Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS19710

Experiment: Recovery broth with Isovaleric 75 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Recovery broth with Isovaleric 75 mM
2,209,143	-				+0.1
2,209,145	+				-0.3
2,209,154	+				+0.3
2,209,156	+				+0.9
2,209,207	+				-0.1
2,209,212	+				-0.0
2,209,215	-				+0.2
2,209,215	-				+0.3
2,209,215	-				+0.5
2,209,250	-				-0.2
2,209,269	+				-0.2
2,209,271	+				-0.3
2,209,279	+				+0.2
2,209,279	-				-0.4
2,209,292	-		BBR_RS19705	0.11	-0.8
2,209,296	+		BBR_RS19705	0.11	+0.2
2,209,298	+		BBR_RS19705	0.12	-0.8
2,209,298	+		BBR_RS19705	0.12	+0.7
2,209,301	-		BBR_RS19705	0.12	-0.0
2,209,311	-		BBR_RS19705	0.13	+0.7
2,209,314	-		BBR_RS19705	0.13	-0.0
2,209,314	-		BBR_RS19705	0.13	+0.1
2,209,334	-		BBR_RS19705	0.15	+0.1
2,209,335	+		BBR_RS19705	0.15	+0.2
2,209,339	+		BBR_RS19705	0.16	+0.1
2,209,369	+		BBR_RS19705	0.19	+0.0
2,209,372	-		BBR_RS19705	0.19	+0.3
2,209,377	-		BBR_RS19705	0.20	+1.0
2,209,382	-		BBR_RS19705	0.21	-0.2
2,209,440	+		BBR_RS19705	0.27	+1.1
2,209,472	-		BBR_RS19705	0.30	+0.2
2,209,474	+		BBR_RS19705	0.30	+0.9
2,209,474	+		BBR_RS19705	0.30	-0.0
2,209,499	+		BBR_RS19705	0.33	-0.2
2,209,511	+		BBR_RS19705	0.34	-0.1
2,209,512	+		BBR_RS19705	0.35	-0.2
2,209,512	+		BBR_RS19705	0.35	-0.9
2,209,512	+		BBR_RS19705	0.35	+0.3
2,209,520	-		BBR_RS19705	0.35	+0.4
2,209,520	-		BBR_RS19705	0.35	+0.7
2,209,520	-		BBR_RS19705	0.35	+0.5
2,209,520	-		BBR_RS19705	0.35	-0.6
2,209,526	-		BBR_RS19705	0.36	-0.1
2,209,526	-		BBR_RS19705	0.36	-0.1
2,209,528	-		BBR_RS19705	0.36	+0.0
2,209,570	+		BBR_RS19705	0.41	+0.1
2,209,581	-		BBR_RS19705	0.42	-0.6
2,209,583	+		BBR_RS19705	0.42	-0.7
2,209,590	+		BBR_RS19705	0.43	-0.4
2,209,601	-		BBR_RS19705	0.44	-0.5
2,209,601	-		BBR_RS19705	0.44	-1.0
2,209,622	-		BBR_RS19705	0.46	+0.7
2,209,626	+		BBR_RS19705	0.47	+0.0
2,209,627	-		BBR_RS19705	0.47	-0.7
2,209,634	+		BBR_RS19705	0.48	-0.4
2,209,634	-		BBR_RS19705	0.48	+0.3
2,209,648	+		BBR_RS19705	0.49	+0.5
2,209,654	+		BBR_RS19705	0.50	+0.4
2,209,656	-		BBR_RS19705	0.50	-1.1
2,209,656	-		BBR_RS19705	0.50	+0.3
2,209,656	-		BBR_RS19705	0.50	+1.0
2,209,656	-		BBR_RS19705	0.50	+0.0
2,209,656	-		BBR_RS19705	0.50	+0.1
2,209,659	+		BBR_RS19705	0.50	-1.0
2,209,669	+		BBR_RS19705	0.51	+0.6
2,209,724	+		BBR_RS19705	0.57	+0.2
2,209,734	+		BBR_RS19705	0.58	+0.3
2,209,735	-		BBR_RS19705	0.58	-0.5
2,209,750	-		BBR_RS19705	0.60	-0.3
2,209,762	+		BBR_RS19705	0.61	+0.2
2,209,769	-		BBR_RS19705	0.62	+0.2
2,209,772	+		BBR_RS19705	0.62	-1.3
2,209,779	+		BBR_RS19705	0.63	+0.6
2,209,796	+		BBR_RS19705	0.65	+0.1
2,209,796	+		BBR_RS19705	0.65	-0.3
2,209,798	+		BBR_RS19705	0.65	+0.3
2,209,854	+		BBR_RS19705	0.71	-0.0
