Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS03645

Experiment: Maltitol 20mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA265_RS03640 and CA265_RS03645 are separated by 275 nucleotidesCA265_RS03645 and CA265_RS03650 are separated by 70 nucleotidesCA265_RS03650 and CA265_RS03655 are separated by 68 nucleotides CA265_RS03640: CA265_RS03640 - ATP phosphoribosyltransferase, at 869,611 to 870,462 _RS03640 CA265_RS03645: CA265_RS03645 - L,D-transpeptidase, at 870,738 to 872,300 _RS03645 CA265_RS03650: CA265_RS03650 - NUDIX hydrolase, at 872,371 to 873,063 _RS03650 CA265_RS03655: CA265_RS03655 - phosphoribosylpyrophosphate synthetase, at 873,132 to 873,965 _RS03655 Position (kb) 870 871 872 873Strain fitness (log2 ratio) -7 -6 -5 -4 -3 -2 -1 0 1 2 3at 869.815 kb on + strand, within CA265_RS03640at 869.815 kb on + strand, within CA265_RS03640at 869.816 kb on - strand, within CA265_RS03640at 869.825 kb on + strand, within CA265_RS03640at 869.826 kb on - strand, within CA265_RS03640at 869.848 kb on + strand, within CA265_RS03640at 869.968 kb on + strand, within CA265_RS03640at 869.987 kb on - strand, within CA265_RS03640at 869.987 kb on - strand, within CA265_RS03640at 870.017 kb on - strand, within CA265_RS03640at 870.034 kb on + strand, within CA265_RS03640at 870.108 kb on - strand, within CA265_RS03640at 870.120 kb on + strand, within CA265_RS03640at 870.239 kb on - strand, within CA265_RS03640at 870.286 kb on + strand, within CA265_RS03640at 870.383 kb on - strandat 870.401 kb on - strandat 870.401 kb on - strandat 870.473 kb on - strandat 870.474 kb on + strandat 870.530 kb on - strandat 870.556 kb on - strandat 870.562 kb on - strandat 870.593 kb on - strandat 870.605 kb on - strandat 870.637 kb on - strandat 870.675 kb on + strandat 870.687 kb on - strandat 870.698 kb on - strandat 870.707 kb on - strandat 870.801 kb on - strandat 870.874 kb on + strandat 870.874 kb on + strandat 870.967 kb on - strand, within CA265_RS03645at 870.978 kb on - strand, within CA265_RS03645at 870.987 kb on - strand, within CA265_RS03645at 871.030 kb on - strand, within CA265_RS03645at 871.058 kb on + strand, within CA265_RS03645at 871.106 kb on - strand, within CA265_RS03645at 871.168 kb on + strand, within CA265_RS03645at 871.169 kb on - strand, within CA265_RS03645at 871.199 kb on + strand, within CA265_RS03645at 871.212 kb on + strand, within CA265_RS03645at 871.251 kb on + strand, within CA265_RS03645at 871.252 kb on - strand, within CA265_RS03645at 871.280 kb on - strand, within CA265_RS03645at 871.289 kb on + strand, within CA265_RS03645at 871.320 kb on - strand, within CA265_RS03645at 871.324 kb on + strand, within CA265_RS03645at 871.354 kb on - strand, within CA265_RS03645at 871.355 kb on + strand, within CA265_RS03645at 871.379 kb on - strand, within CA265_RS03645at 871.464 kb on + strand, within CA265_RS03645at 871.464 kb on + strand, within CA265_RS03645at 871.465 kb on - strand, within CA265_RS03645at 871.465 kb on - strand, within CA265_RS03645at 871.522 kb on + strand, within CA265_RS03645at 871.527 kb on - strand, within CA265_RS03645at 871.575 kb on - strand, within CA265_RS03645at 871.741 kb on - strand, within CA265_RS03645at 871.744 kb on - strand, within CA265_RS03645at 871.744 kb on - strand, within CA265_RS03645at 871.833 kb on - strand, within CA265_RS03645at 871.920 kb on + strand, within CA265_RS03645at 871.937 kb on + strand, within CA265_RS03645at 871.992 kb on - strand, within CA265_RS03645at 872.043 kb on + strand, within CA265_RS03645at 872.044 kb on - strand, within CA265_RS03645at 872.085 kb on - strand, within CA265_RS03645at 872.085 kb on - strand, within CA265_RS03645at 872.087 kb on + strand, within CA265_RS03645at 872.088 kb on - strand, within CA265_RS03645at 872.096 kb on - strand, within CA265_RS03645at 872.139 kb on - strand, within CA265_RS03645at 872.202 kb on + strandat 872.203 kb on - strandat 872.203 kb on - strandat 872.356 kb on + strandat 872.356 kb on + strandat 872.441 kb on + strand, within CA265_RS03650at 872.472 kb on - strand, within CA265_RS03650at 872.490 kb on - strand, within CA265_RS03650at 872.534 kb on + strand, within CA265_RS03650at 872.607 kb on + strand, within CA265_RS03650at 872.608 kb on - strand, within CA265_RS03650at 872.648 kb on - strand, within CA265_RS03650at 872.660 kb on + strand, within CA265_RS03650at 872.754 kb on + strand, within CA265_RS03650at 872.826 kb on - strand, within CA265_RS03650at 872.867 kb on - strand, within CA265_RS03650at 872.950 kb on - strand, within CA265_RS03650at 873.013 kb on + strandat 873.137 kb on - strandat 873.222 kb on - strand, within CA265_RS03655at 873.261 kb on - strand, within CA265_RS03655

