Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS13015

Experiment: Recovery broth with Isovaleric 75 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBBR_RS13010 and BBR_RS13015 are separated by 143 nucleotidesBBR_RS13015 and BBR_RS13020 overlap by 4 nucleotides BBR_RS13010: BBR_RS13010 - phosphoglucosamine mutase, at 691,532 to 692,917 _RS13010 BBR_RS13015: BBR_RS13015 - peptide deformylase, at 693,061 to 693,714 _RS13015 BBR_RS13020: BBR_RS13020 - DNA polymerase III subunit epsilon, at 693,711 to 695,165 _RS13020 Position (kb) 693 694Strain fitness (log2 ratio) -2 -1 0 1at 692.920 kb on - strandat 692.920 kb on - strandat 692.935 kb on - strandat 692.935 kb on - strandat 692.941 kb on + strandat 692.948 kb on + strandat 692.949 kb on - strandat 692.961 kb on + strandat 692.969 kb on + strandat 692.971 kb on + strandat 692.983 kb on + strandat 692.984 kb on + strandat 692.998 kb on + strandat 693.028 kb on + strandat 693.144 kb on - strand, within BBR_RS13015at 693.144 kb on - strand, within BBR_RS13015at 693.252 kb on - strand, within BBR_RS13015at 693.257 kb on + strand, within BBR_RS13015at 693.280 kb on - strand, within BBR_RS13015at 693.284 kb on - strand, within BBR_RS13015at 693.322 kb on + strand, within BBR_RS13015at 693.330 kb on - strand, within BBR_RS13015at 693.330 kb on - strand, within BBR_RS13015at 693.351 kb on - strand, within BBR_RS13015at 693.395 kb on + strand, within BBR_RS13015at 693.402 kb on + strand, within BBR_RS13015at 693.452 kb on + strand, within BBR_RS13015at 693.462 kb on + strand, within BBR_RS13015at 693.469 kb on - strand, within BBR_RS13015at 693.470 kb on - strand, within BBR_RS13015at 693.470 kb on - strand, within BBR_RS13015at 693.511 kb on + strand, within BBR_RS13015at 693.534 kb on - strand, within BBR_RS13015at 693.551 kb on + strand, within BBR_RS13015at 693.556 kb on + strand, within BBR_RS13015at 693.570 kb on + strand, within BBR_RS13015at 693.570 kb on + strand, within BBR_RS13015at 693.578 kb on + strand, within BBR_RS13015at 693.578 kb on + strand, within BBR_RS13015at 693.583 kb on - strand, within BBR_RS13015at 693.662 kb on - strandat 693.662 kb on - strandat 693.727 kb on + strandat 693.739 kb on + strandat 693.744 kb on + strandat 693.775 kb on + strandat 693.793 kb on + strandat 693.819 kb on - strandat 693.819 kb on - strandat 693.820 kb on + strandat 693.820 kb on + strandat 693.828 kb on - strandat 693.828 kb on - strandat 693.846 kb on - strandat 693.852 kb on + strandat 693.899 kb on + strand, within BBR_RS13020at 693.907 kb on - strand, within BBR_RS13020at 693.927 kb on - strand, within BBR_RS13020at 693.949 kb on - strand, within BBR_RS13020at 694.007 kb on + strand, within BBR_RS13020at 694.007 kb on + strand, within BBR_RS13020at 694.015 kb