Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS18625

Experiment: Recovery broth with Isovaleric 75 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBBR_RS18615 and BBR_RS18620 are separated by 9 nucleotidesBBR_RS18620 and BBR_RS18625 are separated by 17 nucleotidesBBR_RS18625 and BBR_RS18630 are separated by 120 nucleotidesBBR_RS18630 and BBR_RS18635 overlap by 4 nucleotides BBR_RS18615: BBR_RS18615 - DUF4037 domain-containing protein, at 1,961,380 to 1,963,581 _RS18615 BBR_RS18620: BBR_RS18620 - DUF4125 domain-containing protein, at 1,963,591 to 1,964,223 _RS18620 BBR_RS18625: BBR_RS18625 - alpha/beta hydrolase, at 1,964,241 to 1,965,965 _RS18625 BBR_RS18630: BBR_RS18630 - hypothetical protein, at 1,966,086 to 1,966,805 _RS18630 BBR_RS18635: BBR_RS18635 - PspC domain-containing protein, at 1,966,802 to 1,968,484 _RS18635 Position (kb) 1964 1965 1966Strain fitness (log2 ratio) -1 0 1at 1963.270 kb on - strand, within BBR_RS18615at 1963.280 kb on - strand, within BBR_RS18615at 1963.293 kb on + strand, within BBR_RS18615at 1963.293 kb on + strand, within BBR_RS18615at 1963.293 kb on + strand, within BBR_RS18615at 1963.301 kb on - strand, within BBR_RS18615at 1963.326 kb on + strand, within BBR_RS18615at 1963.351 kb on + strand, within BBR_RS18615at 1963.406 kb on + strandat 1963.474 kb on + strandat 1963.486 kb on + strandat 1963.489 kb on - strandat 1963.494 kb on - strandat 1963.519 kb on - strandat 1963.520 kb on + strandat 1963.535 kb on - strandat 1963.535 kb on - strandat 1963.545 kb on + strandat 1963.557 kb on - strandat 1963.559 kb on + strandat 1963.566 kb on + strandat 1963.566 kb on + strandat 1963.566 kb on + strandat 1963.574 kb on - strandat 1963.595 kb on + strandat 1963.642 kb on + strandat 1963.642 kb on + strandat 1963.664 kb on + strand, within BBR_RS18620at 1963.672 kb on - strand, within BBR_RS18620at 1963.758 kb on + strand, within BBR_RS18620at 1963.759 kb on - strand, within BBR_RS18620at 1963.777 kb on + strand, within BBR_RS18620at 1963.785 kb on - strand, within BBR_RS18620at 1963.790 kb on - strand, within BBR_RS18620at 1963.847 kb on - strand, within BBR_RS18620at 1963.852 kb on + strand, within BBR_RS18620at 1963.860 kb on - strand, within BBR_RS18620at 1963.860 kb on - strand, within BBR_RS18620at 1963.860 kb on - strand, within BBR_RS18620at 1963.879 kb on - strand, within BBR_RS18620at 1963.879 kb on - strand, within BBR_RS18620at 1963.879 kb on - strand, within BBR_RS18620at 1963.886 kb on + strand, within BBR_RS18620at 1963.997 kb on - strand, within BBR_RS18620at 1963.997 kb on - strand, within BBR_RS18620at 1964.080 kb on - strand, within BBR_RS18620at 1964.084 kb on + strand, within BBR_RS18620at 1964.084 kb on + strand, within BBR_RS18620at 1964.144 kb on - strand, within BBR_RS18620at 1964.144 kb on - strand, within BBR_RS18620at 1964.192 kb on + strandat 1964.192 kb on + strandat 1964.192 kb on - strandat 1964.200 kb on - strandat 1964.200 kb on - strandat 1964.200 kb on - strandat 