Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS18390

Experiment: Recovery broth with Isovaleric 75 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Recovery broth with Isovaleric 75 mM
1,913,040	-		BBR_RS18385	0.40	+0.5
1,913,064	+		BBR_RS18385	0.41	-0.3
1,913,067	+		BBR_RS18385	0.42	+0.4
1,913,070	+		BBR_RS18385	0.42	+0.2
1,913,070	+		BBR_RS18385	0.42	+0.8
1,913,073	-		BBR_RS18385	0.42	-1.8
1,913,075	+		BBR_RS18385	0.42	-0.5
1,913,078	-		BBR_RS18385	0.42	+0.3
1,913,088	+		BBR_RS18385	0.43	+0.5
1,913,090	-		BBR_RS18385	0.43	+0.0
1,913,095	+		BBR_RS18385	0.43	-0.3
1,913,128	-		BBR_RS18385	0.45	+0.0
1,913,188	-		BBR_RS18385	0.49	-0.5
1,913,211	-		BBR_RS18385	0.50	-0.5
1,913,229	-		BBR_RS18385	0.51	+0.9
1,913,241	+		BBR_RS18385	0.52	-0.9
1,913,260	-		BBR_RS18385	0.53	-0.1
1,913,273	+		BBR_RS18385	0.54	-0.9
1,913,276	-		BBR_RS18385	0.54	+0.3
1,913,276	-		BBR_RS18385	0.54	-0.5
1,913,277	+		BBR_RS18385	0.54	+0.5
1,913,277	+		BBR_RS18385	0.54	-0.1
1,913,282	+		BBR_RS18385	0.55	-0.2
1,913,283	-		BBR_RS18385	0.55	-0.2
1,913,287	+		BBR_RS18385	0.55	+0.4
1,913,299	+		BBR_RS18385	0.56	+0.2
1,913,356	+		BBR_RS18385	0.59	+0.4
1,913,367	+		BBR_RS18385	0.60	+0.4
1,913,430	-		BBR_RS18385	0.63	+1.2
1,913,434	+		BBR_RS18385	0.64	-0.1
1,913,434	+		BBR_RS18385	0.64	-0.5
1,913,442	-		BBR_RS18385	0.64	+0.5
1,913,442	-		BBR_RS18385	0.64	+0.1
1,913,442	-		BBR_RS18385	0.64	-0.6
1,913,442	-		BBR_RS18385	0.64	+0.1
1,913,452	-		BBR_RS18385	0.65	-0.2
1,913,452	-		BBR_RS18385	0.65	+0.6
1,913,454	+		BBR_RS18385	0.65	+1.5
1,913,454	+		BBR_RS18385	0.65	-0.0
1,913,459	+		BBR_RS18385	0.65	+1.2
1,913,459	+		BBR_RS18385	0.65	-0.8
1,913,459	+		BBR_RS18385	0.65	-0.3
1,913,462	-		BBR_RS18385	0.65	-1.6
1,913,462	-		BBR_RS18385	0.65	-0.0
1,913,468	+		BBR_RS18385	0.66	-1.5
1,913,485	+		BBR_RS18385	0.67	+0.0
1,913,485	+		BBR_RS18385	0.67	+0.6
1,913,485	+		BBR_RS18385	0.67	-0.0
1,913,529	-		BBR_RS18385	0.69	+0.4
1,913,531	+		BBR_RS18385	0.69	+0.7
1,913,531	+		BBR_RS18385	0.69	-0.3
1,913,533	+		BBR_RS18385	0.70	+0.3
1,913,533	+		BBR_RS18385	0.70	-0.2
1,913,533	+		BBR_RS18385	0.70	+0.2
1,913,533	+		BBR_RS18385	0.70	-1.4
1,913,533	+		BBR_RS18385	0.70	+0.4
1,913,533	+		BBR_RS18385	0.70	+1.3
1,913,533	+		BBR_RS18385	0.70	+0.4
1,913,533	+		BBR_RS18385	0.70	+0.5
1,913,533	+		BBR_RS18385	0.70	+0.2
1,913,541	-		BBR_RS18385	0.70	+0.9
1,913,541	-		BBR_RS18385	0.70	-0.3
1,913,541	-		BBR_RS18385	0.70	-0.1
1,913,541	-		BBR_RS18385	0.70	+0.2
1,913,541	-		BBR_RS18385	0.70	+0.8
1,913,541	-		BBR_RS18385	0.70	-0.1
1,913,541	-		BBR_RS18385	0.70	-0.1
1,913,541	-		BBR_RS18385	0.70	+0.2
1,913,543	-		BBR_RS18385	0.70	+0.9
1,913,551	+		BBR_RS18385	0.71	+0.2
1,913,551	+		BBR_RS18385	0.71	+0.3
1,913,564	-		BBR_RS18385	0.71	+0.5
1,913,564	-		BBR_RS18385	0.71	-0.5
1,913,564	-		BBR_RS18385	0.71	-0.4
