Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS05090

Experiment: Maltitol 20mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA265_RS05085 and CA265_RS05090 are separated by 709 nucleotidesCA265_RS05090 and CA265_RS05095 are separated by 249 nucleotidesCA265_RS05095 and CA265_RS05100 are separated by 451 nucleotides CA265_RS05085: CA265_RS05085 - hypothetical protein, at 1,207,676 to 1,213,990 _RS05085 CA265_RS05090: CA265_RS05090 - hypothetical protein, at 1,214,700 to 1,214,954 _RS05090 CA265_RS05095: CA265_RS05095 - hypothetical protein, at 1,215,204 to 1,215,413 _RS05095 CA265_RS05100: CA265_RS05100 - threonylcarbamoyl-AMP synthase, at 1,215,865 to 1,216,485 _RS05100 Position (kb) 1214 1215Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 1213.712 kb on + strandat 1213.750 kb on - strandat 1213.750 kb on - strandat 1213.780 kb on - strandat 1213.857 kb on - strandat 1213.857 kb on - strandat 1213.993 kb on - strandat 1213.995 kb on + strandat 1213.995 kb on + strandat 1214.086 kb on + strandat 1214.116 kb on + strandat 1214.248 kb on + strandat 1214.260 kb on + strandat 1214.265 kb on + strandat 1214.324 kb on - strandat 1214.418 kb on + strandat 1214.419 kb on - strandat 1214.476 kb on + strandat 1214.571 kb on - strandat 1214.659 kb on - strandat 1214.661 kb on + strandat 1214.694 kb on - strandat 1214.816 kb on + strand, within CA265_RS05090at 1214.817 kb on - strand, within CA265_RS05090at 1214.828 kb on - strand, within CA265_RS05090at 1214.923 kb on + strand, within CA265_RS05090at 1214.958 kb on - strandat 1214.958 kb on - strandat 1215.090 kb on - strandat 1215.117 kb on + strandat 1215.118 kb on - strandat 1215.129 kb on + strandat 1215.160 kb on + strandat 1215.166 kb on - strandat 1215.559 kb on - strandat 1215.600 kb on + strandat 1215.612 kb on + strandat 1215.613 kb on - strandat 1215.613 kb on - strandat 1215.613 kb on - strandat 1215.654 kb on + strandat 1215.655 kb on - strandat 1215.658 kb on - strandat 1215.699 kb on + strandat 1215.758 kb on + strandat 1215.759 kb on - strandat 1215.821 kb on - strandat 1215.853 kb on + strandat 1215.866 kb on + strandat 1215.882 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Maltitol 20mM (C)
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1,213,712 + -2.6
1,213,750 - +0.8
1,213,750 - -1.3
1,213,780 - -2.1
1,213,857 - -2.5
1,213,857 - -4.3
1,213,993 - -0.1
1,213,995 + +2.3
1,213,995 + -2.6
1,214,086 + +1.0
1,214,116 + -0.1
1,214,248 + +1.1
1,214,260 + +1.5
1,214,265 + -0.0
1,214,324 - +0.3
1,214,418 + +2.5
1,214,419 - +2.0
1,214,476 + -3.2
1,214,571 - -0.4
1,214,659 - +1.4
1,214,661 + -2.6
1,214,694 - +0.0
1,214,816 + CA265_RS05090 0.45 -2.9
1,214,817 - CA265_RS05090 0.46 -0.3
1,214,828 - CA265_RS05090 0.50 -1.2
1,214,923 + CA265_RS05090 0.87 -0.3
1,214,958 - +1.4
1,214,958 - -0.1
1,215,090 - -1.3
1,215,117 + +1.3
1,215,118 - +0.6
1,215,129 + +0.6
1,215,160 + +1.3
1,215,166 - -2.9
1,215,559 - +0.4
1,215,600 + -0.2
1,215,612 + -0.7
1,215,613 - +0.9
1,215,613 - +0.2
1,215,613 - -1.3
1,215,654 + -1.4
1,215,655 - +1.1
1,215,658 - -0.3
1,215,699 + -1.2
1,215,758 + +0.8
1,215,759 - +1.3
1,215,821 - +1.4
1,215,853 + -1.6
1,215,866 + -1.1
1,215,882 + -0.6

Or see this region's nucleotide sequence