Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS15190

Experiment: Recovery broth with Isovaleric 75 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBBR_RS15185 and BBR_RS15190 are separated by 15 nucleotidesBBR_RS15190 and BBR_RS15195 overlap by 1 nucleotides BBR_RS15185: BBR_RS15185 - NAD(P) transhydrogenase subunit alpha, at 1,175,313 to 1,176,476 _RS15185 BBR_RS15190: BBR_RS15190 - NAD(P) transhydrogenase subunit alpha, at 1,176,492 to 1,176,797 _RS15190 BBR_RS15195: BBR_RS15195 - NAD(P) transhydrogenase subunit beta, at 1,176,797 to 1,178,221 _RS15195 Position (kb) 1176 1177Strain fitness (log2 ratio) -1 0 1 2 3at 1175.523 kb on + strand, within BBR_RS15185at 1175.579 kb on + strand, within BBR_RS15185at 1175.585 kb on + strand, within BBR_RS15185at 1175.585 kb on + strand, within BBR_RS15185at 1175.598 kb on - strand, within BBR_RS15185at 1175.604 kb on - strand, within BBR_RS15185at 1175.623 kb on + strand, within BBR_RS15185at 1175.636 kb on + strand, within BBR_RS15185at 1175.660 kb on + strand, within BBR_RS15185at 1175.660 kb on + strand, within BBR_RS15185at 1175.677 kb on - strand, within BBR_RS15185at 1175.724 kb on + strand, within BBR_RS15185at 1175.749 kb on - strand, within BBR_RS15185at 1175.813 kb on - strand, within BBR_RS15185at 1175.838 kb on + strand, within BBR_RS15185at 1175.845 kb on - strand, within BBR_RS15185at 1175.850 kb on - strand, within BBR_RS15185at 1175.917 kb on + strand, within BBR_RS15185at 1175.917 kb on - strand, within BBR_RS15185at 1176.008 kb on + strand, within BBR_RS15185at 1176.011 kb on - strand, within BBR_RS15185at 1176.026 kb on - strand, within BBR_RS15185at 1176.030 kb on + strand, within BBR_RS15185at 1176.033 kb on - strand, within BBR_RS15185at 1176.037 kb on + strand, within BBR_RS15185at 1176.037 kb on + strand, within BBR_RS15185at 1176.040 kb on + strand, within BBR_RS15185at 1176.045 kb on - strand, within BBR_RS15185at 1176.117 kb on + strand, within BBR_RS15185at 1176.132 kb on + strand, within BBR_RS15185at 1176.138 kb on + strand, within BBR_RS15185at 1176.138 kb on + strand, within BBR_RS15185at 1176.146 kb on - strand, within BBR_RS15185at 1176.148 kb on + strand, within BBR_RS15185at 1176.151 kb on - strand, within BBR_RS15185at 1176.173 kb on - strand, within BBR_RS15185at 1176.270 kb on - strand, within BBR_RS15185at 1176.270 kb on - strand, within BBR_RS15185at 1176.272 kb on + strand, within BBR_RS15185at 1176.302 kb on + strand, within BBR_RS15185at 1176.356 kb on + strand, within BBR_RS15185at 1176.379 kb on + strandat 1176.387 kb on - strandat 1176.434 kb on + strandat 1176.462 kb on - strandat 1176.507 kb on + strandat 1176.516 kb on + strandat 1176.519 kb on - strandat 1176.563 kb on + strand, within BBR_RS15190at 1176.564 kb on + strand, within BBR_RS15190at 1176.572 kb on - strand, within BBR_RS15190at 1176.583 kb on + strand, within BBR_RS15190at 1176.583 kb on - strand, within BBR_RS15190at 1176.584 kb on - strand, within BBR_RS15190at 1176.585 kb on + strand, within BBR_RS15190at 1176.634 kb on + strand, within BBR_RS15190at 1176.698 kb on + strand, within BBR_RS15190at 1176.734 kb on + strand, within BBR_RS15190at 1176.740 kb on + strand, within