2,209,859	+		BBR_RS19705	0.72	-0.0
2,209,859	+		BBR_RS19705	0.72	+0.4
2,209,861	-		BBR_RS19705	0.72	-1.4
2,209,871	-		BBR_RS19705	0.73	-0.2
2,209,871	-		BBR_RS19705	0.73	+0.2
2,209,875	+		BBR_RS19705	0.74	+0.3
2,209,883	-		BBR_RS19705	0.74	-0.1
2,209,885	+		BBR_RS19705	0.75	-0.0
2,209,885	+		BBR_RS19705	0.75	-0.4
2,209,975	+		BBR_RS19705	0.84	+0.2
2,209,983	-		BBR_RS19705	0.85	-0.9
2,210,005	+		BBR_RS19705	0.88	-1.3
2,210,037	+				+0.4
2,210,050	+				-0.4
2,210,072	-				+0.2
2,210,072	-				+0.2
2,210,101	+				+0.3
2,210,101	+				+0.7
2,210,103	+				-0.5
2,210,105	+				-0.3
2,210,105	+				+0.4
2,210,108	+				+0.2
2,210,109	-				+0.1
2,210,109	-				+0.4
2,210,148	+				+0.4
2,210,148	+				-0.7
2,210,158	-				+0.4
2,210,166	-				+0.3
2,210,168	+				+0.3
2,210,168	+				+0.3
2,210,168	+				-0.0
2,210,174	+				+0.2
2,210,174	+				-0.1
2,210,174	+				+0.2
2,210,182	-				+0.2
2,210,182	-				-0.3
2,210,182	-				-0.4
2,210,190	-				+0.6
2,210,244	-		BBR_RS19710	0.13	+0.7
2,210,244	-		BBR_RS19710	0.13	-0.1
2,210,252	+		BBR_RS19710	0.14	+0.5
2,210,262	+		BBR_RS19710	0.15	-0.2
2,210,262	+		BBR_RS19710	0.15	+1.3
2,210,264	+		BBR_RS19710	0.15	+1.0
2,210,266	+		BBR_RS19710	0.16	-0.6
2,210,267	-		BBR_RS19710	0.16	-0.5
2,210,270	-		BBR_RS19710	0.16	+0.3
2,210,272	+		BBR_RS19710	0.16	+0.5
2,210,290	+		BBR_RS19710	0.19	-0.0
2,210,292	+		BBR_RS19710	0.19	+0.0
2,210,292	+		BBR_RS19710	0.19	-0.6
2,210,292	+		BBR_RS19710	0.19	+0.8
2,210,298	-		BBR_RS19710	0.20	+0.8
2,210,300	-		BBR_RS19710	0.20	+0.3
2,210,313	+		BBR_RS19710	0.21	+0.3
2,210,345	+		BBR_RS19710	0.25	+0.0
2,210,351	-		BBR_RS19710	0.26	+0.1
2,210,379	+		BBR_RS19710	0.29	+0.5
2,210,392	-		BBR_RS19710	0.31	-0.8
2,210,424	+		BBR_RS19710	0.35	+0.6
2,210,424	+		BBR_RS19710	0.35	+0.3
2,210,432	-		BBR_RS19710	0.36	-0.2
2,210,441	+		BBR_RS19710	0.37	-1.1
2,210,442	-		BBR_RS19710	0.37	-0.0
2,210,460	-		BBR_RS19710	0.39	-0.4
2,210,464	-		BBR_RS19710	0.40	-0.4
2,210,470	+		BBR_RS19710	0.41	+0.1
2,210,478	-		BBR_RS19710	0.41	+0.1
2,210,480	-		BBR_RS19710	0.42	+0.6
2,210,487	+		BBR_RS19710	0.43	-1.5
2,210,487	+		BBR_RS19710	0.43	+0.9
2,210,493	-		BBR_RS19710	0.43	-1.6
2,210,514	-		BBR_RS19710	0.46	-0.1
2,210,515	-		BBR_RS19710	0.46	+0.3
2,210,548	+		BBR_RS19710	0.50	+0.3
2,210,551	-		BBR_RS19710	0.50	+0.6
2,210,588	-		BBR_RS19710	0.55	-0.9
2,210,591	+		BBR_RS19710	0.55	+0.2
2,210,593	+		BBR_RS19710	0.55	+0.4
2,210,593	+		BBR_RS19710	0.55	+0.2
2,210,593	+		BBR_RS19710	0.55	+0.2
2,210,601	+		BBR_RS19710	0.56	-0.1
2,210,601	+		BBR_RS19710	0.56	+0.9
2,210,606	+		BBR_RS19710	0.57	+0.7
2,210,606	+		BBR_RS19710	0.57	-0.6
2,210,606	+		BBR_RS19710	0.57	-0.1
2,210,609	-		BBR_RS19710	0.57	-0.6
2,210,609	-		BBR_RS19710	0.57	+0.2
