Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS13855

Experiment: Recovery broth with Isovaleric 75 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBBR_RS13850 and BBR_RS13855 overlap by 1 nucleotidesBBR_RS13855 and BBR_RS13860 are separated by 56 nucleotidesBBR_RS13860 and BBR_RS13865 are separated by 36 nucleotides BBR_RS13850: BBR_RS13850 - ABC transporter permease, at 886,465 to 887,064 _RS13850 BBR_RS13855: BBR_RS13855 - ABC transporter ATP-binding protein, at 887,064 to 888,536 _RS13855 BBR_RS13860: BBR_RS13860 - energy-coupling factor transporter transmembrane protein EcfT, at 888,593 to 889,471 _RS13860 BBR_RS13865: BBR_RS13865 - RNA methyltransferase, at 889,508 to 890,386 _RS13865 Position (kb) 887 888 889Strain fitness (log2 ratio) -1 0 1 2at 886.090 kb on + strandat 886.123 kb on + strandat 886.275 kb on - strandat 886.275 kb on - strandat 886.283 kb on - strandat 886.290 kb on - strandat 886.298 kb on - strandat 886.332 kb on - strandat 886.342 kb on + strandat 886.359 kb on - strandat 886.359 kb on - strandat 886.406 kb on + strandat 886.427 kb on + strandat 886.427 kb on + strandat 886.461 kb on + strandat 886.561 kb on + strand, within BBR_RS13850at 886.572 kb on + strand, within BBR_RS13850at 886.573 kb on + strand, within BBR_RS13850at 886.590 kb on + strand, within BBR_RS13850at 886.688 kb on + strand, within BBR_RS13850at 886.691 kb on - strand, within BBR_RS13850at 886.722 kb on + strand, within BBR_RS13850at 886.751 kb on - strand, within BBR_RS13850at 886.798 kb on + strand, within BBR_RS13850at 886.844 kb on + strand, within BBR_RS13850at 886.844 kb on + strand, within BBR_RS13850at 886.844 kb on + strand, within BBR_RS13850at 886.885 kb on + strand, within BBR_RS13850at 886.890 kb on + strand, within BBR_RS13850at 886.954 kb on - strand, within BBR_RS13850at 887.066 kb on - strandat 887.069 kb on + strandat 887.166 kb on + strandat 887.173 kb on + strandat 887.278 kb on + strand, within BBR_RS13855at 887.312 kb on - strand, within BBR_RS13855at 887.312 kb on - strand, within BBR_RS13855at 887.336 kb on - strand, within BBR_RS13855at 887.379 kb on + strand, within BBR_RS13855at 887.474 kb on + strand, within BBR_RS13855at 887.545 kb on + strand, within BBR_RS13855at 887.646 kb on - strand, within BBR_RS13855at 887.690 kb on - strand, within BBR_RS13855at 887.767 kb on - strand, within BBR_RS13855at 887.856 kb on + strand, within BBR_RS13855at 887.899 kb on + strand, within BBR_RS13855at 887.907 kb on - strand, within BBR_RS13855at 887.911 kb on + strand, within BBR_RS13855at 887.972 kb on - strand, within BBR_RS13855at 887.973 kb on + strand, within BBR_RS13855at 887.975 kb on + strand, within BBR_RS13855at 887.975 kb on + strand, within BBR_RS13855at 888.008 kb on + strand, within BBR_RS13855at 888.023 kb on + strand, within BBR_RS13855at 888.069 kb on - strand, within BBR_RS13855at 888.090 kb on - strand, within BBR_RS13855at 888.116 kb on + strand, within BBR_RS13855at 888.137 kb on - strand, within BBR_RS13855at 888.163 kb