Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS12770

Experiment: Recovery broth with Isovaleric 75 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBBR_RS12760 and BBR_RS12770 are separated by 70 nucleotidesBBR_RS12770 and BBR_RS12775 are separated by 469 nucleotidesBBR_RS12775 and BBR_RS12780 are separated by 0 nucleotides BBR_RS12760: BBR_RS12760 - hypothetical protein, at 615,670 to 616,906 _RS12760 BBR_RS12770: BBR_RS12770 - hypothetical protein, at 616,977 to 617,183 _RS12770 BBR_RS12775: BBR_RS12775 - hypothetical protein, at 617,653 to 618,066 _RS12775 BBR_RS12780: BBR_RS12780 - hypothetical protein, at 618,067 to 618,603 _RS12780 Position (kb) 616 617 618Strain fitness (log2 ratio) -1 0 1 2at 615.988 kb on - strand, within BBR_RS12760at 616.086 kb on - strand, within BBR_RS12760at 616.087 kb on - strand, within BBR_RS12760at 616.103 kb on - strand, within BBR_RS12760at 616.140 kb on + strand, within BBR_RS12760at 616.140 kb on + strand, within BBR_RS12760at 616.146 kb on + strand, within BBR_RS12760at 616.148 kb on - strand, within BBR_RS12760at 616.148 kb on - strand, within BBR_RS12760at 616.153 kb on + strand, within BBR_RS12760at 616.154 kb on - strand, within BBR_RS12760at 616.154 kb on - strand, within BBR_RS12760at 616.169 kb on - strand, within BBR_RS12760at 616.178 kb on + strand, within BBR_RS12760at 616.187 kb on - strand, within BBR_RS12760at 616.201 kb on + strand, within BBR_RS12760at 616.201 kb on + strand, within BBR_RS12760at 616.202 kb on - strand, within BBR_RS12760at 616.209 kb on - strand, within BBR_RS12760at 616.273 kb on + strand, within BBR_RS12760at 616.304 kb on - strand, within BBR_RS12760at 616.305 kb on + strand, within BBR_RS12760at 616.307 kb on + strand, within BBR_RS12760at 616.338 kb on + strand, within BBR_RS12760at 616.338 kb on + strand, within BBR_RS12760at 616.345 kb on - strand, within BBR_RS12760at 616.379 kb on + strand, within BBR_RS12760at 616.379 kb on + strand, within BBR_RS12760at 616.450 kb on + strand, within BBR_RS12760at 616.536 kb on - strand, within BBR_RS12760at 616.689 kb on + strand, within BBR_RS12760at 616.706 kb on - strand, within BBR_RS12760at 616.721 kb on - strand, within BBR_RS12760at 616.779 kb on - strand, within BBR_RS12760at 616.799 kb on + strandat 616.799 kb on + strandat 616.799 kb on + strandat 616.807 kb on - strandat 616.807 kb on - strandat 616.814 kb on - strandat 616.814 kb on - strandat 616.825 kb on - strandat 616.845 kb on - strandat 616.871 kb on + strandat 616.879 kb on - strandat 616.887 kb on + strandat 616.891 kb on - strandat 616.899 kb on - strandat 617.039 kb on + strand, within BBR_RS12770at 617.053 kb on + strand, within BBR_RS12770at 617.067 kb on + strand, within BBR_RS12770at 617.085 kb on + strand, within BBR_RS12770at 617.093 kb on - strand, within BBR_RS12770at 617.103 kb on - strand, within BBR_RS12770at 617.143 kb on - strand, within BBR_RS12770at 617.177 kb on + strandat 617.215 kb on - strandat 617.215 kb on - strandat 617.221 kb on - strandat 617.261 kb on + strandat 617.263 kb on + strandat 617.294 kb on - strandat 617.343 kb on + strandat 617.345 kb on + strandat 617.345 kb on + strandat 617.345 kb on + strandat 617.351 kb on - strandat 617.353 kb on + strandat 617.353 kb on + strandat 617.415 kb on + strandat 617.439 kb on + strandat 617.454 kb on - strandat 617.462 kb on - strandat 617.529 kb on + strandat 617.555 kb on - strandat 617.560 kb on + strandat 617.601 kb on - strandat 617.627 kb on + strandat 617.627 kb on + strandat 617.627 kb on + strandat 617.627 kb on + strandat 617.627 kb on + strandat 617.672 kb on + strandat 617.680 kb on - strandat 617.735 kb on + strand, within BBR_RS12775at 617.803 kb on - strand, within BBR_RS12775at 617.863 kb on + strand, within BBR_RS12775at 617.865 kb on - strand, within BBR_RS12775at 617.928 kb on + strand, within BBR_RS12775at 617.928 kb on + strand, within BBR_RS12775at 617.928 kb on + strand, within BBR_RS12775at 617.928 kb on + strand, within BBR_RS12775at 617.928 kb on + strand, within BBR_RS12775at 617.936 kb on + strand, within BBR_RS12775at 617.936 kb on - strand, within BBR_RS12775at 617.936 kb on - strand, within BBR_RS12775at 617.936 kb on - strand, within BBR_RS12775at 618.019 kb on + strand, within BBR_RS12775at 618.021 kb on + strand, within BBR_RS12775at 618.038 kb on + strandat 618.055 kb on + strandat 618.110 kb on - strandat 618.115 kb on - strandat 618.157 kb on - strand, within BBR_RS12780at 618.169 kb on - strand, within BBR_RS12780