on - strand, within BBR_RS13020at 694.015 kb on - strand, within BBR_RS13020at 694.029 kb on + strand, within BBR_RS13020at 694.037 kb on + strand, within BBR_RS13020at 694.037 kb on + strand, within BBR_RS13020at 694.087 kb on + strand, within BBR_RS13020at 694.095 kb on - strand, within BBR_RS13020at 694.096 kb on + strand, within BBR_RS13020at 694.129 kb on - strand, within BBR_RS13020at 694.155 kb on + strand, within BBR_RS13020at 694.167 kb on + strand, within BBR_RS13020at 694.167 kb on + strand, within BBR_RS13020at 694.186 kb on - strand, within BBR_RS13020at 694.186 kb on - strand, within BBR_RS13020at 694.207 kb on + strand, within BBR_RS13020at 694.207 kb on + strand, within BBR_RS13020at 694.209 kb on + strand, within BBR_RS13020at 694.230 kb on + strand, within BBR_RS13020at 694.230 kb on + strand, within BBR_RS13020at 694.230 kb on + strand, within BBR_RS13020at 694.230 kb on + strand, within BBR_RS13020at 694.230 kb on + strand, within BBR_RS13020at 694.235 kb on + strand, within BBR_RS13020at 694.238 kb on - strand, within BBR_RS13020at 694.238 kb on - strand, within BBR_RS13020at 694.238 kb on - strand, within BBR_RS13020at 694.274 kb on + strand, within BBR_RS13020at 694.274 kb on + strand, within BBR_RS13020at 694.274 kb on + strand, within BBR_RS13020at 694.285 kb on + strand, within BBR_RS13020at 694.288 kb on - strand, within BBR_RS13020at 694.305 kb on + strand, within BBR_RS13020at 694.309 kb on + strand, within BBR_RS13020at 694.324 kb on + strand, within BBR_RS13020at 694.339 kb on - strand, within BBR_RS13020at 694.339 kb on - strand, within BBR_RS13020at 694.350 kb on + strand, within BBR_RS13020at 694.352 kb on + strand, within BBR_RS13020at 694.375 kb on + strand, within BBR_RS13020at 694.390 kb on + strand, within BBR_RS13020at 694.455 kb on - strand, within BBR_RS13020at 694.470 kb on - strand, within BBR_RS13020at 694.577 kb on - strand, within BBR_RS13020at 694.600 kb on + strand, within BBR_RS13020at 694.603 kb on - strand, within BBR_RS13020at 694.618 kb on + strand, within BBR_RS13020at 694.626 kb on - strand, within BBR_RS13020at 694.653 kb on - strand, within BBR_RS13020at 694.653 kb on - strand, within BBR_RS13020at 694.653 kb on - strand, within BBR_RS13020

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Per-strain Table

Position Strand Gene LocusTag Fraction Recovery broth with Isovaleric 75 mM
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692,920 - +0.4
692,920 - +0.3
692,935 - +0.4
692,935 - +0.3
692,941 + -0.8
692,948 + +0.1
692,949 - +0.6
692,961 + -2.2
692,969 + +0.6
692,971 + +0.4
692,983 + +0.3
692,984 + -1.1
692,998 + +0.6
693,028 + +0.2
693,144 - BBR_RS13015 0.13 +0.6
693,144 - BBR_RS13015 0.13 -0.7
693,252 - BBR_RS13015 0.29 -0.1
693,257 + BBR_RS13015 0.30 +0.4
