Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS15280

Experiment: Recovery broth with Isovaleric 75 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBBR_RS15275 and BBR_RS15280 are separated by 107 nucleotidesBBR_RS15280 and BBR_RS15285 are separated by 128 nucleotides BBR_RS15275: BBR_RS15275 - hypothetical protein, at 1,200,003 to 1,201,898 _RS15275 BBR_RS15280: BBR_RS15280 - hypothetical protein, at 1,202,006 to 1,202,470 _RS15280 BBR_RS15285: BBR_RS15285 - glycogen synthase, at 1,202,599 to 1,203,849 _RS15285 Position (kb) 1202 1203Strain fitness (log2 ratio) -2 -1 0 1at 1201.109 kb on + strand, within BBR_RS15275at 1201.109 kb on + strand, within BBR_RS15275at 1201.126 kb on + strand, within BBR_RS15275at 1201.126 kb on + strand, within BBR_RS15275at 1201.174 kb on + strand, within BBR_RS15275at 1201.178 kb on + strand, within BBR_RS15275at 1201.205 kb on - strand, within BBR_RS15275at 1201.285 kb on + strand, within BBR_RS15275at 1201.317 kb on - strand, within BBR_RS15275at 1201.317 kb on - strand, within BBR_RS15275at 1201.333 kb on + strand, within BBR_RS15275at 1201.371 kb on - strand, within BBR_RS15275at 1201.414 kb on - strand, within BBR_RS15275at 1201.441 kb on + strand, within BBR_RS15275at 1201.446 kb on + strand, within BBR_RS15275at 1201.461 kb on - strand, within BBR_RS15275at 1201.461 kb on - strand, within BBR_RS15275at 1201.517 kb on + strand, within BBR_RS15275at 1201.519 kb on + strand, within BBR_RS15275at 1201.519 kb on + strand, within BBR_RS15275at 1201.535 kb on + strand, within BBR_RS15275at 1201.541 kb on - strand, within BBR_RS15275at 1201.543 kb on - strand, within BBR_RS15275at 1201.602 kb on + strand, within BBR_RS15275at 1201.611 kb on + strand, within BBR_RS15275at 1201.623 kb on - strand, within BBR_RS15275at 1201.756 kb on - strandat 1201.821 kb on + strandat 1201.844 kb on + strandat 1201.875 kb on - strandat 1202.016 kb on + strandat 1202.035 kb on + strandat 1202.045 kb on + strandat 1202.047 kb on + strandat 1202.047 kb on + strandat 1202.052 kb on + strandat 1202.052 kb on + strandat 1202.060 kb on - strand, within BBR_RS15280at 1202.080 kb on - strand, within BBR_RS15280at 1202.080 kb on - strand, within BBR_RS15280at 1202.084 kb on + strand, within BBR_RS15280at 1202.084 kb on + strand, within BBR_RS15280at 1202.141 kb on + strand, within BBR_RS15280at 1202.154 kb on - strand, within BBR_RS15280at 1202.197 kb on + strand, within BBR_RS15280at 1202.205 kb on - strand, within BBR_RS15280at 1202.205 kb on - strand, within BBR_RS15280at 1202.214 kb on + strand, within BBR_RS15280at 1202.242 kb on - strand, within BBR_RS15280at 1202.245 kb on + strand, within BBR_RS15280at 1202.253 kb on - strand, within BBR_RS15280at 1202.297 kb on - strand, within BBR_RS15280at 1202.320 kb on - strand, within BBR_RS15280at 1202.383 kb on + strand, within BBR_RS15280at 1202.386 kb on + strand, within BBR_RS15280at 1202.410 kb on + strand, within BBR_RS15280at 1202.424 kb on + strandat 1202.550 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Recovery broth with Isovaleric 75 mM
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1,201,109 + BBR_RS15275 0.58 -0.2
1,201,109 + BBR_RS15275 0.58 +0.8
1,201,126 + BBR_RS15275 0.59 +0.3
1,201,126 + BBR_RS15275 0.59 +1.3
1,201,174 + BBR_RS15275 0.62 -1.2
1,201,178 + BBR_RS15275 0.62 -1.8
1,201,205 - BBR_RS15275 0.63 +0.1
1,201,285 + BBR_RS15275 0.68 +0.2
1,201,317 - BBR_RS15275 0.69 -0.1
1,201,317 - BBR_RS15275 0.69 -0.4
1,201,333 + BBR_RS15275 0.70 -0.6
1,201,371 - BBR_RS15275 0.72 -0.0
1,201,414 - BBR_RS15275 0.74 +0.3
1,201,441 + BBR_RS15275 0.76 +1.5
1,201,446 + BBR_RS15275 0.76 -0.4
1,201,461 - BBR_RS15275 0.77 +0.3
1,201,461 - BBR_RS15275 0.77 +0.4
1,201,517 + BBR_RS15275 0.80 +0.2
1,201,519 + BBR_RS15275 0.80 -0.7
1,201,519 + BBR_RS15275 0.80 -0.4
1,201,535 + BBR_RS15275 0.81 +0.2
1,201,541 - BBR_RS15275 0.81 -0.4
1,201,543 - BBR_RS15275 0.81 +0.0
1,201,602 + BBR_RS15275 0.84 +0.2
1,201,611 + BBR_RS15275 0.85 -0.3
1,201,623 - BBR_RS15275 0.85 -0.3
1,201,756 - +0.8
1,201,821 + -1.9
1,201,844 + +0.8
1,201,875 - +0.5
1,202,016 + -0.2
1,202,035 + -2.1
1,202,045 + +0.5
1,202,047 + +0.3
1,202,047 + +0.4
1,202,052 + +0.2
1,202,052 + -0.1
1,202,060 - BBR_RS15280 0.12 -0.3
1,202,080 - BBR_RS15280 0.16 -0.6
1,202,080 - BBR_RS15280 0.16 +0.1
1,202,084 + BBR_RS15280 0.17 +0.2
1,202,084 + BBR_RS15280 0.17 +0.9
1,202,141 + BBR_RS15280 0.29 +0.9
1,202,154 - BBR_RS15280 0.32 +0.2
1,202,197 + BBR_RS15280 0.41 +0.2
1,202,205 - BBR_RS15280 0.43 -0.5
1,202,205 - BBR_RS15280 0.43 +0.1
1,202,214 + BBR_RS15280 0.45 +1.2
1,202,242 - BBR_RS15280 0.51 +0.0
1,202,245 + BBR_RS15280 0.51 -0.1
1,202,253 - BBR_RS15280 0.53 +0.1
1,202,297 - BBR_RS15280 0.63 +1.1
1,202,320 - BBR_RS15280 0.68 +1.1
1,202,383 + BBR_RS15280 0.81 +0.3
1,202,386 + BBR_RS15280 0.82 -0.1
1,202,410 + BBR_RS15280 0.87 -0.4
1,202,424 + -0.4
1,202,550 + +0.3

Or see this region's nucleotide sequence