1964.202 kb on + strandat 1964.202 kb on + strandat 1964.210 kb on - strandat 1964.220 kb on - strandat 1964.230 kb on + strandat 1964.236 kb on - strandat 1964.248 kb on - strandat 1964.250 kb on + strandat 1964.250 kb on + strandat 1964.250 kb on + strandat 1964.280 kb on - strandat 1964.282 kb on - strandat 1964.300 kb on + strandat 1964.329 kb on + strandat 1964.337 kb on - strandat 1964.349 kb on - strandat 1964.350 kb on + strandat 1964.358 kb on - strandat 1964.382 kb on - strandat 1964.451 kb on + strand, within BBR_RS18625at 1964.451 kb on + strand, within BBR_RS18625at 1964.468 kb on + strand, within BBR_RS18625at 1964.476 kb on - strand, within BBR_RS18625at 1964.480 kb on + strand, within BBR_RS18625at 1964.496 kb on - strand, within BBR_RS18625at 1964.496 kb on - strand, within BBR_RS18625at 1964.531 kb on - strand, within BBR_RS18625at 1964.541 kb on - strand, within BBR_RS18625at 1964.541 kb on - strand, within BBR_RS18625at 1964.543 kb on + strand, within BBR_RS18625at 1964.543 kb on + strand, within BBR_RS18625at 1964.551 kb on - strand, within BBR_RS18625at 1964.551 kb on - strand, within BBR_RS18625at 1964.556 kb on + strand, within BBR_RS18625at 1964.559 kb on - strand, within BBR_RS18625at 1964.559 kb on - strand, within BBR_RS18625at 1964.564 kb on - strand, within BBR_RS18625at 1964.565 kb on - strand, within BBR_RS18625at 1964.565 kb on - strand, within BBR_RS18625at 1964.571 kb on + strand, within BBR_RS18625at 1964.575 kb on + strand, within BBR_RS18625at 1964.581 kb on + strand, within BBR_RS18625at 1964.589 kb on - strand, within BBR_RS18625at 1964.614 kb on + strand, within BBR_RS18625at 1964.614 kb on + strand, within BBR_RS18625at 1964.622 kb on - strand, within BBR_RS18625at 1964.623 kb on + strand, within BBR_RS18625at 1964.662 kb on + strand, within BBR_RS18625at 1964.662 kb on + strand, within BBR_RS18625at 1964.700 kb on - strand, within BBR_RS18625at 1964.701 kb on - strand, within BBR_RS18625at 1964.740 kb on + strand, within BBR_RS18625at 1964.751 kb on + strand, within BBR_RS18625at 1964.759 kb on - strand, within BBR_RS18625at 1964.787 kb on + strand, within BBR_RS18625at 1964.787 kb on + strand, within BBR_RS18625at 1964.787 kb on + strand, within BBR_RS18625at 1964.795 kb on - strand, within BBR_RS18625at 1964.809 kb on + strand, within BBR_RS18625at 1964.852 kb on + strand, within BBR_RS18625at 1964.871 kb on + strand, within BBR_RS18625at 1964.907 kb on + strand, within BBR_RS18625at 1964.917 kb on - strand, within BBR_RS18625at 1964.924 kb on - strand, within BBR_RS18625at 1964.934 kb on - strand, within BBR_RS18625at 1964.964 kb on - strand, within BBR_RS18625at 1964.964 kb on - strand, within BBR_RS18625at 1964.977 kb on + strand, within BBR_RS18625at 1964.988 kb on + strand, within BBR_RS18625at 1964.996 kb on - strand, within BBR_RS18625at 1965.002 kb on + strand, within BBR_RS18625at 1965.002 kb on + strand, within BBR_RS18625at 1965.003 kb on + strand, within BBR_RS18625at 