0.31 -0.3 2,373,867 + CA265_RS09590 0.32 -2.6 2,373,867 + CA265_RS09590 0.32 +0.6 2,373,867 + CA265_RS09590 0.32 +0.3 2,373,909 + CA265_RS09590 0.36 +0.6 2,373,914 + CA265_RS09590 0.37 -0.6 2,374,015 - CA265_RS09590 0.47 +1.2 2,374,036 - CA265_RS09590 0.49 -3.0 2,374,088 + CA265_RS09590 0.54 +0.3 2,374,088 + CA265_RS09590 0.54 -2.2 2,374,089 - CA265_RS09590 0.54 -1.0 2,374,089 - CA265_RS09590 0.54 -0.7 2,374,089 - CA265_RS09590 0.54 +1.8 2,374,093 - CA265_RS09590 0.54 +0.7 2,374,128 + CA265_RS09590 0.58 -1.7 2,374,140 + CA265_RS09590 0.59 +0.7 2,374,144 - CA265_RS09590 0.59 -0.9 2,374,157 + CA265_RS09590 0.61 -1.8 2,374,178 + CA265_RS09590 0.63 -2.1 2,374,178 + CA265_RS09590 0.63 +0.4 2,374,201 - CA265_RS09590 0.65 -0.2 2,374,245 + CA265_RS09590 0.69 -1.7 2,374,246 - CA265_RS09590 0.69 -2.8 2,374,246 - CA265_RS09590 0.69 +0.7 2,374,283 - CA265_RS09590 0.73 -0.7 2,374,405 - CA265_RS09590 0.85 -0.1 2,374,409 - CA265_RS09590 0.85 +0.8 2,374,413 + CA265_RS09590 0.86 +1.0 2,374,413 + CA265_RS09590 0.86 -1.6 2,374,438 + CA265_RS09590 0.88 -3.1 2,374,444 + CA265_RS09590 0.89 -2.5 2,374,509 - +0.6 2,374,516 - -1.4 2,374,526 + +0.3 2,374,554 + -2.3 2,374,555 - -3.5 2,374,564 - +0.9 2,374,565 + -0.9 2,374,867 - +0.1 2,374,902 + CA265_RS09600 0.18 -3.7 2,374,902 + CA265_RS09600 0.18 +0.9 2,374,907 + CA265_RS09600 0.20 +0.3 2,374,910 - CA265_RS09600 0.21 +0.3 2,374,910 - CA265_RS09600 0.21 -0.2 2,374,921 + CA265_RS09600 0.25 +1.8 2,374,922 - CA265_RS09600 0.26 +1.0 2,374,963 - CA265_RS09600 0.40 +1.9 2,375,064 - CA265_RS09600 0.76 -0.1 2,375,065 - CA265_RS09600 0.76 +0.4 2,375,071 - CA265_RS09600 0.78 -0.2 2,375,125 + -0.1 2,375,166 - -0.3 2,375,215 + +1.8
Or see this region's nucleotide sequence