Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS20780

Experiment: Recovery broth with Isovaleric 75 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBBR_RS13545 and BBR_RS13550 are separated by 108 nucleotidesBBR_RS13550 and BBR_RS20780 overlap by 70 nucleotidesBBR_RS20780 and BBR_RS13555 overlap by 2 nucleotides BBR_RS13545: BBR_RS13545 - DUF4143 domain-containing protein, at 810,002 to 811,363 _RS13545 BBR_RS13550: BBR_RS13550 - DUF47 domain-containing protein, at 811,472 to 812,089 _RS13550 BBR_RS20780: BBR_RS20780 - hypothetical protein, at 812,020 to 812,304 _RS20780 BBR_RS13555: BBR_RS13555 - excinuclease ABC subunit A, at 812,303 to 814,807 _RS13555 Position (kb) 812 813Strain fitness (log2 ratio) -2 -1 0 1 2at 811.029 kb on - strand, within BBR_RS13545at 811.114 kb on - strand, within BBR_RS13545at 811.195 kb on - strand, within BBR_RS13545at 811.196 kb on + strand, within BBR_RS13545at 811.230 kb on + strandat 811.290 kb on - strandat 811.342 kb on + strandat 811.342 kb on + strandat 811.352 kb on - strandat 811.469 kb on + strandat 811.479 kb on - strandat 811.515 kb on - strandat 811.519 kb on + strandat 811.519 kb on + strandat 811.519 kb on + strandat 811.525 kb on - strandat 811.527 kb on - strandat 811.527 kb on - strandat 811.533 kb on - strandat 811.596 kb on + strand, within BBR_RS13550at 811.613 kb on + strand, within BBR_RS13550at 811.640 kb on + strand, within BBR_RS13550at 811.675 kb on - strand, within BBR_RS13550at 811.678 kb on + strand, within BBR_RS13550at 811.678 kb on + strand, within BBR_RS13550at 811.720 kb on + strand, within BBR_RS13550at 811.736 kb on + strand, within BBR_RS13550at 811.746 kb on + strand, within BBR_RS13550at 811.759 kb on - strand, within BBR_RS13550at 811.787 kb on - strand, within BBR_RS13550at 811.811 kb on + strand, within BBR_RS13550at 811.844 kb on + strand, within BBR_RS13550at 811.859 kb on + strand, within BBR_RS13550at 811.859 kb on + strand, within BBR_RS13550at 811.859 kb on + strand, within BBR_RS13550at 811.860 kb on - strand, within BBR_RS13550at 811.865 kb on - strand, within BBR_RS13550at 811.867 kb on - strand, within BBR_RS13550at 811.880 kb on - strand, within BBR_RS13550at 811.886 kb on - strand, within BBR_RS13550at 811.965 kb on + strand, within BBR_RS13550at 811.975 kb on + strand, within BBR_RS13550at 811.981 kb on - strand, within BBR_RS13550at 811.997 kb on + strand, within BBR_RS13550at 812.002 kb on + strand, within BBR_RS13550at 812.016 kb on + strand, within BBR_RS13550at 812.028 kb on + strandat 812.177 kb on + strand, within BBR_RS20780at 812.185 kb on + strand, within BBR_RS20780at 812.226 kb on - strand, within BBR_RS20780at 812.272 kb on + strand, within BBR_RS20780at 812.275 kb on + strand, within BBR_RS20780at 812.281 kb on - strandat 812.289 kb on + strandat 812.294 kb on + strandat 812.336 kb on - strandat 812.359 kb on + strandat 812.408 kb on + strandat 812.491 kb on + strandat 812.496 kb on + strandat 812.524 kb on - strandat 812.534 kb on - strandat 812.534 kb on - strandat 812.541 kb on + strandat 812.546 kb on + strandat 812.546 kb on + strandat 812.546 kb on + strandat 812.554 kb on - strand, within BBR_RS13555at 812.573 kb on - strand, within BBR_RS13555at 812.611 kb on - strand, within BBR_RS13555at 812.632 kb on + strand, within BBR_RS13555at 812.632 kb on + strand, within BBR_RS13555at 812.632 kb on + strand, within BBR_RS13555at 812.632 kb on + strand, within BBR_RS13555at 812.640 kb on - strand, within BBR_RS13555at 812.640 kb on - strand, within BBR_RS13555at 812.640 kb on - strand, within BBR_RS13555at 812.640 kb on - strand, within BBR_RS13555at 812.640 kb on - strand, within BBR_RS13555at 812.640 kb on - strand, within BBR_RS13555at 812.655 kb on - strand, within BBR_RS13555at 812.667 kb on + strand, within BBR_RS13555at 812.731 kb on + strand, within BBR_RS13555at 812.740 kb on - strand, within BBR_RS13555at 812.740 kb on - strand, within BBR_RS13555at 812.742 kb on + strand, within BBR_RS13555at 812.745 kb on - strand, within BBR_RS13555at 812.818 kb on - strand, within BBR_RS13555at 812.839 kb on + strand, within BBR_RS13555at 812.865 kb on + strand, within BBR_RS13555at 812.930 kb on - strand, within BBR_RS13555at 812.939 kb on - strand, within BBR_RS13555at 812.944 kb on - strand, within BBR_RS13555at 812.991 kb on + strand, within BBR_RS13555at 812.991 kb on + strand, within BBR_RS13555at 812.999 kb on - strand, within BBR_RS13555at 813.094 kb on + strand, within BBR_RS13555at 813.094 kb on + strand, within BBR_RS13555at 813.094 kb on + strand, within BBR_RS13555at 813.094 kb on + strand, within BBR_RS13555at 813.101 kb on + strand, within BBR_RS13555at 813.106 kb on + strand, within BBR_RS13555at 813.109 kb on - strand, within BBR_RS13555at 813.113 kb on + strand, within BBR_RS13555at 813.118 kb on - strand, within BBR_RS13555at 813.135 kb on - strand, within BBR_RS13555at 813.149 kb on + strand, within BBR_RS13555at 813.157 kb on - strand, within BBR_RS13555at 813.157 kb on - strand, within BBR_RS13555at 813.157 kb on - strand, within BBR_RS13555at 813.231 kb on + strand, within BBR_RS13555at 813.239 kb on - strand, within BBR_RS13555at 813.243 kb on - strand, within BBR_RS13555at 813.246 kb on + strand, within BBR_RS13555at 813.246 kb on + strand, within BBR_RS13555at 813.265 kb on - strand, within BBR_RS13555at 813.277 kb on - strand, within BBR_RS13555

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Per-strain Table

Position Strand Gene LocusTag Fraction Recovery broth with Isovaleric 75 mM
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811,029 - BBR_RS13545 0.75 +0.2
811,114 - BBR_RS13545 0.82 -0.3
811,195 - BBR_RS13545 0.88 +0.6
811,196 + BBR_RS13545 0.88 +0.1
811,230 + +0.6
811,290 - -1.5
811,342 + -0.6
811,342 + -1.6
811,352 - +0.7
811,469 + +0.2
811,479 - +0.1
811,515 - +0.2
811,519 + +0.5
811,519 + -0.3
811,519 + -0.3
811,525 - +0.0