1965.004 kb on + strand, within BBR_RS18625at 1965.021 kb on + strand, within BBR_RS18625at 1965.036 kb on + strand, within BBR_RS18625at 1965.041 kb on + strand, within BBR_RS18625at 1965.041 kb on + strand, within BBR_RS18625at 1965.041 kb on + strand, within BBR_RS18625at 1965.078 kb on + strand, within BBR_RS18625at 1965.086 kb on + strand, within BBR_RS18625at 1965.086 kb on + strand, within BBR_RS18625at 1965.090 kb on + strand, within BBR_RS18625at 1965.093 kb on - strand, within BBR_RS18625at 1965.116 kb on - strand, within BBR_RS18625at 1965.158 kb on - strand, within BBR_RS18625at 1965.162 kb on + strand, within BBR_RS18625at 1965.162 kb on + strand, within BBR_RS18625at 1965.164 kb on + strand, within BBR_RS18625at 1965.170 kb on - strand, within BBR_RS18625at 1965.196 kb on + strand, within BBR_RS18625at 1965.232 kb on + strand, within BBR_RS18625at 1965.243 kb on + strand, within BBR_RS18625at 1965.261 kb on - strand, within BBR_RS18625at 1965.283 kb on + strand, within BBR_RS18625at 1965.290 kb on + strand, within BBR_RS18625at 1965.290 kb on - strand, within BBR_RS18625at 1965.290 kb on - strand, within BBR_RS18625at 1965.290 kb on - strand, within BBR_RS18625at 1965.317 kb on + strand, within BBR_RS18625at 1965.363 kb on - strand, within BBR_RS18625at 1965.363 kb on - strand, within BBR_RS18625at 1965.391 kb on + strand, within BBR_RS18625at 1965.443 kb on - strand, within BBR_RS18625at 1965.484 kb on + strand, within BBR_RS18625at 1965.492 kb on - strand, within BBR_RS18625at 1965.497 kb on - strand, within BBR_RS18625at 1965.543 kb on + strand, within BBR_RS18625at 1965.551 kb on - strand, within BBR_RS18625at 1965.551 kb on - strand, within BBR_RS18625at 1965.551 kb on - strand, within BBR_RS18625at 1965.553 kb on + strand, within BBR_RS18625at 1965.561 kb on - strand, within BBR_RS18625at 1965.575 kb on - strand, within BBR_RS18625at 1965.575 kb on - strand, within BBR_RS18625at 1965.582 kb on - strand, within BBR_RS18625at 1965.590 kb on + strand, within BBR_RS18625at 1965.593 kb on - strand, within BBR_RS18625at 1965.593 kb on - strand, within BBR_RS18625at 1965.612 kb on - strand, within BBR_RS18625at 1965.613 kb on - strand, within BBR_RS18625at 1965.690 kb on - strand, within BBR_RS18625at 1965.722 kb on + strand, within BBR_RS18625at 1965.753 kb on - strand, within BBR_RS18625at 1965.753 kb on - strand, within BBR_RS18625at 1965.841 kb on - strandat 1965.847 kb on + strandat 1965.847 kb on + strandat 1965.855 kb on - strandat 1965.859 kb on + strandat 1965.867 kb on - strandat 1965.891 kb on - strandat 1965.902 kb on - strandat 1965.946 kb on - strandat 1965.981 kb on - strandat 1965.986 kb on + strandat 1965.986 kb on + strandat 1965.987 kb on + strandat 1965.988 kb on + strandat 1965.994 kb on - strandat 1966.017 kb on + strandat 1966.025 kb on - strandat 1966.121 kb on - strandat 1966.835 kb on - strandat 1966.910 kb on - strandat 1966.917 kb on - strandat 1966.936 kb on - strandat 1966.953 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Recovery broth with Isovaleric 75 mM