693,280 - BBR_RS13015 0.33 +0.7
693,284 - BBR_RS13015 0.34 +0.2
693,322 + BBR_RS13015 0.40 +0.3
693,330 - BBR_RS13015 0.41 +0.5
693,330 - BBR_RS13015 0.41 +0.9
693,351 - BBR_RS13015 0.44 +1.3
693,395 + BBR_RS13015 0.51 +0.1
693,402 + BBR_RS13015 0.52 +0.0
693,452 + BBR_RS13015 0.60 -1.1
693,462 + BBR_RS13015 0.61 -0.6
693,469 - BBR_RS13015 0.62 +0.1
693,470 - BBR_RS13015 0.63 +0.4
693,470 - BBR_RS13015 0.63 +0.2
693,511 + BBR_RS13015 0.69 -0.3
693,534 - BBR_RS13015 0.72 +0.6
693,551 + BBR_RS13015 0.75 +0.1
693,556 + BBR_RS13015 0.76 -1.0
693,570 + BBR_RS13015 0.78 -0.1
693,570 + BBR_RS13015 0.78 +0.9
693,578 + BBR_RS13015 0.79 +0.9
693,578 + BBR_RS13015 0.79 -0.5
693,583 - BBR_RS13015 0.80 -0.1
693,662 - -0.4
693,662 - +0.5
693,727 + +1.0
693,739 + -0.5
693,744 + -0.2
693,775 + -0.1
693,793 + +0.4
693,819 - +0.8
693,819 - +0.0
693,820 + -0.1
693,820 + +0.6
693,828 - +0.4
693,828 - +0.5
693,846 - +0.7
693,852 + +0.2
693,899 + BBR_RS13020 0.13 -0.7
693,907 - BBR_RS13020 0.13 -0.7
693,927 - BBR_RS13020 0.15 -0.3
693,949 - BBR_RS13020 0.16 -0.7
694,007 + BBR_RS13020 0.20 +0.2
694,007 + BBR_RS13020 0.20 +0.5
694,015 - BBR_RS13020 0.21 -0.1
694,015 - BBR_RS13020 0.21 -0.7
694,029 + BBR_RS13020 0.22 +0.5
694,037 + BBR_RS13020 0.22 -0.0
694,037 + BBR_RS13020 0.22 +0.1
694,087 + BBR_RS13020 0.26 -1.2
694,095 - BBR_RS13020 0.26 -0.3
694,096 + BBR_RS13020 0.26 +0.9
694,129 - BBR_RS13020 0.29 -0.1
694,155 + BBR_RS13020 0.31 +0.3
694,167 + BBR_RS13020 0.31 +0.2
694,167 + BBR_RS13020 0.31 +0.1
694,186 - BBR_RS13020 0.33 +0.3
694,186 - BBR_RS13020 0.33 +0.4
694,207 + BBR_RS13020 0.34 -0.2
694,207 + BBR_RS13020 0.34 -0.0
694,209 + BBR_RS13020 0.34 +0.6
694,230 + BBR_RS13020 0.36 +0.3
694,230 + BBR_RS13020 0.36 -0.1
694,230 + BBR_RS13020 0.36 -0.4
694,230 + BBR_RS13020 0.36 +0.6
694,230 + BBR_RS13020 0.36 -0.2
694,235 + BBR_RS13020 0.36 +0.1
694,238 - BBR_RS13020 0.36 -1.3
694,238 - BBR_RS13020 0.36 -0.7
694,238 - BBR_RS13020 0.36 -0.4
694,274 + BBR_RS13020 0.39 -0.2
694,274 + BBR_RS13020 0.39 +0.9
694,274 + BBR_RS13020 0.39 -0.2
694,285 + BBR_RS13020 0.39 -0.4
694,288 - BBR_RS13020 0.40 -0.2
694,305 + BBR_RS13020 0.41 +0.5
694,309 + BBR_RS13020 0.41 +0.6
694,324 + BBR_RS13020 0.42 -0.2
694,339 - BBR_RS13020 0.43 +0.9
694,339 - BBR_RS13020 0.43 +0.4
694,350 + BBR_RS13020 0.44 -0.2
694,352 + BBR_RS13020 0.44 +0.2
694,375 + BBR_RS13020 0.46 +0.6
694,390 + BBR_RS13020 0.47 +0.6
694,455 - BBR_RS13020 0.51 +0.8
694,470 - BBR_RS13020 0.52 +0.2
694,577 - BBR_RS13020 0.60 +0.4
694,600 + BBR_RS13020 0.61 +0.2
694,603 - BBR_RS13020 0.61 -0.0
694,618 + BBR_RS13020 0.62 +0.5
694,626 - BBR_RS13020 0.63 +0.2
694,653 - BBR_RS13020 0.65 -0.3
694,653 - BBR_RS13020 0.65 +0.8
694,653 - BBR_RS13020 0.65 -0.3

Or see this region's nucleotide sequence