BBR_RS15190at 1176.794 kb on + strandat 1176.794 kb on + strandat 1176.836 kb on - strandat 1176.917 kb on + strandat 1176.940 kb on + strand, within BBR_RS15195at 1176.940 kb on + strand, within BBR_RS15195at 1176.947 kb on + strand, within BBR_RS15195at 1176.995 kb on - strand, within BBR_RS15195at 1177.066 kb on + strand, within BBR_RS15195at 1177.100 kb on + strand, within BBR_RS15195at 1177.102 kb on + strand, within BBR_RS15195at 1177.108 kb on - strand, within BBR_RS15195at 1177.110 kb on - strand, within BBR_RS15195at 1177.110 kb on - strand, within BBR_RS15195at 1177.139 kb on + strand, within BBR_RS15195at 1177.199 kb on + strand, within BBR_RS15195at 1177.219 kb on - strand, within BBR_RS15195at 1177.291 kb on - strand, within BBR_RS15195at 1177.297 kb on + strand, within BBR_RS15195at 1177.297 kb on + strand, within BBR_RS15195at 1177.305 kb on - strand, within BBR_RS15195at 1177.305 kb on - strand, within BBR_RS15195at 1177.305 kb on - strand, within BBR_RS15195at 1177.341 kb on - strand, within BBR_RS15195at 1177.349 kb on + strand, within BBR_RS15195at 1177.389 kb on - strand, within BBR_RS15195at 1177.391 kb on + strand, within BBR_RS15195at 1177.399 kb on - strand, within BBR_RS15195at 1177.399 kb on - strand, within BBR_RS15195at 1177.412 kb on - strand, within BBR_RS15195at 1177.414 kb on + strand, within BBR_RS15195at 1177.421 kb on + strand, within BBR_RS15195at 1177.422 kb on - strand, within BBR_RS15195at 1177.422 kb on - strand, within BBR_RS15195at 1177.471 kb on - strand, within BBR_RS15195at 1177.483 kb on + strand, within BBR_RS15195at 1177.488 kb on + strand, within BBR_RS15195at 1177.491 kb on - strand, within BBR_RS15195at 1177.496 kb on - strand, within BBR_RS15195at 1177.499 kb on + strand, within BBR_RS15195at 1177.499 kb on + strand, within BBR_RS15195at 1177.517 kb on - strand, within BBR_RS15195at 1177.530 kb on + strand, within BBR_RS15195at 1177.535 kb on + strand, within BBR_RS15195at 1177.535 kb on + strand, within BBR_RS15195at 1177.540 kb on - strand, within BBR_RS15195at 1177.558 kb on + strand, within BBR_RS15195at 1177.572 kb on + strand, within BBR_RS15195at 1177.574 kb on - strand, within BBR_RS15195at 1177.580 kb on - strand, within BBR_RS15195at 1177.613 kb on + strand, within BBR_RS15195at 1177.639 kb on - strand, within BBR_RS15195at 1177.689 kb on + strand, within BBR_RS15195at 1177.773 kb on - strand, within BBR_RS15195at 1177.791 kb on - strand, within BBR_RS15195

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Per-strain Table

Position Strand Gene LocusTag Fraction Recovery broth with Isovaleric 75 mM
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1,175,523 + BBR_RS15185 0.18 +0.4
1,175,579 + BBR_RS15185 0.23 -1.2
1,175,585 + BBR_RS15185 0.23 +0.4
1,175,585 + BBR_RS15185 0.23 +0.2
1,175,598 - BBR_RS15185 0.24 +0.6
1,175,604 - BBR_RS15185 0.25 +0.4
1,175,623 + BBR_RS15185 0.27 -0.7
1,175,636 + BBR_RS15185 0.28 +0.6
1,175,660 + BBR_RS15185 0.30 +0.4
1,175,660 + BBR_RS15185 0.30 -0.1
1,175,677 - BBR_RS15185 0.31 +0.3
1,175,724 + BBR_RS15185 0.35 -0.4
1,175,749 - BBR_RS15185 0.37 -0.8
1,175,813 - BBR_RS15185 0.43 +0.0
1,175,838 + BBR_RS15185 0.45 -0.4
1,175,845 - BBR_RS15185 0.46 -0.9