1,913,606	-		BBR_RS18385	0.74	+1.3
1,913,633	+		BBR_RS18385	0.76	-0.1
1,913,633	+		BBR_RS18385	0.76	+1.0
1,913,640	+		BBR_RS18385	0.76	+0.3
1,913,650	-		BBR_RS18385	0.77	-0.3
1,913,650	-		BBR_RS18385	0.77	+0.3
1,913,655	-		BBR_RS18385	0.77	+0.4
1,913,665	+		BBR_RS18385	0.78	+0.1
1,913,665	+		BBR_RS18385	0.78	-0.3
1,913,673	-		BBR_RS18385	0.78	+1.0
1,913,716	-		BBR_RS18385	0.81	-0.2
1,913,716	-		BBR_RS18385	0.81	-0.2
1,913,726	+		BBR_RS18385	0.81	-0.6
1,913,726	+		BBR_RS18385	0.81	-0.7
1,913,734	-		BBR_RS18385	0.82	-0.6
1,913,734	-		BBR_RS18385	0.82	+0.0
1,913,741	+		BBR_RS18385	0.82	+0.4
1,913,741	+		BBR_RS18385	0.82	-0.4
1,913,749	-		BBR_RS18385	0.83	+1.4
1,913,749	-		BBR_RS18385	0.83	+0.6
1,913,749	-		BBR_RS18385	0.83	-0.1
1,913,765	+		BBR_RS18385	0.84	-0.2
1,913,771	-		BBR_RS18385	0.84	-0.2
1,913,783	+		BBR_RS18385	0.85	-0.7
1,913,783	+		BBR_RS18385	0.85	-0.3
1,913,783	+		BBR_RS18385	0.85	+0.8
1,913,791	-		BBR_RS18385	0.85	+0.2
1,913,791	-		BBR_RS18385	0.85	+0.3
1,913,802	+		BBR_RS18385	0.86	+0.1
1,913,811	-		BBR_RS18385	0.86	+0.8
1,913,826	-		BBR_RS18385	0.87	+0.8
1,913,837	+		BBR_RS18385	0.88	+0.4
1,913,877	-				+0.2
1,913,894	+				+0.3
1,913,902	-				-0.3
1,913,907	+				-0.1
1,913,914	+				-0.4
1,913,927	-				-1.6
1,913,980	+				-0.5
1,913,980	+				-0.3
1,913,980	+				+0.1
1,913,980	+				-0.4
1,913,980	+				+0.8
1,913,988	-				-0.8
1,913,988	-				-0.1
1,913,988	-				+0.8
1,913,993	-				+0.2
1,914,003	+				-0.7
1,914,007	-				+0.3
1,914,009	+				+0.4
1,914,011	-				-0.0
1,914,026	+				+0.4
1,914,030	-				+0.7
1,914,030	-				+0.9
1,914,030	-				+0.4
1,914,030	-				-0.1
1,914,030	-				+1.1
1,914,030	-				-0.5
1,914,033	+				-0.1
1,914,033	+				+0.9
1,914,040	+				-0.7
1,914,041	-				-0.6
1,914,085	+		BBR_RS18390	0.13	+0.4
1,914,116	+		BBR_RS18390	0.21	+0.9
1,914,130	-		BBR_RS18390	0.25	+0.6
1,914,145	-		BBR_RS18390	0.29	+0.3
1,914,160	+		BBR_RS18390	0.33	+0.3
1,914,160	+		BBR_RS18390	0.33	+1.0
1,914,189	-		BBR_RS18390	0.40	+0.5
1,914,200	+		BBR_RS18390	0.43	-0.3
1,914,208	-		BBR_RS18390	0.45	+0.8
1,914,214	+		BBR_RS18390	0.47	-0.4
1,914,222	+		BBR_RS18390	0.49	+1.3
1,914,258	-		BBR_RS18390	0.59	+0.3
1,914,262	-		BBR_RS18390	0.60	-0.5
1,914,290	-		BBR_RS18390	0.67	-0.3
1,914,294	+		BBR_RS18390	0.68	-0.4
1,914,316	+		BBR_RS18390	0.74	-0.4
1,914,320	+		BBR_RS18390	0.75	-0.4
1,914,321	+		BBR_RS18390	0.75	+0.3
1,914,357	-		BBR_RS18390	0.85	+0.4
1,914,383	-				+0.6
1,914,428	+				+0.0
1,914,435	+				+0.2
1,914,445	-		BBR_RS18395	0.10	+0.4
1,914,466	+		BBR_RS18395	0.17	+0.2
1,914,544	+		BBR_RS18395	0.41	-0.8
1,914,549	+		BBR_RS18395	0.43	-0.4
1,914,558	-		BBR_RS18395	0.45	-0.4
1,914,569	+		BBR_RS18395	0.49	-0.4
1,914,582	+		BBR_RS18395	0.53	-0.7
1,914,584	+		BBR_RS18395	0.54	+0.0
1,914,591	+		BBR_RS18395	0.56	-0.6
1,914,600	+		BBR_RS18395	0.59	-0.3
