Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS19755

Experiment: root EcoFAB sample 2; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS19745 and ABZR87_RS19750 overlap by 4 nucleotidesABZR87_RS19750 and ABZR87_RS19755 overlap by 14 nucleotidesABZR87_RS19755 and ABZR87_RS19760 are separated by 22 nucleotidesABZR87_RS19760 and ABZR87_RS19765 are separated by 242 nucleotides ABZR87_RS19745: ABZR87_RS19745 - DoxX family protein, at 805,653 to 806,123 _RS19745 ABZR87_RS19750: ABZR87_RS19750 - DNA-binding domain-containing protein, at 806,120 to 806,878 _RS19750 ABZR87_RS19755: ABZR87_RS19755 - DUF692 domain-containing protein, at 806,865 to 807,734 _RS19755 ABZR87_RS19760: ABZR87_RS19760 - DUF2282 domain-containing protein, at 807,757 to 808,023 _RS19760 ABZR87_RS19765: ABZR87_RS19765 - hypothetical protein, at 808,266 to 808,796 _RS19765 Position (kb) 806 807 808Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 805.927 kb on + strand, within ABZR87_RS19745at 805.928 kb on - strand, within ABZR87_RS19745at 805.928 kb on - strand, within ABZR87_RS19745at 805.999 kb on + strand, within ABZR87_RS19745at 806.000 kb on - strand, within ABZR87_RS19745at 806.000 kb on - strand, within ABZR87_RS19745at 806.008 kb on + strand, within ABZR87_RS19745at 806.091 kb on - strandat 806.138 kb on - strandat 806.185 kb on - strandat 806.290 kb on + strand, within ABZR87_RS19750at 806.541 kb on + strand, within ABZR87_RS19750at 806.541 kb on + strand, within ABZR87_RS19750at 806.542 kb on - strand, within ABZR87_RS19750at 806.590 kb on - strand, within ABZR87_RS19750at 806.745 kb on + strand, within ABZR87_RS19750at 806.746 kb on - strand, within ABZR87_RS19750at 806.794 kb on - strand, within ABZR87_RS19750at 807.028 kb on + strand, within ABZR87_RS19755at 807.029 kb on - strand, within ABZR87_RS19755at 807.029 kb on - strand, within ABZR87_RS19755at 807.029 kb on - strand, within ABZR87_RS19755at 807.029 kb on - strand, within ABZR87_RS19755at 807.062 kb on + strand, within ABZR87_RS19755at 807.187 kb on + strand, within ABZR87_RS19755at 807.301 kb on + strand, within ABZR87_RS19755at 807.394 kb on + strand, within ABZR87_RS19755at 807.395 kb on - strand, within ABZR87_RS19755at 807.617 kb on - strand, within ABZR87_RS19755at 807.617 kb on - strand, within ABZR87_RS19755at 807.617 kb on - strand, within ABZR87_RS19755at 807.617 kb on - strand, within ABZR87_RS19755at 807.622 kb on + strand, within ABZR87_RS19755at 807.622 kb on + strand, within ABZR87_RS19755at 807.622 kb on + strand, within ABZR87_RS19755at 807.622 kb on + strand, within ABZR87_RS19755at 807.622 kb on + strand, within ABZR87_RS19755at 807.622 kb on + strand, within ABZR87_RS19755at 807.623 kb on - strand, within ABZR87_RS19755at 807.623 kb on - strand, within ABZR87_RS19755at 807.623 kb on - strand, within