Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS09590

Experiment: Maltitol 20mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA265_RS09590 and CA265_RS09595 are separated by 98 nucleotidesCA265_RS09595 and CA265_RS09600 overlap by 19 nucleotidesCA265_RS09600 and CA265_RS09605 are separated by 107 nucleotides CA265_RS09590: CA265_RS09590 - LD-carboxypeptidase, at 2,373,538 to 2,374,560 _RS09590 CA265_RS09595: CA265_RS09595 - hypothetical protein, at 2,374,659 to 2,374,868 _RS09595 CA265_RS09600: CA265_RS09600 - Txe/YoeB family addiction module toxin, at 2,374,850 to 2,375,131 _RS09600 CA265_RS09605: CA265_RS09605 - nicotinamide mononucleotide adenylyltransferase, at 2,375,239 to 2,376,555 _RS09605 Position (kb) 2373 2374 2375Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 2372.573 kb on + strandat 2372.573 kb on + strandat 2372.627 kb on - strandat 2372.628 kb on + strandat 2372.628 kb on + strandat 2372.628 kb on + strandat 2372.628 kb on + strandat 2372.628 kb on + strandat 2372.628 kb on + strandat 2372.629 kb on - strandat 2372.629 kb on - strandat 2372.706 kb on + strandat 2372.706 kb on + strandat 2372.847 kb on - strandat 2372.853 kb on + strandat 2372.900 kb on + strandat 2372.901 kb on - strandat 2372.902 kb on + strandat 2372.902 kb on + strandat 2372.987 kb on - strandat 2372.993 kb on + strandat 2373.011 kb on - strandat 2373.041 kb on - strandat 2373.085 kb on - strandat 2373.092 kb on + strandat 2373.092 kb on + strandat 2373.093 kb on - strandat 2373.093 kb on - strandat 2373.107 kb on - strandat 2373.249 kb on - strandat 2373.293 kb on - strandat 2373.304 kb on - strandat 2373.313 kb on + strandat 2373.345 kb on - strandat 2373.398 kb on + strandat 2373.399 kb on - strandat 2373.402 kb on + strandat 2373.415 kb on - strandat 2373.458 kb on + strandat 2373.466 kb on + strandat 2373.466 kb on + strandat 2373.466 kb on + strandat 2373.467 kb on - strandat 2373.502 kb on + strandat 2373.530 kb on + strandat 2373.535 kb on + strandat 2373.536 kb on - strandat 2373.673 kb on - strand, within CA265_RS09590at 2373.682 kb on - strand, within CA265_RS09590at 2373.754 kb on - strand, within CA265_RS09590at 2373.858 kb on + strand, within CA265_RS09590at 2373.867 kb on + strand, within CA265_RS09590at 2373.867 kb on + strand, within CA265_RS09590at 2373.867 kb on + strand, within CA265_RS09590at 2373.909 kb on + strand, within CA265_RS09590at 2373.914 kb on + strand, within CA265_RS09590at 2374.015 kb on - strand, within CA265_RS09590at 2374.036 kb on - strand, within CA265_RS09590at 2374.088 kb on + strand, within CA265_RS09590at 2374.088 kb on + strand, within CA265_RS09590at 2374.089 kb on - strand, within CA265_RS09590at 2374.089 kb on - strand, within CA265_RS09590at 2374.089 kb on - strand, within CA265_RS09590at 2374.093 kb on - strand, within CA265_RS09590at 2374.128 kb on + strand, within CA265_RS09590at 2374.140 kb on + strand, within CA265_RS09590at 2374.144 kb on - strand, within CA265_RS09590at 2374.157 kb on + strand, within CA265_RS09590at 2374.178 kb on + strand, within CA265_RS09590at 2374.178 kb on + strand, within CA265_RS09590at 2374.201 kb on - strand, within CA265_RS09590at 2374.245 kb on + strand, within CA265_RS09590at 2374.246 kb on - strand, within CA265_RS09590at 2374.246 kb on - strand, within CA265_RS09590at 2374.283 kb on - strand, within CA265_RS09590at 2374.405 kb on - strand, within CA265_RS09590at 2374.409 kb on - strand, within CA265_RS09590at 2374.413 kb on + strand, within CA265_RS09590at 2374.413 kb on + strand, within CA265_RS09590at 2374.438 kb on + strand, within CA265_RS09590at 2374.444 