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1,963,270 - BBR_RS18615 0.86 -0.1
1,963,280 - BBR_RS18615 0.86 -0.2
1,963,293 + BBR_RS18615 0.87 +0.2
1,963,293 + BBR_RS18615 0.87 -1.1
1,963,293 + BBR_RS18615 0.87 +0.9
1,963,301 - BBR_RS18615 0.87 -0.6
1,963,326 + BBR_RS18615 0.88 -1.0
1,963,351 + BBR_RS18615 0.90 +0.5
1,963,406 + +0.3
1,963,474 + +0.1
1,963,486 + +0.9
1,963,489 - +1.0
1,963,494 - +0.5
1,963,519 - +0.3
1,963,520 + +0.2
1,963,535 - -0.1
1,963,535 - -0.2
1,963,545 + +0.3
1,963,557 - +0.8
1,963,559 + +0.6
1,963,566 + -0.2
1,963,566 + +0.4
1,963,566 + -0.5
1,963,574 - -0.1
1,963,595 + -0.7
1,963,642 + +0.3
1,963,642 + -0.3
1,963,664 + BBR_RS18620 0.12 -0.5
1,963,672 - BBR_RS18620 0.13 -0.4
1,963,758 + BBR_RS18620 0.26 +1.0
1,963,759 - BBR_RS18620 0.27 +0.4
1,963,777 + BBR_RS18620 0.29 +0.0
1,963,785 - BBR_RS18620 0.31 +0.2
1,963,790 - BBR_RS18620 0.31 +0.3
1,963,847 - BBR_RS18620 0.40 -0.9
1,963,852 + BBR_RS18620 0.41 -1.6
1,963,860 - BBR_RS18620 0.42 -0.4
1,963,860 - BBR_RS18620 0.42 +0.1
1,963,860 - BBR_RS18620 0.42 -0.4
1,963,879 - BBR_RS18620 0.45 +0.2
1,963,879 - BBR_RS18620 0.45 +0.8
1,963,879 - BBR_RS18620 0.45 -0.1
1,963,886 + BBR_RS18620 0.47 -0.3
1,963,997 - BBR_RS18620 0.64 +1.3
1,963,997 - BBR_RS18620 0.64 +0.2
1,964,080 - BBR_RS18620 0.77 -0.4
1,964,084 + BBR_RS18620 0.78 -0.2
1,964,084 + BBR_RS18620 0.78 +0.7
1,964,144 - BBR_RS18620 0.87 -0.4
1,964,144 - BBR_RS18620 0.87 +0.7
1,964,192 + +0.5
1,964,192 + +0.1
1,964,192 - -0.2
1,964,200 - +0.3
1,964,200 - -0.2
1,964,200 - +0.1
1,964,202 + -0.2
1,964,202 + +0.3
1,964,210 - +0.8
1,964,220 - +0.5
1,964,230 + +0.6
1,964,236 - +0.1
1,964,248 - -0.6
1,964,250 + +0.0
1,964,250 + +0.3
1,964,250 + +0.1
1,964,280 - +0.0
1,964,282 - +0.3
1,964,300 + +1.2
1,964,329 + +0.0
1,964,337 - -0.3
1,964,349 - +0.7
1,964,350 + +0.3
1,964,358 - -0.1
1,964,382 - -0.2
1,964,451 + BBR_RS18625 0.12 +0.6
1,964,451 + BBR_RS18625 0.12 -0.3
1,964,468 + BBR_RS18625 0.13 -0.8
1,964,476 - BBR_RS18625 0.14 -0.2
1,964,480 + BBR_RS18625 0.14 +0.6
1,964,496 - BBR_RS18625 0.15 +0.4
1,964,496 - BBR_RS18625 0.15 -0.2
1,964,531 - BBR_RS18625 0.17 +0.1
1,964,541 - BBR_RS18625 0.17 -0.6
1,964,541 - BBR_RS18625 0.17 +1.0
1,964,543 + BBR_RS18625 0.18 +0.2
1,964,543 + BBR_RS18625 0.18 +0.7
1,964,551 - BBR_RS18625 0.18 +0.3
1,964,551 - BBR_RS18625 0.18 +0.4
1,964,556 + BBR_RS18625 0.18 -0.7
1,964,559 - BBR_RS18625 0.18 +1.2
1,964,559 - BBR_RS18625 0.18 +0.6
1,964,564 - BBR_RS18625 0.19 -0.2
1,964,565 - BBR_RS18625 0.19 +0.5
1,964,565 - BBR_RS18625 0.19 -0.5
1,964,571 + BBR_RS18625 0.19 -0.1
1,964,575 + BBR_RS18625 0.19 +0.8
1,964,581 + BBR_RS18625 0.20 -0.2
1,964,589 - BBR_RS18625 0.20 -0.6
1,964,614 + BBR_RS18625 0.22 +0.5
1,964,614 + BBR_RS18625 0.22 -0.4
1,964,622 - BBR_RS18625 0.22 +0.2
1,964,623 + BBR_RS18625 0.22 +0.2
1,964,662 + BBR_RS18625 0.24 +0.5
1,964,662 + BBR_RS18625 0.24 -0.1
1,964,700 - BBR_RS18625 0.27 +0.4