ABZR87_RS19755at 807.623 kb on - strand, within ABZR87_RS19755at 807.623 kb on - strand, within ABZR87_RS19755at 807.623 kb on - strand, within ABZR87_RS19755at 807.623 kb on - strand, within ABZR87_RS19755at 807.623 kb on - strand, within ABZR87_RS19755at 807.758 kb on + strandat 807.815 kb on + strand, within ABZR87_RS19760at 807.815 kb on + strand, within ABZR87_RS19760at 807.815 kb on + strand, within ABZR87_RS19760at 807.815 kb on + strand, within ABZR87_RS19760at 807.816 kb on - strand, within ABZR87_RS19760at 807.816 kb on - strand, within ABZR87_RS19760at 807.926 kb on + strand, within ABZR87_RS19760at 807.987 kb on + strand, within ABZR87_RS19760at 808.085 kb on + strandat 808.085 kb on + strandat 808.086 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction root EcoFAB sample 2; outgrowth in LB
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805,927 + ABZR87_RS19745 0.58 +1.1
805,928 - ABZR87_RS19745 0.58 -0.7
805,928 - ABZR87_RS19745 0.58 -1.8
805,999 + ABZR87_RS19745 0.73 +0.5
806,000 - ABZR87_RS19745 0.74 -0.4
806,000 - ABZR87_RS19745 0.74 +0.9
806,008 + ABZR87_RS19745 0.75 +0.2
806,091 - +1.0
806,138 - +0.5
806,185 - -0.1
806,290 + ABZR87_RS19750 0.22 -1.8
806,541 + ABZR87_RS19750 0.55 -0.4
806,541 + ABZR87_RS19750 0.55 -2.5
806,542 - ABZR87_RS19750 0.56 +0.2
806,590 - ABZR87_RS19750 0.62 -0.2
806,745 + ABZR87_RS19750 0.82 -1.1
806,746 - ABZR87_RS19750 0.82 -1.1
806,794 - ABZR87_RS19750 0.89 +0.7
807,028 + ABZR87_RS19755 0.19 -1.6
807,029 - ABZR87_RS19755 0.19 +0.3
807,029 - ABZR87_RS19755 0.19 +0.0
807,029 - ABZR87_RS19755 0.19 -0.5
807,029 - ABZR87_RS19755 0.19 +0.0
807,062 + ABZR87_RS19755 0.23 -1.6
807,187 + ABZR87_RS19755 0.37 -1.6
807,301 + ABZR87_RS19755 0.50 +1.1
807,394 + ABZR87_RS19755 0.61 +0.8
807,395 - ABZR87_RS19755 0.61 +1.2
807,617 - ABZR87_RS19755 0.86 -0.6
807,617 - ABZR87_RS19755 0.86 +2.7
807,617 - ABZR87_RS19755 0.86 +0.9
807,617 - ABZR87_RS19755 0.86 +0.2
807,622 + ABZR87_RS19755 0.87 -0.7
807,622 + ABZR87_RS19755 0.87 +1.5
807,622 + ABZR87_RS19755 0.87 -3.2
807,622 + ABZR87_RS19755 0.87 +0.5
807,622 + ABZR87_RS19755 0.87 -0.2
807,622 + ABZR87_RS19755 0.87 +0.8
807,623 - ABZR87_RS19755 0.87 -0.3
807,623 - ABZR87_RS19755 0.87 +0.5
807,623 - ABZR87_RS19755 0.87 -0.5
807,623 - ABZR87_RS19755 0.87 -0.5
807,623 - ABZR87_RS19755 0.87 +0.2
807,623 - ABZR87_RS19755 0.87 +0.8
807,623 - ABZR87_RS19755 0.87 -1.5
807,623 - ABZR87_RS19755 0.87 -1.1
807,758 + -0.5
807,815 + ABZR87_RS19760 0.22 +0.6
807,815 + ABZR87_RS19760 0.22 +0.3
807,815 + ABZR87_RS19760 0.22 +0.1
807,815 + ABZR87_RS19760 0.22 +0.5
807,816 - ABZR87_RS19760 0.22 -1.0
807,816 - ABZR87_RS19760 0.22 +1.6
807,926 + ABZR87_RS19760 0.63 +0.1
807,987 + ABZR87_RS19760 0.86 -1.1
808,085 + +0.6
808,085 + +0.5
808,086 - -1.6

Or see this region's nucleotide sequence