Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS13195

Experiment: Recovery broth with Isovaleric 75 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBBR_RS13180 and BBR_RS13185 are separated by 48 nucleotidesBBR_RS13185 and BBR_RS13190 overlap by 4 nucleotidesBBR_RS13190 and BBR_RS13195 are separated by 210 nucleotidesBBR_RS13195 and BBR_RS13200 are separated by 26 nucleotidesBBR_RS13200 and BBR_RS13205 are separated by 57 nucleotides BBR_RS13180: BBR_RS13180 - DNA primase, at 733,651 to 735,753 _RS13180 BBR_RS13185: BBR_RS13185 - PIN domain-containing protein, at 735,802 to 736,224 _RS13185 BBR_RS13190: BBR_RS13190 - hypothetical protein, at 736,221 to 736,451 _RS13190 BBR_RS13195: BBR_RS13195 - pyridoxal 5'-phosphate synthase lyase subunit PdxS, at 736,662 to 737,537 _RS13195 BBR_RS13200: BBR_RS13200 - pyridoxal 5'-phosphate synthase glutaminase subunit PdxT, at 737,564 to 738,202 _RS13200 BBR_RS13205: BBR_RS13205 - PLP-dependent aminotransferase family protein, at 738,260 to 739,783 _RS13205 Position (kb) 736 737 738Strain fitness (log2 ratio) -1 0 1at 735.794 kb on - strandat 735.915 kb on - strand, within BBR_RS13185at 735.915 kb on - strand, within BBR_RS13185at 736.005 kb on + strand, within BBR_RS13185at 736.019 kb on + strand, within BBR_RS13185at 736.038 kb on - strand, within BBR_RS13185at 736.048 kb on - strand, within BBR_RS13185at 736.099 kb on - strand, within BBR_RS13185at 736.111 kb on + strand, within BBR_RS13185at 736.135 kb on + strand, within BBR_RS13185at 736.143 kb on + strand, within BBR_RS13185at 736.143 kb on - strand, within BBR_RS13185at 736.160 kb on + strand, within BBR_RS13185at 736.164 kb on - strand, within BBR_RS13185at 736.179 kb on + strand, within BBR_RS13185at 736.225 kb on + strandat 736.587 kb on + strandat 736.587 kb on + strandat 736.587 kb on + strandat 736.595 kb on - strandat 736.598 kb on + strandat 736.600 kb on - strandat 736.632 kb on + strandat 736.638 kb on - strandat 736.640 kb on + strandat 736.647 kb on + strandat 736.788 kb on - strand, within BBR_RS13195at 736.851 kb on + strand, within BBR_RS13195at 736.856 kb on + strand, within BBR_RS13195at 736.864 kb on - strand, within BBR_RS13195at 737.001 kb on - strand, within BBR_RS13195at 737.005 kb on - strand, within BBR_RS13195at 737.049 kb on + strand, within BBR_RS13195at 737.058 kb on - strand, within BBR_RS13195at 737.062 kb on - strand, within BBR_RS13195at 737.088 kb on + strand, within BBR_RS13195at 737.137 kb on - strand, within BBR_RS13195at 737.212 kb on + strand, within BBR_RS13195at 737.233 kb on - strand, within BBR_RS13195at 737.239 kb on - strand, within BBR_RS13195at 737.277 kb on + strand, within BBR_RS13195at 737.298 kb on + strand, within BBR_RS13195at 737.335 kb on - strand, within BBR_RS13195at 737.361 kb on + strand, within BBR_RS13195at 737.370 kb on + strand, within BBR_RS13195at 737.437 kb on + strand, within BBR_RS13195at 737.437 kb on + strand, within BBR_RS13195at 737.445 kb on - strand, within BBR_RS13195at 737.513 kb on + strandat 737.547 kb on + strandat 737.557 kb on + strandat 737.560 kb on - strandat 737.584 kb on - strandat 737.616 kb on - strandat 737.642 kb on - strand, within BBR_RS13200at 737.653 kb on - strand, within BBR_RS13200at 737.830 kb on + strand, within BBR_RS13200at 737.830 kb on + strand, within BBR_RS13200at 737.830 kb on + strand, within BBR_RS13200at 737.830 kb on + strand, within BBR_RS13200at 737.830 kb on + strand, within BBR_RS13200at 737.830 kb on + strand, within BBR_RS13200at 737.838 kb on - strand, within BBR_RS13200at 737.928 kb on + strand, within BBR_RS13200at 737.931 kb on + strand, within BBR_RS13200at 737.948 kb on + strand, within BBR_RS13200at 737.948 kb on + strand, within BBR_RS13200at 737.955 kb on + strand, within BBR_RS13200at 737.955 kb on + strand, within BBR_RS13200at 737.955 kb on - strand, within BBR_RS13200at 737.963 kb on - strand, within BBR_RS13200at 737.963 kb on - strand, within BBR_RS13200at 738.006 kb on + strand, within BBR_RS13200at 738.033 kb on - strand, within BBR_RS13200at 738.035 kb on + strand, within BBR_RS13200at 738.035 kb on + strand, within BBR_RS13200at 738.077 kb on - strand, within BBR_RS13200at 738.091 kb on - strand, within BBR_RS13200at 738.091 kb on - strand, within BBR_RS13200at 738.131 kb on + strand, within BBR_RS13200at 738.223 kb on - strandat 738.223 kb on - strandat 738.226 kb on + strandat 738.255 kb on + strandat 738.278 kb on - strandat 738.288 kb on - strandat 738.288 kb on - strandat 738.293 kb on - strandat 738.296 kb on - strandat 738.312 kb on + strandat 738.312 kb on + strandat 738.381 kb on + strandat 738.401 kb on - strandat 738.409 kb on - strandat 738.422 kb on - strand, within BBR_RS13205at 738.424 kb on - strand, within BBR_RS13205at 738.431 kb on - strand, within BBR_RS13205at 738.517 kb on + strand, within BBR_RS13205at 738.520 kb on - strand, within BBR_RS13205