1,964,701 - BBR_RS18625 0.27 +0.2
1,964,740 + BBR_RS18625 0.29 -0.6
1,964,751 + BBR_RS18625 0.30 +1.0
1,964,759 - BBR_RS18625 0.30 -0.0
1,964,787 + BBR_RS18625 0.32 -0.7
1,964,787 + BBR_RS18625 0.32 +0.6
1,964,787 + BBR_RS18625 0.32 -0.1
1,964,795 - BBR_RS18625 0.32 +0.1
1,964,809 + BBR_RS18625 0.33 -0.3
1,964,852 + BBR_RS18625 0.35 +0.4
1,964,871 + BBR_RS18625 0.37 +0.6
1,964,907 + BBR_RS18625 0.39 -0.4
1,964,917 - BBR_RS18625 0.39 -0.0
1,964,924 - BBR_RS18625 0.40 +0.9
1,964,934 - BBR_RS18625 0.40 +0.6
1,964,964 - BBR_RS18625 0.42 +0.2
1,964,964 - BBR_RS18625 0.42 +0.1
1,964,977 + BBR_RS18625 0.43 +0.5
1,964,988 + BBR_RS18625 0.43 +0.3
1,964,996 - BBR_RS18625 0.44 +0.8
1,965,002 + BBR_RS18625 0.44 +0.6
1,965,002 + BBR_RS18625 0.44 +1.1
1,965,003 + BBR_RS18625 0.44 +1.0
1,965,004 + BBR_RS18625 0.44 -0.7
1,965,021 + BBR_RS18625 0.45 +0.2
1,965,036 + BBR_RS18625 0.46 +0.6
1,965,041 + BBR_RS18625 0.46 -0.1
1,965,041 + BBR_RS18625 0.46 +0.3
1,965,041 + BBR_RS18625 0.46 +0.3
1,965,078 + BBR_RS18625 0.49 -0.1
1,965,086 + BBR_RS18625 0.49 +0.1
1,965,086 + BBR_RS18625 0.49 +1.0
1,965,090 + BBR_RS18625 0.49 +0.0
1,965,093 - BBR_RS18625 0.49 +0.5
1,965,116 - BBR_RS18625 0.51 +0.2
1,965,158 - BBR_RS18625 0.53 +0.1
1,965,162 + BBR_RS18625 0.53 +0.9
1,965,162 + BBR_RS18625 0.53 +1.0
1,965,164 + BBR_RS18625 0.54 +0.4
1,965,170 - BBR_RS18625 0.54 -0.4
1,965,196 + BBR_RS18625 0.55 +0.4
1,965,232 + BBR_RS18625 0.57 -1.2
1,965,243 + BBR_RS18625 0.58 +0.5
1,965,261 - BBR_RS18625 0.59 -0.2
1,965,283 + BBR_RS18625 0.60 +0.8
1,965,290 + BBR_RS18625 0.61 +0.3
1,965,290 - BBR_RS18625 0.61 -0.4
1,965,290 - BBR_RS18625 0.61 +0.4
1,965,290 - BBR_RS18625 0.61 +0.2
1,965,317 + BBR_RS18625 0.62 -0.5
1,965,363 - BBR_RS18625 0.65 +0.3
1,965,363 - BBR_RS18625 0.65 +0.2
1,965,391 + BBR_RS18625 0.67 +0.6
1,965,443 - BBR_RS18625 0.70 -0.1
1,965,484 + BBR_RS18625 0.72 +1.3
1,965,492 - BBR_RS18625 0.73 +0.6
1,965,497 - BBR_RS18625 0.73 +0.5
1,965,543 + BBR_RS18625 0.75 -0.1
1,965,551 - BBR_RS18625 0.76 +0.3
1,965,551 - BBR_RS18625 0.76 +0.3
1,965,551 - BBR_RS18625 0.76 -0.2
1,965,553 + BBR_RS18625 0.76 +0.2
1,965,561 - BBR_RS18625 0.77 +0.5
1,965,575 - BBR_RS18625 0.77 +0.9
1,965,575 - BBR_RS18625 0.77 +0.0
1,965,582 - BBR_RS18625 0.78 +0.7
1,965,590 + BBR_RS18625 0.78 -0.2
1,965,593 - BBR_RS18625 0.78 +0.1
1,965,593 - BBR_RS18625 0.78 +0.4
1,965,612 - BBR_RS18625 0.79 -0.8
1,965,613 - BBR_RS18625 0.80 +0.0
1,965,690 - BBR_RS18625 0.84 +0.3
1,965,722 + BBR_RS18625 0.86 -0.1
1,965,753 - BBR_RS18625 0.88 -0.4
1,965,753 - BBR_RS18625 0.88 +0.9
1,965,841 - +1.1
1,965,847 + +0.5
1,965,847 + +0.8
1,965,855 - +0.9
1,965,859 + -0.1
1,965,867 - -0.0
1,965,891 - +0.8
1,965,902 - -0.0
1,965,946 - +0.3
1,965,981 - +0.4
1,965,986 + +0.7
1,965,986 + -0.4
1,965,987 + +0.0
1,965,988 + -0.4
1,965,994 - +0.8
1,966,017 + +0.2
1,966,025 - -0.6
1,966,121 - -1.0
1,966,835 - -1.6
1,966,910 - -0.6
1,966,917 - +0.4
1,966,936 - -1.2
1,966,953 - -1.7

Or see this region's nucleotide sequence