on + strand, within BBR_RS13855at 888.226 kb on + strand, within BBR_RS13855at 888.267 kb on + strand, within BBR_RS13855at 888.310 kb on - strand, within BBR_RS13855at 888.320 kb on + strand, within BBR_RS13855at 888.328 kb on - strand, within BBR_RS13855at 888.339 kb on + strand, within BBR_RS13855at 888.342 kb on - strand, within BBR_RS13855at 888.342 kb on - strand, within BBR_RS13855at 888.354 kb on + strand, within BBR_RS13855at 888.354 kb on + strand, within BBR_RS13855at 888.360 kb on + strand, within BBR_RS13855at 888.385 kb on - strand, within BBR_RS13855at 888.446 kb on + strandat 888.454 kb on - strandat 888.456 kb on - strandat 888.473 kb on + strandat 888.485 kb on + strandat 888.493 kb on - strandat 888.538 kb on - strandat 888.560 kb on + strandat 888.568 kb on - strandat 888.666 kb on + strandat 888.691 kb on + strand, within BBR_RS13860at 888.691 kb on + strand, within BBR_RS13860at 888.691 kb on + strand, within BBR_RS13860at 888.699 kb on - strand, within BBR_RS13860at 888.758 kb on + strand, within BBR_RS13860at 888.766 kb on - strand, within BBR_RS13860at 888.786 kb on + strand, within BBR_RS13860at 888.786 kb on + strand, within BBR_RS13860at 888.843 kb on - strand, within BBR_RS13860at 888.856 kb on + strand, within BBR_RS13860at 888.856 kb on + strand, within BBR_RS13860at 888.856 kb on + strand, within BBR_RS13860at 888.864 kb on - strand, within BBR_RS13860at 888.864 kb on - strand, within BBR_RS13860at 888.864 kb on - strand, within BBR_RS13860at 888.887 kb on + strand, within BBR_RS13860at 888.933 kb on - strand, within BBR_RS13860at 888.984 kb on - strand, within BBR_RS13860at 888.995 kb on - strand, within BBR_RS13860at 889.056 kb on + strand, within BBR_RS13860at 889.101 kb on - strand, within BBR_RS13860at 889.119 kb on + strand, within BBR_RS13860at 889.153 kb on + strand, within BBR_RS13860at 889.182 kb on + strand, within BBR_RS13860at 889.190 kb on - strand, within BBR_RS13860at 889.190 kb on - strand, within BBR_RS13860at 889.192 kb on + strand, within BBR_RS13860at 889.217 kb on - strand, within BBR_RS13860at 889.219 kb on + strand, within BBR_RS13860at 889.265 kb on + strand, within BBR_RS13860at 889.311 kb on + strand, within BBR_RS13860at 889.381 kb on + strand, within BBR_RS13860at 889.381 kb on - strand, within BBR_RS13860at 889.389 kb on + strandat 889.389 kb on - strandat 889.389 kb on - strandat 889.406 kb on - strandat 889.416 kb on + strandat 889.416 kb on + strandat 889.416 kb on + strandat 889.424 kb on - strandat 889.497 kb on + strandat 889.510 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Recovery broth with Isovaleric 75 mM
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886,090 + +0.3
886,123 + -0.3
886,275 - +0.0
886,275 - +0.1
886,283 - +0.0
886,290 - -1.0
886,298 - +0.2
886,332 - -1.5
886,342 + -0.6
886,359 - -0.2
886,359 - -0.1
886,406 + +0.1
886,427 + +0.2
886,427 + +0.4
886,461 + -0.4
886,561 + BBR_RS13850 0.16 -0.3
886,572 + BBR_RS13850 0.18 -1.0
886,573 + BBR_RS13850 0.18 +0.2