811,527 - -1.5
811,527 - -0.4
811,533 - -0.4
811,596 + BBR_RS13550 0.20 +0.7
811,613 + BBR_RS13550 0.23 +0.7
811,640 + BBR_RS13550 0.27 +0.2
811,675 - BBR_RS13550 0.33 -0.8
811,678 + BBR_RS13550 0.33 -0.4
811,678 + BBR_RS13550 0.33 -0.5
811,720 + BBR_RS13550 0.40 -0.5
811,736 + BBR_RS13550 0.43 -0.1
811,746 + BBR_RS13550 0.44 +0.4
811,759 - BBR_RS13550 0.46 +0.7
811,787 - BBR_RS13550 0.51 -0.4
811,811 + BBR_RS13550 0.55 -0.1
811,844 + BBR_RS13550 0.60 +0.8
811,859 + BBR_RS13550 0.63 -0.0
811,859 + BBR_RS13550 0.63 +0.4
811,859 + BBR_RS13550 0.63 -0.4
811,860 - BBR_RS13550 0.63 +0.1
811,865 - BBR_RS13550 0.64 +0.6
811,867 - BBR_RS13550 0.64 +0.2
811,880 - BBR_RS13550 0.66 -1.8
811,886 - BBR_RS13550 0.67 -0.3
811,965 + BBR_RS13550 0.80 +0.4
811,975 + BBR_RS13550 0.81 -0.8
811,981 - BBR_RS13550 0.82 +1.0
811,997 + BBR_RS13550 0.85 +0.3
812,002 + BBR_RS13550 0.86 -0.0
812,016 + BBR_RS13550 0.88 +0.1
812,028 + +0.2
812,177 + BBR_RS20780 0.55 +1.2
812,185 + BBR_RS20780 0.58 +0.9
812,226 - BBR_RS20780 0.72 -0.2
812,272 + BBR_RS20780 0.88 -0.2
812,275 + BBR_RS20780 0.89 -0.2
812,281 - +0.5
812,289 + -0.4
812,294 + -0.4
812,336 - +0.2
812,359 + -0.4
812,408 + +0.7
812,491 + +0.2
812,496 + +0.1
812,524 - +0.4
812,534 - +0.3
812,534 - +0.5
812,541 + -0.8
812,546 + -0.2
812,546 + +0.0
812,546 + -0.3
812,554 - BBR_RS13555 0.10 -0.2
812,573 - BBR_RS13555 0.11 -0.2
812,611 - BBR_RS13555 0.12 -0.7
812,632 + BBR_RS13555 0.13 -1.1
812,632 + BBR_RS13555 0.13 -1.8
812,632 + BBR_RS13555 0.13 +0.2
812,632 + BBR_RS13555 0.13 -1.0
812,640 - BBR_RS13555 0.13 -0.0
812,640 - BBR_RS13555 0.13 +0.7
812,640 - BBR_RS13555 0.13 -0.7
812,640 - BBR_RS13555 0.13 +0.3
812,640 - BBR_RS13555 0.13 +1.6
812,640 - BBR_RS13555 0.13 -0.1
812,655 - BBR_RS13555 0.14 -0.1
812,667 + BBR_RS13555 0.15 -0.6
812,731 + BBR_RS13555 0.17 +0.1
812,740 - BBR_RS13555 0.17 -0.6
812,740 - BBR_RS13555 0.17 +0.2
812,742 + BBR_RS13555 0.18 +0.6
812,745 - BBR_RS13555 0.18 -0.0
812,818 - BBR_RS13555 0.21 -0.8
812,839 + BBR_RS13555 0.21 -1.4
812,865 + BBR_RS13555 0.22 -0.2
812,930 - BBR_RS13555 0.25 +1.1
812,939 - BBR_RS13555 0.25 -0.1
812,944 - BBR_RS13555 0.26 -0.5
812,991 + BBR_RS13555 0.27 -0.0
812,991 + BBR_RS13555 0.27 +0.2
812,999 - BBR_RS13555 0.28 +0.2
813,094 + BBR_RS13555 0.32 -0.6
813,094 + BBR_RS13555 0.32 -0.5
813,094 + BBR_RS13555 0.32 +1.9
813,094 + BBR_RS13555 0.32 +1.1
813,101 + BBR_RS13555 0.32 +0.9
813,106 + BBR_RS13555 0.32 +0.2
813,109 - BBR_RS13555 0.32 -0.3
813,113 + BBR_RS13555 0.32 -0.5
813,118 - BBR_RS13555 0.33 +0.3
813,135 - BBR_RS13555 0.33 -1.0
813,149 + BBR_RS13555 0.34 +0.4
813,157 - BBR_RS13555 0.34 -0.4
813,157 - BBR_RS13555 0.34 +0.7
813,157 - BBR_RS13555 0.34 -0.1
813,231 + BBR_RS13555 0.37 +0.3
813,239 - BBR_RS13555 0.37 +0.0
813,243 - BBR_RS13555 0.38 -1.4
813,246 + BBR_RS13555 0.38 +0.2
813,246 + BBR_RS13555 0.38 -1.2
813,265 - BBR_RS13555 0.38 +0.2
813,277 - BBR_RS13555 0.39 -0.1

Or see this region's nucleotide sequence