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Per-strain Table

Position Strand Gene LocusTag Fraction Recovery broth with Isovaleric 75 mM
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735,794 - +0.1
735,915 - BBR_RS13185 0.27 -0.8
735,915 - BBR_RS13185 0.27 -0.1
736,005 + BBR_RS13185 0.48 -0.4
736,019 + BBR_RS13185 0.51 +0.2
736,038 - BBR_RS13185 0.56 +0.6
736,048 - BBR_RS13185 0.58 -0.1
736,099 - BBR_RS13185 0.70 +0.3
736,111 + BBR_RS13185 0.73 +1.0
736,135 + BBR_RS13185 0.79 -0.1
736,143 + BBR_RS13185 0.81 -0.4
736,143 - BBR_RS13185 0.81 +0.5
736,160 + BBR_RS13185 0.85 +0.6
736,164 - BBR_RS13185 0.86 +0.8
736,179 + BBR_RS13185 0.89 +0.3
736,225 + +0.6
736,587 + -0.2
736,587 + +0.4
736,587 + -0.0
736,595 - -0.0
736,598 + -0.7
736,600 - -0.6
736,632 + -0.7
736,638 - +0.9
736,640 + +0.3
736,647 + +0.5
736,788 - BBR_RS13195 0.14 +0.6
736,851 + BBR_RS13195 0.22 +0.1
736,856 + BBR_RS13195 0.22 +0.1
736,864 - BBR_RS13195 0.23 -1.5
737,001 - BBR_RS13195 0.39 +0.1
737,005 - BBR_RS13195 0.39 +0.6
737,049 + BBR_RS13195 0.44 +0.4
737,058 - BBR_RS13195 0.45 +0.6
737,062 - BBR_RS13195 0.46 -0.1
737,088 + BBR_RS13195 0.49 -0.2
737,137 - BBR_RS13195 0.54 +0.2
737,212 + BBR_RS13195 0.63 +0.3
737,233 - BBR_RS13195 0.65 +0.0
737,239 - BBR_RS13195 0.66 +1.0
737,277 + BBR_RS13195 0.70 -0.1
737,298 + BBR_RS13195 0.73 +1.2
737,335 - BBR_RS13195 0.77 +0.5
737,361 + BBR_RS13195 0.80 -0.0
737,370 + BBR_RS13195 0.81 -0.7
737,437 + BBR_RS13195 0.88 +0.3
737,437 + BBR_RS13195 0.88 +0.4
737,445 - BBR_RS13195 0.89 -0.5
737,513 + -0.2
737,547 + +0.4
737,557 + +0.4
737,560 - -0.2
737,584 - -0.4
737,616 - +0.0
737,642 - BBR_RS13200 0.12 +0.8
737,653 - BBR_RS13200 0.14 -0.3
737,830 + BBR_RS13200 0.42 +0.6
737,830 + BBR_RS13200 0.42 -0.7
737,830 + BBR_RS13200 0.42 +1.0
737,830 + BBR_RS13200 0.42 +0.5
737,830 + BBR_RS13200 0.42 -0.7
737,830 + BBR_RS13200 0.42 +0.4
737,838 - BBR_RS13200 0.43 +0.2
737,928 + BBR_RS13200 0.57 +1.5
737,931 + BBR_RS13200 0.57 +0.5
737,948 + BBR_RS13200 0.60 +0.7
737,948 + BBR_RS13200 0.60 +0.1
737,955 + BBR_RS13200 0.61 +0.1
737,955 + BBR_RS13200 0.61 -0.1
737,955 - BBR_RS13200 0.61 -0.7
737,963 - BBR_RS13200 0.62 +0.4
737,963 - BBR_RS13200 0.62 -0.4
738,006 + BBR_RS13200 0.69 +0.0
738,033 - BBR_RS13200 0.73 +0.6
738,035 + BBR_RS13200 0.74 -0.2
738,035 + BBR_RS13200 0.74 +0.1
738,077 - BBR_RS13200 0.80 -0.4
738,091 - BBR_RS13200 0.82 -0.6
738,091 - BBR_RS13200 0.82 -0.7
738,131 + BBR_RS13200 0.89 +0.0
738,223 - -0.1
738,223 - -0.2
738,226 + -0.5
738,255 + -0.6
738,278 - -0.5
738,288 - +0.3
738,288 - -0.9
738,293 - -0.2
738,296 - +0.6
738,312 + -1.0
738,312 + -1.4
738,381 + -0.5
738,401 - -0.4
738,409 - +0.0
738,422 - BBR_RS13205 0.11 +0.1
738,424 - BBR_RS13205 0.11 -0.1
738,431 - BBR_RS13205 0.11 -0.5
738,517 + BBR_RS13205 0.17 -0.1
738,520 - BBR_RS13205 0.17 +0.1

Or see this region's nucleotide sequence