1,914,645	-		BBR_RS18395	0.73	-0.2
1,914,660	-		BBR_RS18395	0.77	+0.5
1,914,692	+		BBR_RS18395	0.87	-0.1
1,914,697	+		BBR_RS18395	0.89	+0.4
1,914,700	-		BBR_RS18395	0.90	-0.6
1,914,705	-				-0.0
1,914,738	+				-1.1
1,914,738	+				-0.2
1,914,743	+				+0.3
1,914,746	-				-0.8
1,914,746	-				+1.1
1,914,746	-				-0.0
1,914,746	-				+0.5
1,914,759	+				-1.5
1,914,787	-				-1.4
1,914,796	+				+0.2
1,914,804	-				+0.1
1,914,819	+				+0.0
1,914,821	-				+0.2
1,914,833	-				+0.3
1,914,847	+		BBR_RS18400	0.11	+0.2
1,914,853	+		BBR_RS18400	0.11	-0.3
1,914,853	+		BBR_RS18400	0.11	-0.5
1,914,878	-		BBR_RS18400	0.14	+1.0
1,914,878	-		BBR_RS18400	0.14	-0.4
1,914,881	+		BBR_RS18400	0.14	+0.1
1,914,914	-		BBR_RS18400	0.17	+0.1
1,914,923	-		BBR_RS18400	0.17	+0.4
1,914,953	-		BBR_RS18400	0.20	-1.2
1,914,962	-		BBR_RS18400	0.21	-0.2
1,914,962	-		BBR_RS18400	0.21	+0.3
1,914,967	-		BBR_RS18400	0.21	-1.3
1,914,982	+		BBR_RS18400	0.23	-1.1
1,915,004	+		BBR_RS18400	0.25	+1.3
1,915,004	-		BBR_RS18400	0.25	+0.1
1,915,012	-		BBR_RS18400	0.25	+0.7
1,915,014	+		BBR_RS18400	0.25	+1.0
1,915,017	-		BBR_RS18400	0.26	-0.0
1,915,017	-		BBR_RS18400	0.26	-1.0
1,915,018	+		BBR_RS18400	0.26	+0.7
1,915,019	-		BBR_RS18400	0.26	+0.3
1,915,026	-		BBR_RS18400	0.26	-0.7
1,915,026	-		BBR_RS18400	0.26	+0.4
1,915,034	-		BBR_RS18400	0.27	-0.0
1,915,036	+		BBR_RS18400	0.27	+0.1
1,915,036	+		BBR_RS18400	0.27	-0.1
1,915,065	+		BBR_RS18400	0.30	+0.0
1,915,067	+		BBR_RS18400	0.30	+0.0
1,915,080	+		BBR_RS18400	0.31	-0.4
1,915,154	+		BBR_RS18400	0.38	-0.1
1,915,167	+		BBR_RS18400	0.39	+0.6
1,915,175	-		BBR_RS18400	0.39	-0.1
1,915,175	-		BBR_RS18400	0.39	+0.2
1,915,177	+		BBR_RS18400	0.40	+0.2
1,915,177	+		BBR_RS18400	0.40	+0.1
1,915,193	-		BBR_RS18400	0.41	+0.3
1,915,220	+		BBR_RS18400	0.43	+0.4
1,915,249	+		BBR_RS18400	0.46	+1.1
1,915,257	-		BBR_RS18400	0.47	+0.2
1,915,270	+		BBR_RS18400	0.48	-0.2
1,915,270	+		BBR_RS18400	0.48	-0.5
1,915,272	-		BBR_RS18400	0.48	-1.1
1,915,278	-		BBR_RS18400	0.48	+0.8
1,915,278	-		BBR_RS18400	0.48	-0.6
1,915,278	-		BBR_RS18400	0.48	-1.3
1,915,278	-		BBR_RS18400	0.48	-1.1
1,915,278	-		BBR_RS18400	0.48	-0.3
1,915,286	-		BBR_RS18400	0.49	+0.5
1,915,286	-		BBR_RS18400	0.49	+0.4
1,915,298	-		BBR_RS18400	0.50	+0.3
1,915,310	+		BBR_RS18400	0.51	+0.2
1,915,310	+		BBR_RS18400	0.51	-0.1
1,915,310	+		BBR_RS18400	0.51	-0.4
1,915,318	-		BBR_RS18400	0.52	+0.6
1,915,318	-		BBR_RS18400	0.52	-0.0
1,915,337	-		BBR_RS18400	0.54	+0.5
1,915,350	-		BBR_RS18400	0.55	+0.3
1,915,352	+		BBR_RS18400	0.55	+0.1
1,915,352	+		BBR_RS18400	0.55	+2.0
1,915,355	-		BBR_RS18400	0.55	-0.3
1,915,357	+		BBR_RS18400	0.55	+1.0
1,915,360	-		BBR_RS18400	0.56	+0.4
1,915,365	-		BBR_RS18400	0.56	-1.1
1,915,385	+		BBR_RS18400	0.58	+0.1
1,915,387	-		BBR_RS18400	0.58	+0.5
1,915,387	-		BBR_RS18400	0.58	-0.7