Experiment: root EcoFAB sample 2; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS19980 and ABZR87_RS19985 are separated by 29 nucleotides ABZR87_RS19985 and ABZR87_RS19990 overlap by 4 nucleotides ABZR87_RS19990 and ABZR87_RS19995 are separated by 17 nucleotides ABZR87_RS19995 and ABZR87_RS20000 are separated by 235 nucleotides
ABZR87_RS19980: ABZR87_RS19980 - DUF1488 domain-containing protein, at 861,414 to 861,692
_RS19980
ABZR87_RS19985: ABZR87_RS19985 - ribose-phosphate pyrophosphokinase, at 861,722 to 862,663
_RS19985
ABZR87_RS19990: ABZR87_RS19990 - MBL fold metallo-hydrolase, at 862,660 to 864,024
_RS19990
ABZR87_RS19995: ABZR87_RS19995 - Hsp20/alpha crystallin family protein, at 864,042 to 864,464
_RS19995
ABZR87_RS20000: ABZR87_RS20000 - bifunctional aminoglycoside phosphotransferase/ATP-binding protein, at 864,700 to 866,247
_RS20000
Position (kb) 862
863
864
865 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 861.707 kb on - strand at 861.707 kb on - strand at 861.707 kb on - strand at 861.756 kb on - strand at 861.756 kb on - strand at 861.873 kb on + strand, within ABZR87_RS19985 at 861.873 kb on + strand, within ABZR87_RS19985 at 861.873 kb on + strand, within ABZR87_RS19985 at 861.874 kb on - strand, within ABZR87_RS19985 at 861.906 kb on - strand, within ABZR87_RS19985 at 861.906 kb on - strand, within ABZR87_RS19985 at 862.001 kb on + strand, within ABZR87_RS19985 at 862.001 kb on + strand, within ABZR87_RS19985 at 862.001 kb on + strand, within ABZR87_RS19985 at 862.002 kb on - strand, within ABZR87_RS19985 at 862.002 kb on - strand, within ABZR87_RS19985 at 862.002 kb on - strand, within ABZR87_RS19985 at 862.005 kb on + strand, within ABZR87_RS19985 at 862.005 kb on + strand, within ABZR87_RS19985 at 862.005 kb on + strand, within ABZR87_RS19985 at 862.005 kb on + strand, within ABZR87_RS19985 at 862.005 kb on + strand, within ABZR87_RS19985 at 862.006 kb on - strand, within ABZR87_RS19985 at 862.006 kb on - strand, within ABZR87_RS19985 at 862.033 kb on + strand, within ABZR87_RS19985 at 862.033 kb on + strand, within ABZR87_RS19985 at 862.034 kb on - strand, within ABZR87_RS19985 at 862.034 kb on - strand, within ABZR87_RS19985 at 862.160 kb on + strand, within ABZR87_RS19985 at 862.160 kb on + strand, within ABZR87_RS19985 at 862.160 kb on + strand, within ABZR87_RS19985 at 862.160 kb on + strand, within ABZR87_RS19985 at 862.160 kb on + strand, within ABZR87_RS19985 at 862.160 kb on + strand, within ABZR87_RS19985 at 862.160 kb on + strand, within ABZR87_RS19985 at 862.161 kb on - strand, within ABZR87_RS19985 at 862.161 kb on - strand, within ABZR87_RS19985 at 862.224 kb on + strand, within ABZR87_RS19985 at 862.224 kb on + strand, within ABZR87_RS19985 at 862.224 kb on + strand, within ABZR87_RS19985 at 862.360 kb on + strand, within ABZR87_RS19985 at 862.360 kb on + strand, within ABZR87_RS19985 at 862.360 kb on + strand, within ABZR87_RS19985 at 862.360 kb on + strand, within ABZR87_RS19985 at 862.360 kb on + strand, within ABZR87_RS19985 at 862.361 kb on - strand, within ABZR87_RS19985 at 862.361 kb on - strand, within ABZR87_RS19985 at 862.361 kb on - strand, within ABZR87_RS19985 at 862.361 kb on - strand, within ABZR87_RS19985 at 862.361 kb on - strand, within ABZR87_RS19985 at 862.362 kb on + strand, within ABZR87_RS19985 at 862.362 kb on + strand, within ABZR87_RS19985 at 862.362 kb on + strand, within ABZR87_RS19985 at 862.362 kb on + strand, within ABZR87_RS19985 at 862.362 kb on + strand, within ABZR87_RS19985 at 862.362 kb on + strand, within ABZR87_RS19985 at 862.362 kb on + strand, within ABZR87_RS19985 at 862.363 kb on - strand, within ABZR87_RS19985 at 862.363 kb on - strand, within ABZR87_RS19985 at 862.363 kb on - strand, within ABZR87_RS19985 at 862.363 kb on - strand, within ABZR87_RS19985 at 862.363 kb on - strand, within ABZR87_RS19985 at 862.363 kb on - strand, within ABZR87_RS19985 at 862.363 kb on - strand, within ABZR87_RS19985 at 862.372 kb on - strand, within ABZR87_RS19985 at 862.506 kb on + strand, within ABZR87_RS19985 at 862.506 kb on + strand, within ABZR87_RS19985 at 862.507 kb on - strand, within ABZR87_RS19985 at 862.507 kb on - strand, within ABZR87_RS19985 at 862.518 kb on + strand, within ABZR87_RS19985 at 862.518 kb on + strand, within ABZR87_RS19985 at 862.519 kb on - strand, within ABZR87_RS19985 at 862.519 kb on - strand, within ABZR87_RS19985 at 862.679 kb on + strand at 862.679 kb on + strand at 862.692 kb on - strand at 862.692 kb on - strand at 862.800 kb on + strand, within ABZR87_RS19990 at 863.154 kb on + strand, within ABZR87_RS19990 at 863.219 kb on + strand, within ABZR87_RS19990 at 863.219 kb on + strand, within ABZR87_RS19990 at 863.219 kb on + strand, within ABZR87_RS19990 at 863.219 kb on + strand, within ABZR87_RS19990 at 863.219 kb on + strand, within ABZR87_RS19990 at 863.220 kb on - strand, within ABZR87_RS19990 at 863.261 kb on + strand, within ABZR87_RS19990 at 863.261 kb on + strand, within ABZR87_RS19990 at 863.261 kb on + strand, within ABZR87_RS19990 at 863.261 kb on + strand, within ABZR87_RS19990 at 863.262 kb on - strand, within ABZR87_RS19990 at 863.262 kb on - strand, within ABZR87_RS19990 at 863.262 kb on - strand, within ABZR87_RS19990 at 863.262 kb on - strand, within ABZR87_RS19990 at 863.262 kb on - strand, within ABZR87_RS19990 at 863.270 kb on + strand, within ABZR87_RS19990 at 863.270 kb on + strand, within ABZR87_RS19990 at 863.286 kb on + strand, within ABZR87_RS19990 at 863.287 kb on - strand, within ABZR87_RS19990 at 863.399 kb on + strand, within ABZR87_RS19990 at 863.399 kb on + strand, within ABZR87_RS19990 at 863.399 kb on + strand, within ABZR87_RS19990 at 863.399 kb on + strand, within ABZR87_RS19990 at 863.400 kb on - strand, within ABZR87_RS19990 at 863.400 kb on - strand, within ABZR87_RS19990 at 863.601 kb on - strand, within ABZR87_RS19990 at 863.623 kb on + strand, within ABZR87_RS19990 at 863.624 kb on - strand, within ABZR87_RS19990 at 863.624 kb on - strand, within ABZR87_RS19990 at 863.652 kb on - strand, within ABZR87_RS19990 at 863.699 kb on + strand, within ABZR87_RS19990 at 863.700 kb on - strand, within ABZR87_RS19990 at 863.700 kb on - strand, within ABZR87_RS19990 at 863.778 kb on - strand, within ABZR87_RS19990 at 863.778 kb on - strand, within ABZR87_RS19990 at 863.778 kb on - strand, within ABZR87_RS19990 at 863.835 kb on + strand, within ABZR87_RS19990 at 863.851 kb on + strand, within ABZR87_RS19990 at 863.851 kb on + strand, within ABZR87_RS19990 at 863.852 kb on - strand, within ABZR87_RS19990 at 863.852 kb on - strand, within ABZR87_RS19990 at 863.919 kb on - strand at 863.919 kb on - strand at 863.919 kb on - strand at 863.975 kb on + strand at 863.975 kb on + strand at 863.976 kb on - strand at 863.976 kb on - strand at 863.976 kb on - strand at 864.115 kb on + strand, within ABZR87_RS19995 at 864.115 kb on + strand, within ABZR87_RS19995 at 864.115 kb on + strand, within ABZR87_RS19995 at 864.115 kb on + strand, within ABZR87_RS19995 at 864.184 kb on + strand, within ABZR87_RS19995 at 864.325 kb on + strand, within ABZR87_RS19995 at 864.326 kb on - strand, within ABZR87_RS19995 at 864.445 kb on + strand at 864.446 kb on - strand at 864.446 kb on - strand at 864.446 kb on - strand at 864.493 kb on - strand at 864.493 kb on - strand at 864.634 kb on + strand at 864.634 kb on + strand at 864.635 kb on - strand at 864.665 kb on + strand at 864.666 kb on - strand at 864.666 kb on - strand at 864.699 kb on + strand at 864.700 kb on - strand at 864.717 kb on + strand at 864.718 kb on - strand at 864.718 kb on - strand at 864.718 kb on - strand at 864.853 kb on + strand at 864.853 kb on + strand at 864.853 kb on + strand at 864.854 kb on - strand at 864.965 kb on + strand, within ABZR87_RS20000 at 864.965 kb on + strand, within ABZR87_RS20000 at 864.966 kb on - strand, within ABZR87_RS20000 at 864.966 kb on - strand, within ABZR87_RS20000 at 864.966 kb on - strand, within ABZR87_RS20000 at 864.967 kb on + strand, within ABZR87_RS20000 at 864.967 kb on + strand, within ABZR87_RS20000 at 864.967 kb on + strand, within ABZR87_RS20000 at 864.967 kb on + strand, within ABZR87_RS20000 at 864.967 kb on + strand, within ABZR87_RS20000 at 864.967 kb on + strand, within ABZR87_RS20000 at 864.967 kb on + strand, within ABZR87_RS20000 at 864.968 kb on - strand, within ABZR87_RS20000 at 864.968 kb on - strand, within ABZR87_RS20000 at 864.968 kb on - strand, within ABZR87_RS20000 at 864.968 kb on - strand, within ABZR87_RS20000 at 864.968 kb on - strand, within ABZR87_RS20000