1,175,850 - BBR_RS15185 0.46 -0.3
1,175,917 + BBR_RS15185 0.52 -0.4
1,175,917 - BBR_RS15185 0.52 +0.0
1,176,008 + BBR_RS15185 0.60 +0.5
1,176,011 - BBR_RS15185 0.60 +0.3
1,176,026 - BBR_RS15185 0.61 -0.1
1,176,030 + BBR_RS15185 0.62 -0.2
1,176,033 - BBR_RS15185 0.62 +0.6
1,176,037 + BBR_RS15185 0.62 +0.4
1,176,037 + BBR_RS15185 0.62 -0.1
1,176,040 + BBR_RS15185 0.62 +0.5
1,176,045 - BBR_RS15185 0.63 -0.1
1,176,117 + BBR_RS15185 0.69 +0.5
1,176,132 + BBR_RS15185 0.70 -0.2
1,176,138 + BBR_RS15185 0.71 +0.7
1,176,138 + BBR_RS15185 0.71 -0.9
1,176,146 - BBR_RS15185 0.72 -0.2
1,176,148 + BBR_RS15185 0.72 -0.0
1,176,151 - BBR_RS15185 0.72 +0.8
1,176,173 - BBR_RS15185 0.74 +0.3
1,176,270 - BBR_RS15185 0.82 +0.6
1,176,270 - BBR_RS15185 0.82 +0.1
1,176,272 + BBR_RS15185 0.82 -0.8
1,176,302 + BBR_RS15185 0.85 -0.3
1,176,356 + BBR_RS15185 0.90 +0.1
1,176,379 + +0.3
1,176,387 - +0.3
1,176,434 + -0.2
1,176,462 - +0.3
1,176,507 + +0.0
1,176,516 + +0.1
1,176,519 - +1.1
1,176,563 + BBR_RS15190 0.23 +0.4
1,176,564 + BBR_RS15190 0.24 +0.6
1,176,572 - BBR_RS15190 0.26 -1.4
1,176,583 + BBR_RS15190 0.30 +0.8
1,176,583 - BBR_RS15190 0.30 +0.9
1,176,584 - BBR_RS15190 0.30 +0.4
1,176,585 + BBR_RS15190 0.30 +1.4
1,176,634 + BBR_RS15190 0.46 -0.1
1,176,698 + BBR_RS15190 0.67 +0.4
1,176,734 + BBR_RS15190 0.79 +0.9
1,176,740 + BBR_RS15190 0.81 -0.6
1,176,794 + -0.2
1,176,794 + -1.6
1,176,836 - -1.4
1,176,917 + -0.1
1,176,940 + BBR_RS15195 0.10 -0.5
1,176,940 + BBR_RS15195 0.10 +0.7
1,176,947 + BBR_RS15195 0.11 +0.2
1,176,995 - BBR_RS15195 0.14 -0.3
1,177,066 + BBR_RS15195 0.19 -0.4
1,177,100 + BBR_RS15195 0.21 -0.8
1,177,102 + BBR_RS15195 0.21 -0.3
1,177,108 - BBR_RS15195 0.22 +2.8
1,177,110 - BBR_RS15195 0.22 -1.3
1,177,110 - BBR_RS15195 0.22 -0.8
1,177,139 + BBR_RS15195 0.24 +0.8
1,177,199 + BBR_RS15195 0.28 -0.1
1,177,219 - BBR_RS15195 0.30 +0.6
1,177,291 - BBR_RS15195 0.35 +1.6
1,177,297 + BBR_RS15195 0.35 -0.4
1,177,297 + BBR_RS15195 0.35 -0.2
1,177,305 - BBR_RS15195 0.36 -1.0
1,177,305 - BBR_RS15195 0.36 +0.1
1,177,305 - BBR_RS15195 0.36 +0.8
1,177,341 - BBR_RS15195 0.38 +0.1
1,177,349 + BBR_RS15195 0.39 +0.0
1,177,389 - BBR_RS15195 0.42 -0.4
1,177,391 + BBR_RS15195 0.42 -0.3
1,177,399 - BBR_RS15195 0.42 -0.5
1,177,399 - BBR_RS15195 0.42 +0.3
1,177,412 - BBR_RS15195 0.43 +1.3
1,177,414 + BBR_RS15195 0.43 +0.1
1,177,421 + BBR_RS15195 0.44 -0.8
1,177,422 - BBR_RS15195 0.44 -1.2
1,177,422 - BBR_RS15195 0.44 -0.1
1,177,471 - BBR_RS15195 0.47 -0.1
1,177,483 + BBR_RS15195 0.48 +0.7
1,177,488 + BBR_RS15195 0.48 -0.2
1,177,491 - BBR_RS15195 0.49 +0.3
1,177,496 - BBR_RS15195 0.49 -0.9
1,177,499 + BBR_RS15195 0.49 +0.1
1,177,499 + BBR_RS15195 0.49 -0.1
1,177,517 - BBR_RS15195 0.51 +0.1
1,177,530 + BBR_RS15195 0.51 -0.4
1,177,535 + BBR_RS15195 0.52 +0.1
1,177,535 + BBR_RS15195 0.52 +0.4
1,177,540 - BBR_RS15195 0.52 +0.3
1,177,558 + BBR_RS15195 0.53 -1.2
1,177,572 + BBR_RS15195 0.54 +0.2
1,177,574 - BBR_RS15195 0.55 +0.4
1,177,580 - BBR_RS15195 0.55 +0.5
1,177,613 + BBR_RS15195 0.57 +1.6
1,177,639 - BBR_RS15195 0.59 -0.4
1,177,689 + BBR_RS15195 0.63 +0.5
1,177,773 - BBR_RS15195 0.68 +0.3
1,177,791 - BBR_RS15195 0.70 +0.3

Or see this region's nucleotide sequence