2,210,609	-		BBR_RS19710	0.57	-0.5
2,210,614	-		BBR_RS19710	0.58	+0.7
2,210,623	-		BBR_RS19710	0.59	+0.3
2,210,671	-		BBR_RS19710	0.65	+0.5
2,210,678	-		BBR_RS19710	0.66	+0.4
2,210,700	-		BBR_RS19710	0.68	+0.3
2,210,706	+		BBR_RS19710	0.69	+1.2
2,210,725	-		BBR_RS19710	0.72	+0.7
2,210,725	-		BBR_RS19710	0.72	-0.2
2,210,725	-		BBR_RS19710	0.72	-0.1
2,210,727	-		BBR_RS19710	0.72	+0.5
2,210,735	+		BBR_RS19710	0.73	-0.3
2,210,735	+		BBR_RS19710	0.73	+0.3
2,210,743	+		BBR_RS19710	0.74	-1.4
2,210,756	+		BBR_RS19710	0.75	-0.1
2,210,756	+		BBR_RS19710	0.75	+0.5
2,210,764	-		BBR_RS19710	0.76	+2.0
2,210,764	-		BBR_RS19710	0.76	-0.1
2,210,764	-		BBR_RS19710	0.76	+0.1
2,210,764	-		BBR_RS19710	0.76	+0.4
2,210,771	-		BBR_RS19710	0.77	+0.5
2,210,771	-		BBR_RS19710	0.77	+0.0
2,210,771	-		BBR_RS19710	0.77	+0.5
2,210,773	+		BBR_RS19710	0.77	+0.5
2,210,785	+		BBR_RS19710	0.79	+0.4
2,210,785	+		BBR_RS19710	0.79	+0.6
2,210,816	-		BBR_RS19710	0.83	-0.3
2,210,821	-		BBR_RS19710	0.83	-0.4
2,210,836	-		BBR_RS19710	0.85	+0.6
2,210,871	+		BBR_RS19710	0.89	+0.6
2,210,875	-		BBR_RS19710	0.90	+0.0
2,210,876	+				-0.5
2,210,884	-				+0.6
2,210,888	-				+0.5
2,210,894	+				-0.8
2,210,910	-				+0.2
2,210,914	+				-0.1
2,210,915	-				+0.6
2,210,922	-				-0.4
2,210,961	+				+0.3
2,210,961	+				+0.8
2,210,968	+				-0.4
2,210,968	+				-0.3
2,210,969	-				+0.4
2,210,969	-				+0.6
2,210,969	-				-0.7
2,210,969	-				-2.3
2,210,969	-				-0.4
2,210,969	-				-0.4
2,210,969	-				-0.1
2,210,969	-				-0.7
2,210,969	-				-0.0
2,210,969	-				-0.3
2,210,969	-				-0.1
2,210,978	+				-0.3
2,210,978	+				-0.4
2,210,985	+				-0.2
2,211,008	+				+0.6
2,211,016	-				+0.5
2,211,016	-				-1.1
2,211,016	-				-0.2
2,211,021	-				+0.5
2,211,021	-				+0.3
2,211,034	-				-1.2
2,211,034	-				-0.7
2,211,057	+				-1.6
2,211,057	+				-0.4
2,211,073	-				-1.0
2,211,073	-				-0.0
2,211,078	-				+0.9
2,211,088	-				-0.3
2,211,109	+				-0.6
2,211,109	+				-0.4
2,211,109	+				+0.6
2,211,117	-				-0.2
2,211,117	-				+0.6
2,211,117	-				+0.3
2,211,117	-				+0.9
2,211,132	+		BBR_RS19715	0.12	-0.5
2,211,187	+		BBR_RS19715	0.19	+0.5
2,211,190	-		BBR_RS19715	0.20	+0.1
2,211,192	+		BBR_RS19715	0.20	+0.8
2,211,200	-		BBR_RS19715	0.21	+0.3
2,211,200	-		BBR_RS19715	0.21	+0.3
2,211,223	+		BBR_RS19715	0.24	-0.2
2,211,226	-		BBR_RS19715	0.25	-1.0
2,211,270	+		BBR_RS19715	0.31	-1.0
2,211,277	+		BBR_RS19715	0.32	+1.1
2,211,319	+		BBR_RS19715	0.37	-0.5
2,211,322	+		BBR_RS19715	0.38	+0.1
2,211,325	-		BBR_RS19715	0.38	-0.1
2,211,353	-		BBR_RS19715	0.42	-0.1
2,211,360	+		BBR_RS19715	0.43	+0.3
2,211,360	+		BBR_RS19715	0.43	-0.1
2,211,360	+		BBR_RS19715	0.43	+0.4
2,211,360	+		BBR_RS19715	0.43	+0.0