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Per-strain Table

Position Strand Gene LocusTag Fraction Recovery broth with Isovaleric 75 mM
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615,988 - BBR_RS12760 0.26 -0.2
616,086 - BBR_RS12760 0.34 +0.8
616,087 - BBR_RS12760 0.34 -0.6
616,103 - BBR_RS12760 0.35 -0.7
616,140 + BBR_RS12760 0.38 +0.9
616,140 + BBR_RS12760 0.38 -0.1
616,146 + BBR_RS12760 0.38 +0.1
616,148 - BBR_RS12760 0.39 +0.2
616,148 - BBR_RS12760 0.39 +0.3
616,153 + BBR_RS12760 0.39 +0.2
616,154 - BBR_RS12760 0.39 +1.4
616,154 - BBR_RS12760 0.39 -0.4
616,169 - BBR_RS12760 0.40 -0.3
616,178 + BBR_RS12760 0.41 +0.6
616,187 - BBR_RS12760 0.42 -1.0
616,201 + BBR_RS12760 0.43 -0.5
616,201 + BBR_RS12760 0.43 +0.2
616,202 - BBR_RS12760 0.43 +0.2
616,209 - BBR_RS12760 0.44 -0.1
616,273 + BBR_RS12760 0.49 +0.8
616,304 - BBR_RS12760 0.51 -0.5
616,305 + BBR_RS12760 0.51 +1.0
616,307 + BBR_RS12760 0.51 +0.2
616,338 + BBR_RS12760 0.54 +0.3
616,338 + BBR_RS12760 0.54 -0.3
616,345 - BBR_RS12760 0.55 +0.6
616,379 + BBR_RS12760 0.57 -0.8
616,379 + BBR_RS12760 0.57 +0.5
616,450 + BBR_RS12760 0.63 +0.8
616,536 - BBR_RS12760 0.70 -0.1
616,689 + BBR_RS12760 0.82 +1.5
616,706 - BBR_RS12760 0.84 +0.7
616,721 - BBR_RS12760 0.85 -0.3
616,779 - BBR_RS12760 0.90 +0.0
616,799 + +1.9
616,799 + +2.4
616,799 + -0.6
616,807 - +0.0
616,807 - +0.5
616,814 - +0.7
616,814 - +0.5
616,825 - +0.2
616,845 - +0.5
616,871 + -0.4
616,879 - +0.7
616,887 + +1.3
616,891 - -0.7
616,899 - -0.1
617,039 + BBR_RS12770 0.30 -0.5
617,053 + BBR_RS12770 0.37 +0.6
617,067 + BBR_RS12770 0.43 +0.7
617,085 + BBR_RS12770 0.52 -1.3
617,093 - BBR_RS12770 0.56 +0.2
617,103 - BBR_RS12770 0.61 +0.2
617,143 - BBR_RS12770 0.80 +0.5
617,177 + -0.2
617,215 - -0.5
617,215 - +0.1
617,221 - +0.3
617,261 + -0.3
617,263 + +0.0
617,294 - +0.8
617,343 + +0.3
617,345 + +0.0
617,345 + +0.7
617,345 + -0.7
617,351 - -0.3
617,353 + +1.3
617,353 + +0.1
617,415 + +0.6
617,439 + -0.0
617,454 - -0.4
617,462 - +1.1
617,529 + +0.0
617,555 - +0.3
617,560 + -0.7
617,601 - +0.3
617,627 + -0.5
617,627 + +0.2
617,627 + -1.7
617,627 + -0.3
617,627 + +0.2
617,672 + +0.6
617,680 - -0.9
617,735 + BBR_RS12775 0.20 +0.3
617,803 - BBR_RS12775 0.36 +0.1
617,863 + BBR_RS12775 0.51 +0.4
617,865 - BBR_RS12775 0.51 -0.0
617,928 + BBR_RS12775 0.66 -0.3
617,928 + BBR_RS12775 0.66 +0.5
617,928 + BBR_RS12775 0.66 +0.2
617,928 + BBR_RS12775 0.66 +0.3
617,928 + BBR_RS12775 0.66 -1.0
617,936 + BBR_RS12775 0.68 -0.1
617,936 - BBR_RS12775 0.68 +2.4
617,936 - BBR_RS12775 0.68 -0.3
617,936 - BBR_RS12775 0.68 -1.0
618,019 + BBR_RS12775 0.88 +0.5
618,021 + BBR_RS12775 0.89 -0.1
618,038 + +0.0
618,055 + +0.1
618,110 - -0.3
618,115 - +0.3
618,157 - BBR_RS12780 0.17 +0.6
618,169 - BBR_RS12780 0.19 -1.0

Or see this region's nucleotide sequence