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Per-strain Table

Position Strand Gene LocusTag Fraction Maltitol 20mM (C)
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869,815 + CA265_RS03640 0.24 -3.9
869,815 + CA265_RS03640 0.24 -0.7
869,816 - CA265_RS03640 0.24 +0.2
869,825 + CA265_RS03640 0.25 -1.4
869,826 - CA265_RS03640 0.25 -0.4
869,848 + CA265_RS03640 0.28 -1.4
869,968 + CA265_RS03640 0.42 -4.0
869,987 - CA265_RS03640 0.44 -0.8
869,987 - CA265_RS03640 0.44 -5.3
870,017 - CA265_RS03640 0.48 -1.8
870,034 + CA265_RS03640 0.50 -4.9
870,108 - CA265_RS03640 0.58 -2.6
870,120 + CA265_RS03640 0.60 -0.5
870,239 - CA265_RS03640 0.74 -0.5
870,286 + CA265_RS03640 0.79 -3.1
870,383 - -1.2
870,401 - -3.6
870,401 - -6.8
870,473 - +1.5
870,474 + -2.1
870,530 - +0.5
870,556 - -0.8
870,562 - -1.8
870,593 - -3.8
870,605 - -4.7
870,637 - -3.7
870,675 + -1.2
870,687 - -0.3
870,698 - -1.7
870,707 - +1.0
870,801 - -3.3
870,874 + +0.4
870,874 + -0.0
870,967 - CA265_RS03645 0.15 +0.2
870,978 - CA265_RS03645 0.15 +0.4
870,987 - CA265_RS03645 0.16 +2.3
871,030 - CA265_RS03645 0.19 +1.5
871,058 + CA265_RS03645 0.20 +1.4
871,106 - CA265_RS03645 0.24 +2.4
871,168 + CA265_RS03645 0.28 +2.1
871,169 - CA265_RS03645 0.28 +0.3
871,199 + CA265_RS03645 0.29 -0.2
871,212 + CA265_RS03645 0.30 +1.8
871,251 + CA265_RS03645 0.33 +0.4
871,252 - CA265_RS03645 0.33 -0.7
871,280 - CA265_RS03645 0.35 +0.9
871,289 + CA265_RS03645 0.35 +0.4
871,320 - CA265_RS03645 0.37 +0.4
871,324 + CA265_RS03645 0.37 -2.1
871,354 - CA265_RS03645 0.39 +1.3
871,355 + CA265_RS03645 0.39 -1.2
871,379 - CA265_RS03645 0.41 +1.4
871,464 + CA265_RS03645 0.46 +1.5
871,464 + CA265_RS03645 0.46 +1.0
871,465 - CA265_RS03645 0.47 -0.3
871,465 - CA265_RS03645 0.47 +1.9
871,522 + CA265_RS03645 0.50 +2.1
871,527 - CA265_RS03645 0.50 +1.0
871,575 - CA265_RS03645 0.54 -1.2
871,741 - CA265_RS03645 0.64 +1.8
871,744 - CA265_RS03645 0.64 +0.2
871,744 - CA265_RS03645 0.64 +0.8
871,833 - CA265_RS03645 0.70 +1.4
871,920 + CA265_RS03645 0.76 +0.9
871,937 + CA265_RS03645 0.77 -2.4
871,992 - CA265_RS03645 0.80 -0.5
872,043 + CA265_RS03645 0.83 +3.0
872,044 - CA265_RS03645 0.84 +0.1
872,085 - CA265_RS03645 0.86 +0.2
872,085 - CA265_RS03645 0.86 +1.0
872,087 + CA265_RS03645 0.86 -2.2
872,088 - CA265_RS03645 0.86 +0.3
872,096 - CA265_RS03645 0.87 +1.6
872,139 - CA265_RS03645 0.90 -2.0
872,202 + -1.5
872,203 - +0.5
872,203 - +0.6
872,356 + -0.6
872,356 + +1.0
872,441 + CA265_RS03650 0.10 -0.9
872,472 - CA265_RS03650 0.15 +1.4
872,490 - CA265_RS03650 0.17 +1.0
872,534 + CA265_RS03650 0.24 -3.4
872,607 + CA265_RS03650 0.34 -1.0
872,608 - CA265_RS03650 0.34 +1.9
872,648 - CA265_RS03650 0.40 +1.6
872,660 + CA265_RS03650 0.42 -1.4
872,754 + CA265_RS03650 0.55 -3.1
872,826 - CA265_RS03650 0.66 +1.0
872,867 - CA265_RS03650 0.72 +0.5
872,950 - CA265_RS03650 0.84 +0.0
873,013 + +0.2
873,137 - -2.8
873,222 - CA265_RS03655 0.11 -3.6
873,261 - CA265_RS03655 0.15 -0.9

Or see this region's nucleotide sequence