2,211,360	+		BBR_RS19715	0.43	+0.5
2,211,366	+		BBR_RS19715	0.44	+0.4
2,211,368	-		BBR_RS19715	0.44	-1.9
2,211,368	-		BBR_RS19715	0.44	+0.6
2,211,368	-		BBR_RS19715	0.44	-0.9
2,211,368	-		BBR_RS19715	0.44	+0.2
2,211,368	-		BBR_RS19715	0.44	-0.5
2,211,368	-		BBR_RS19715	0.44	-0.4
2,211,374	-		BBR_RS19715	0.45	+0.1
2,211,398	+		BBR_RS19715	0.48	+0.5
2,211,461	-		BBR_RS19715	0.57	+0.5
2,211,461	-		BBR_RS19715	0.57	+0.4
2,211,467	+		BBR_RS19715	0.58	+0.1
2,211,468	+		BBR_RS19715	0.58	+0.4
2,211,468	+		BBR_RS19715	0.58	-0.8
2,211,468	+		BBR_RS19715	0.58	-0.3
2,211,475	+		BBR_RS19715	0.59	+0.0
2,211,475	+		BBR_RS19715	0.59	+0.1
2,211,476	-		BBR_RS19715	0.59	+0.1
2,211,483	-		BBR_RS19715	0.60	+0.1
2,211,488	-		BBR_RS19715	0.61	-1.0
2,211,491	-		BBR_RS19715	0.61	+0.2
2,211,504	+		BBR_RS19715	0.63	+0.1
2,211,516	-		BBR_RS19715	0.64	+1.2
2,211,518	+		BBR_RS19715	0.65	+0.5
2,211,523	+		BBR_RS19715	0.65	-0.5
2,211,526	-		BBR_RS19715	0.66	-0.5
2,211,526	-		BBR_RS19715	0.66	-0.1
2,211,526	-		BBR_RS19715	0.66	-0.6
2,211,528	+		BBR_RS19715	0.66	-0.0
2,211,531	-		BBR_RS19715	0.67	-1.4
2,211,531	-		BBR_RS19715	0.67	+0.2
2,211,536	-		BBR_RS19715	0.67	-0.4
2,211,536	-		BBR_RS19715	0.67	+0.3
2,211,536	-		BBR_RS19715	0.67	-0.4
2,211,540	+		BBR_RS19715	0.68	-0.0
2,211,540	+		BBR_RS19715	0.68	-0.6
2,211,608	-		BBR_RS19715	0.77	+0.2
2,211,639	-		BBR_RS19715	0.81	-0.3
2,211,649	+		BBR_RS19715	0.83	+0.7
2,211,652	-		BBR_RS19715	0.83	+0.1
2,211,652	-		BBR_RS19715	0.83	-0.2
2,211,657	-		BBR_RS19715	0.84	+0.4
2,211,659	+		BBR_RS19715	0.84	-0.2
2,211,703	+				+0.3
2,211,722	+				-0.8
2,211,734	+				+0.2
2,211,734	+				+0.8
2,211,734	+				-1.1
2,211,734	+				+0.0
2,211,742	-				-0.2
2,211,751	+				+0.3
2,211,752	-				-0.2
2,211,769	+				-0.3
2,211,769	+				+0.8
2,211,769	+				+0.2
2,211,769	+				-0.5
2,211,769	+				-0.8
2,211,769	+				-0.1
2,211,777	-				-0.1
2,211,777	-				-0.2
2,211,777	-				+0.2
2,211,777	-				+0.1
2,211,777	-				-0.3
2,211,777	-				-1.6
2,211,777	-				-0.2
2,211,784	+				+0.4
2,211,792	-				+0.2
2,211,792	-				-0.4
2,211,792	-				-0.3
2,211,792	-				+0.4
2,211,805	+				+0.1
2,211,821	-				+0.5
2,211,824	+				+0.1
2,211,827	-				+0.9
2,211,849	+				+0.2
2,211,863	+				+0.1
2,211,880	-				+0.3
2,211,881	+				+0.2
2,211,881	+				-0.5
2,211,881	+				+0.1
2,211,881	+				+0.5
2,211,884	-				+1.2
2,211,894	-				-0.4
2,211,902	+				+0.4
2,211,902	+				-1.1
2,211,902	+				-0.0
2,211,902	+				+0.2
2,211,902	+				-0.5
2,211,902	+				+0.4
2,211,902	+				-0.1
2,211,902	+				-0.4
2,211,902	+				-0.2
2,211,904	+				-0.5
2,211,904	+				-0.3
2,211,910	-				-0.2
2,211,910	-				-0.6
2,211,910	-				-0.3
2,211,910	-				-1.1
2,211,912	-				-0.5
2,211,912	-				+0.2
2,211,945	+				-0.2