kb on + strand, within CA265_RS09590at 2374.509 kb on - strandat 2374.516 kb on - strandat 2374.526 kb on + strandat 2374.554 kb on + strandat 2374.555 kb on - strandat 2374.564 kb on - strandat 2374.565 kb on + strandat 2374.867 kb on - strandat 2374.902 kb on + strand, within CA265_RS09600at 2374.902 kb on + strand, within CA265_RS09600at 2374.907 kb on + strand, within CA265_RS09600at 2374.910 kb on - strand, within CA265_RS09600at 2374.910 kb on - strand, within CA265_RS09600at 2374.921 kb on + strand, within CA265_RS09600at 2374.922 kb on - strand, within CA265_RS09600at 2374.963 kb on - strand, within CA265_RS09600at 2375.064 kb on - strand, within CA265_RS09600at 2375.065 kb on - strand, within CA265_RS09600at 2375.071 kb on - strand, within CA265_RS09600at 2375.125 kb on + strandat 2375.166 kb on - strandat 2375.215 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Maltitol 20mM (C)
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2,372,573 + -2.8
2,372,573 + -3.9
2,372,627 - -0.2
2,372,628 + -4.1
2,372,628 + -0.4
2,372,628 + -1.5
2,372,628 + +0.2
2,372,628 + -3.7
2,372,628 + -1.3
2,372,629 - -0.7
2,372,629 - +1.0
2,372,706 + -0.7
2,372,706 + -4.3
2,372,847 - +0.9
2,372,853 + -0.2
2,372,900 + -1.7
2,372,901 - +0.1
2,372,902 + -4.6
2,372,902 + +0.9
2,372,987 - -3.1
2,372,993 + -0.4
2,373,011 - -0.0
2,373,041 - -0.8
2,373,085 - -3.8
2,373,092 + -1.8
2,373,092 + +0.5
2,373,093 - +0.7
2,373,093 - +0.3
2,373,107 - -0.9
2,373,249 - +1.0
2,373,293 - +0.5
2,373,304 - +0.3
2,373,313 + +0.5
2,373,345 - -4.1
2,373,398 + +1.2
2,373,399 - -0.4
2,373,402 + +1.6
2,373,415 - +0.9
2,373,458 + +0.1
2,373,466 + -0.1
2,373,466 + -0.8
2,373,466 + +1.1
2,373,467 - +1.2
2,373,502 + +0.7
2,373,530 + -1.4
2,373,535 + +0.3
2,373,536 - -1.3
2,373,673 - CA265_RS09590 0.13 +1.2
2,373,682 - CA265_RS09590 0.14 -0.7
2,373,754 - CA265_RS09590 0.21 +0.4
2,373,858 + CA265_RS09590 0.31 -0.3
2,373,867 + CA265_RS09590 0.32 -2.6
2,373,867 + CA265_RS09590 0.32 +0.6
2,373,867 + CA265_RS09590 0.32 +0.3
2,373,909 + CA265_RS09590 0.36 +0.6
2,373,914 + CA265_RS09590 0.37 -0.6
2,374,015 - CA265_RS09590 0.47 +1.2
2,374,036 - CA265_RS09590 0.49 -3.0
2,374,088 + CA265_RS09590 0.54 +0.3
2,374,088 + CA265_RS09590 0.54 -2.2
2,374,089 - CA265_RS09590 0.54 -1.0
2,374,089 - CA265_RS09590 0.54 -0.7
2,374,089 - CA265_RS09590 0.54 +1.8
2,374,093 - CA265_RS09590 0.54 +0.7
2,374,128 + CA265_RS09590 0.58 -1.7
2,374,140 + CA265_RS09590 0.59 +0.7
2,374,144 - CA265_RS09590 0.59 -0.9
2,374,157 + CA265_RS09590 0.61 -1.8
2,374,178 + CA265_RS09590 0.63 -2.1
2,374,178 + CA265_RS09590 0.63 +0.4
2,374,201 - CA265_RS09590 0.65 -0.2
2,374,245 + CA265_RS09590 0.69 -1.7
2,374,246 - CA265_RS09590 0.69 -2.8
2,374,246 - CA265_RS09590 0.69 +0.7
2,374,283 - CA265_RS09590 0.73 -0.7
2,374,405 - CA265_RS09590 0.85 -0.1
2,374,409 - CA265_RS09590 0.85 +0.8
2,374,413 + CA265_RS09590 0.86 +1.0
2,374,413 + CA265_RS09590 0.86 -1.6
2,374,438 + CA265_RS09590 0.88 -3.1
2,374,444 + CA265_RS09590 0.89 -2.5
2,374,509 - +0.6
2,374,516 - -1.4
2,374,526 + +0.3
2,374,554 + -2.3
2,374,555 - -3.5
2,374,564 - +0.9
2,374,565 + -0.9
2,374,867 - +0.1
2,374,902 + CA265_RS09600 0.18 -3.7
2,374,902 + CA265_RS09600 0.18 +0.9
2,374,907 + CA265_RS09600 0.20 +0.3
2,374,910 - CA265_RS09600 0.21 +0.3
2,374,910 - CA265_RS09600 0.21 -0.2
2,374,921 + CA265_RS09600 0.25 +1.8
2,374,922 - CA265_RS09600 0.26 +1.0
2,374,963 - CA265_RS09600 0.40 +1.9
2,375,064 - CA265_RS09600 0.76 -0.1
2,375,065 - CA265_RS09600 0.76 +0.4
2,375,071 - CA265_RS09600 0.78 -0.2
2,375,125 + -0.1
2,375,166 - -0.3
2,375,215 + +1.8

Or see this region's nucleotide sequence