Per-strain Table
Position Strand Gene LocusTag Fraction root EcoFAB sample 2; outgrowth in LB remove 861,707 - -0.0 861,707 - +0.4 861,707 - +2.6 861,756 - -0.4 861,756 - +0.2 861,873 + ABZR87_RS19985 0.16 -2.8 861,873 + ABZR87_RS19985 0.16 +0.4 861,873 + ABZR87_RS19985 0.16 -0.5 861,874 - ABZR87_RS19985 0.16 -0.1 861,906 - ABZR87_RS19985 0.20 +0.5 861,906 - ABZR87_RS19985 0.20 +0.3 862,001 + ABZR87_RS19985 0.30 -0.6 862,001 + ABZR87_RS19985 0.30 -2.4 862,001 + ABZR87_RS19985 0.30 -0.4 862,002 - ABZR87_RS19985 0.30 +1.1 862,002 - ABZR87_RS19985 0.30 +0.1 862,002 - ABZR87_RS19985 0.30 +0.1 862,005 + ABZR87_RS19985 0.30 -1.1 862,005 + ABZR87_RS19985 0.30 +0.6 862,005 + ABZR87_RS19985 0.30 -0.2 862,005 + ABZR87_RS19985 0.30 +0.9 862,005 + ABZR87_RS19985 0.30 -1.2 862,006 - ABZR87_RS19985 0.30 -1.7 862,006 - ABZR87_RS19985 0.30 -1.0 862,033 + ABZR87_RS19985 0.33 -0.5 862,033 + ABZR87_RS19985 0.33 +0.7 862,034 - ABZR87_RS19985 0.33 +0.3 862,034 - ABZR87_RS19985 0.33 -0.9 862,160 + ABZR87_RS19985 0.46 +0.2 862,160 + ABZR87_RS19985 0.46 -0.5 862,160 + ABZR87_RS19985 0.46 -0.5 862,160 + ABZR87_RS19985 0.46 +1.1 862,160 + ABZR87_RS19985 0.46 -1.0 862,160 + ABZR87_RS19985 0.46 +0.9 862,160 + ABZR87_RS19985 0.46 +1.1 862,161 - ABZR87_RS19985 0.47 +0.2 862,161 - ABZR87_RS19985 0.47 -0.9 862,224 + ABZR87_RS19985 0.53 -1.1 862,224 + ABZR87_RS19985 0.53 +0.6 862,224 + ABZR87_RS19985 0.53 -1.3 862,360 + ABZR87_RS19985 0.68 +0.4 862,360 + ABZR87_RS19985 0.68 -0.4 862,360 + ABZR87_RS19985 0.68 +0.0 862,360 + ABZR87_RS19985 0.68 -0.4 862,360 + ABZR87_RS19985 0.68 +0.1 862,361 - ABZR87_RS19985 0.68 -0.7 862,361 - ABZR87_RS19985 0.68 +0.0 862,361 - ABZR87_RS19985 0.68 -3.1 862,361 - ABZR87_RS19985 0.68 +1.6 862,361 - ABZR87_RS19985 0.68 -0.5 862,362 + ABZR87_RS19985 0.68 -0.1 862,362 + ABZR87_RS19985 0.68 -1.3 862,362 + ABZR87_RS19985 0.68 -1.6 862,362 + ABZR87_RS19985 0.68 -3.6 862,362 + ABZR87_RS19985 0.68 +0.9 862,362 + ABZR87_RS19985 0.68 -3.2 862,362 + ABZR87_RS19985 0.68 +0.6 862,363 - ABZR87_RS19985 0.68 -1.7 862,363 - ABZR87_RS19985 0.68 -0.7 862,363 - ABZR87_RS19985 0.68 -0.6 862,363 - ABZR87_RS19985 0.68 -2.0 862,363 - ABZR87_RS19985 0.68 -1.6 862,363 - ABZR87_RS19985 0.68 +0.8 862,363 - ABZR87_RS19985 0.68 -0.2 862,372 - ABZR87_RS19985 0.69 -0.7 862,506 + ABZR87_RS19985 0.83 -1.3 862,506 + ABZR87_RS19985 0.83 -1.3 862,507 - ABZR87_RS19985 0.83 -1.3 862,507 - ABZR87_RS19985 0.83 -2.3 862,518 + ABZR87_RS19985 0.85 +0.3 862,518 + ABZR87_RS19985 0.85 +0.2 862,519 - ABZR87_RS19985 0.85 -1.6 862,519 - ABZR87_RS19985 0.85 -0.7 862,679 + +0.2 862,679 + +0.9 862,692 - +0.3 862,692 - -0.4 862,800 + ABZR87_RS19990 0.10 -0.3 863,154 + ABZR87_RS19990 0.36 -1.5 863,219 + ABZR87_RS19990 0.41 +0.7 863,219 + ABZR87_RS19990 0.41 -0.0 863,219 + ABZR87_RS19990 0.41 +2.2 863,219 + ABZR87_RS19990 0.41 -1.9 863,219 + ABZR87_RS19990 0.41 +0.8 863,220 - ABZR87_RS19990 0.41 +0.2 863,261 + ABZR87_RS19990 0.44 -0.4 863,261 + ABZR87_RS19990 0.44 -1.3 863,261 + ABZR87_RS19990 0.44 +0.1 863,261 + ABZR87_RS19990 0.44 -0.1 863,262 - ABZR87_RS19990 0.44 +0.5 863,262 - ABZR87_RS19990 0.44 -0.2 863,262 - ABZR87_RS19990 0.44 +0.3 863,262 - ABZR87_RS19990 0.44 -1.9 863,262 - ABZR87_RS19990 0.44 +0.3 863,270 + ABZR87_RS19990 0.45 +1.0 863,270 + ABZR87_RS19990 0.45 -1.5 863,286 + ABZR87_RS19990 0.46 +0.2 863,287 - ABZR87_RS19990 0.46 +0.1 863,399 + ABZR87_RS19990 0.54 -0.2 863,399 + ABZR87_RS19990 0.54 +1.0 863,399 + ABZR87_RS19990 0.54 +0.5 863,399 + ABZR87_RS19990 0.54 -0.8 863,400 - ABZR87_RS19990 0.54 -0.0 863,400 - ABZR87_RS19990 0.54 +0.5 863,601 - ABZR87_RS19990 0.69 +0.9 863,623 + ABZR87_RS19990 0.71 +0.5 863,624 - ABZR87_RS19990 0.71 -0.0 863,624 - ABZR87_RS19990 0.71 -0.0 863,652 - ABZR87_RS19990 0.73 +0.3 863,699 + ABZR87_RS19990 0.76 -0.3 863,700 - ABZR87_RS19990 0.76 +0.5 863,700 - ABZR87_RS19990 0.76 +1.3 863,778 - ABZR87_RS19990 0.82 +0.1 863,778 - ABZR87_RS19990 0.82 -0.7 863,778 - ABZR87_RS19990 0.82 +0.8 863,835 + ABZR87_RS19990 0.86 -0.4 863,851 + ABZR87_RS19990 0.87 -2.3 863,851 + ABZR87_RS19990 0.87 +1.0 863,852 - ABZR87_RS19990 0.87 -0.5 863,852 - ABZR87_RS19990 0.87 -1.2 863,919 - +2.1 863,919 - +1.4 863,919 - -1.2 863,975 + +0.3 863,975 + -0.1 863,976 - +0.9 863,976 - +0.2 863,976 - +0.6 864,115 + ABZR87_RS19995 0.17 +0.5 864,115 + ABZR87_RS19995 0.17 -1.7 864,115 + ABZR87_RS19995 0.17 +0.5 864,115 + ABZR87_RS19995 0.17 -0.3 864,184 + ABZR87_RS19995 0.34 -1.9 864,325 + ABZR87_RS19995 0.67 +1.0 864,326 - ABZR87_RS19995 0.67 +3.6 864,445 + -0.1 864,446 - +1.9 864,446 - -1.9 864,446 - -0.2 864,493 - -0.3 864,493 - -0.8 864,634 + -2.4 864,634 + -1.0 864,635 - -1.8 864,665 + -1.2 864,666 - +1.5 864,666 - -0.5 864,699 + +3.2 864,700 - -1.8 864,717 + +0.1 864,718 - +2.1 864,718 - +0.5 864,718 - +0.3 864,853 + -0.7 864,853 + -0.0 864,853 + +1.6 864,854 - -0.7 864,965 + ABZR87_RS20000 0.17 +0.1 864,965 + ABZR87_RS20000 0.17 +0.3 864,966 - ABZR87_RS20000 0.17 -1.3 864,966 - ABZR87_RS20000 0.17 -1.1 864,966 - ABZR87_RS20000 0.17 +0.0 864,967 + ABZR87_RS20000 0.17 +2.0 864,967 + ABZR87_RS20000 0.17 +0.3 864,967 + ABZR87_RS20000 0.17 -0.0 864,967 + ABZR87_RS20000 0.17 +0.1 864,967 + ABZR87_RS20000 0.17 +0.0 864,967 + ABZR87_RS20000 0.17 +0.4 864,967 + ABZR87_RS20000 0.17 -1.1 864,968 - ABZR87_RS20000 0.17 +0.4 864,968 - ABZR87_RS20000 0.17 -0.4 864,968 - ABZR87_RS20000 0.17 +0.1 864,968 - ABZR87_RS20000 0.17 -0.9 864,968 - ABZR87_RS20000 0.17 -1.1
Or see this region's nucleotide sequence