886,590 + BBR_RS13850 0.21 -0.5
886,688 + BBR_RS13850 0.37 -0.4
886,691 - BBR_RS13850 0.38 +0.1
886,722 + BBR_RS13850 0.43 +0.4
886,751 - BBR_RS13850 0.48 -0.1
886,798 + BBR_RS13850 0.56 +0.5
886,844 + BBR_RS13850 0.63 +0.4
886,844 + BBR_RS13850 0.63 -0.5
886,844 + BBR_RS13850 0.63 +0.4
886,885 + BBR_RS13850 0.70 +1.8
886,890 + BBR_RS13850 0.71 +0.3
886,954 - BBR_RS13850 0.81 +1.1
887,066 - -0.3
887,069 + -0.6
887,166 + -0.4
887,173 + +0.3
887,278 + BBR_RS13855 0.15 +0.6
887,312 - BBR_RS13855 0.17 +1.2
887,312 - BBR_RS13855 0.17 -0.4
887,336 - BBR_RS13855 0.18 -0.8
887,379 + BBR_RS13855 0.21 +0.3
887,474 + BBR_RS13855 0.28 +1.0
887,545 + BBR_RS13855 0.33 -0.2
887,646 - BBR_RS13855 0.40 +0.5
887,690 - BBR_RS13855 0.42 +1.7
887,767 - BBR_RS13855 0.48 +0.0
887,856 + BBR_RS13855 0.54 -0.0
887,899 + BBR_RS13855 0.57 +1.3
887,907 - BBR_RS13855 0.57 -0.1
887,911 + BBR_RS13855 0.58 +0.1
887,972 - BBR_RS13855 0.62 -0.4
887,973 + BBR_RS13855 0.62 +1.3
887,975 + BBR_RS13855 0.62 +0.4
887,975 + BBR_RS13855 0.62 -0.5
888,008 + BBR_RS13855 0.64 +0.1
888,023 + BBR_RS13855 0.65 -0.3
888,069 - BBR_RS13855 0.68 +0.8
888,090 - BBR_RS13855 0.70 +1.0
888,116 + BBR_RS13855 0.71 -0.5
888,137 - BBR_RS13855 0.73 +0.3
888,163 + BBR_RS13855 0.75 -1.1
888,226 + BBR_RS13855 0.79 +0.5
888,267 + BBR_RS13855 0.82 -0.7
888,310 - BBR_RS13855 0.85 +0.3
888,320 + BBR_RS13855 0.85 +0.4
888,328 - BBR_RS13855 0.86 -0.1
888,339 + BBR_RS13855 0.87 +0.8
888,342 - BBR_RS13855 0.87 -0.5
888,342 - BBR_RS13855 0.87 +0.3
888,354 + BBR_RS13855 0.88 +0.1
888,354 + BBR_RS13855 0.88 -0.8
888,360 + BBR_RS13855 0.88 +0.4
888,385 - BBR_RS13855 0.90 -0.3
888,446 + -0.0
888,454 - +0.6
888,456 - +0.1
888,473 + -0.2
888,485 + +1.5
888,493 - -0.9
888,538 - +0.5
888,560 + +0.8
888,568 - +0.4
888,666 + +1.0
888,691 + BBR_RS13860 0.11 +0.4
888,691 + BBR_RS13860 0.11 -0.3
888,691 + BBR_RS13860 0.11 -0.1
888,699 - BBR_RS13860 0.12 +0.0
888,758 + BBR_RS13860 0.19 +0.3
888,766 - BBR_RS13860 0.20 +0.5
888,786 + BBR_RS13860 0.22 +0.6
888,786 + BBR_RS13860 0.22 +0.3
888,843 - BBR_RS13860 0.28 -0.0
888,856 + BBR_RS13860 0.30 +0.7
888,856 + BBR_RS13860 0.30 +0.5
888,856 + BBR_RS13860 0.30 -0.1
888,864 - BBR_RS13860 0.31 +0.3
888,864 - BBR_RS13860 0.31 +0.4
888,864 - BBR_RS13860 0.31 +1.1
888,887 + BBR_RS13860 0.33 -0.2
888,933 - BBR_RS13860 0.39 +0.1
888,984 - BBR_RS13860 0.44 -1.6
888,995 - BBR_RS13860 0.46 +0.8
889,056 + BBR_RS13860 0.53 -0.1
889,101 - BBR_RS13860 0.58 +0.5
889,119 + BBR_RS13860 0.60 +0.5
889,153 + BBR_RS13860 0.64 +0.7
889,182 + BBR_RS13860 0.67 -0.2
889,190 - BBR_RS13860 0.68 -1.1
889,190 - BBR_RS13860 0.68 +0.5
889,192 + BBR_RS13860 0.68 +0.2
889,217 - BBR_RS13860 0.71 -0.0
889,219 + BBR_RS13860 0.71 +0.7
889,265 + BBR_RS13860 0.76 -0.2
889,311 + BBR_RS13860 0.82 -0.3
889,381 + BBR_RS13860 0.90 -0.1
889,381 - BBR_RS13860 0.90 +0.8
889,389 + +0.1
889,389 - +0.0
889,389 - +0.3
889,406 - +1.0
889,416 + -0.2
889,416 + +0.1
889,416 + +0.2
889,424 - +0.5
889,497 + +0.4
889,510 + -0.2

Or see this region's nucleotide sequence