Experiment: root EcoFAB sample 2; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS19165 and ABZR87_RS19170 are separated by 2 nucleotides ABZR87_RS19170 and ABZR87_RS19175 are separated by 89 nucleotides
ABZR87_RS19165: ABZR87_RS19165 - TerC family protein, at 663,470 to 665,050
_RS19165
ABZR87_RS19170: ABZR87_RS19170 - DMT family transporter, at 665,053 to 665,970
_RS19170
ABZR87_RS19175: ABZR87_RS19175 - AraC family transcriptional regulator, at 666,060 to 666,839
_RS19175
Position (kb) 665
666 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 664.094 kb on - strand, within ABZR87_RS19165 at 664.106 kb on + strand, within ABZR87_RS19165 at 664.107 kb on - strand, within ABZR87_RS19165 at 664.107 kb on - strand, within ABZR87_RS19165 at 664.112 kb on + strand, within ABZR87_RS19165 at 664.113 kb on - strand, within ABZR87_RS19165 at 664.176 kb on + strand, within ABZR87_RS19165 at 664.176 kb on + strand, within ABZR87_RS19165 at 664.176 kb on + strand, within ABZR87_RS19165 at 664.176 kb on + strand, within ABZR87_RS19165 at 664.177 kb on - strand, within ABZR87_RS19165 at 664.177 kb on - strand, within ABZR87_RS19165 at 664.177 kb on - strand, within ABZR87_RS19165 at 664.181 kb on + strand, within ABZR87_RS19165 at 664.408 kb on + strand, within ABZR87_RS19165 at 664.408 kb on + strand, within ABZR87_RS19165 at 664.488 kb on + strand, within ABZR87_RS19165 at 664.575 kb on + strand, within ABZR87_RS19165 at 664.576 kb on - strand, within ABZR87_RS19165 at 664.895 kb on + strand at 665.048 kb on + strand at 665.049 kb on - strand at 665.054 kb on + strand at 665.055 kb on - strand at 665.055 kb on - strand at 665.294 kb on + strand, within ABZR87_RS19170 at 665.295 kb on - strand, within ABZR87_RS19170 at 665.295 kb on - strand, within ABZR87_RS19170 at 665.297 kb on + strand, within ABZR87_RS19170 at 665.297 kb on + strand, within ABZR87_RS19170 at 665.297 kb on + strand, within ABZR87_RS19170 at 665.298 kb on - strand, within ABZR87_RS19170 at 665.715 kb on + strand, within ABZR87_RS19170 at 665.715 kb on + strand, within ABZR87_RS19170 at 665.716 kb on - strand, within ABZR87_RS19170 at 665.716 kb on - strand, within ABZR87_RS19170 at 665.716 kb on - strand, within ABZR87_RS19170 at 665.897 kb on - strand at 665.933 kb on + strand at 665.933 kb on + strand at 665.934 kb on - strand at 665.934 kb on - strand at 665.934 kb on - strand at 665.970 kb on + strand at 666.097 kb on + strand at 666.097 kb on + strand at 666.097 kb on + strand at 666.097 kb on + strand at 666.097 kb on + strand at 666.097 kb on + strand at 666.098 kb on - strand at 666.224 kb on - strand, within ABZR87_RS19175 at 666.224 kb on - strand, within ABZR87_RS19175 at 666.267 kb on + strand, within ABZR87_RS19175 at 666.268 kb on - strand, within ABZR87_RS19175 at 666.430 kb on - strand, within ABZR87_RS19175 at 666.619 kb on + strand, within ABZR87_RS19175 at 666.620 kb on - strand, within ABZR87_RS19175 at 666.620 kb on - strand, within ABZR87_RS19175 at 666.620 kb on - strand, within ABZR87_RS19175 at 666.952 kb on + strand at 666.952 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction root EcoFAB sample 2; outgrowth in LB remove 664,094 - ABZR87_RS19165 0.39 -1.8 664,106 + ABZR87_RS19165 0.40 -0.7 664,107 - ABZR87_RS19165 0.40 -0.0 664,107 - ABZR87_RS19165 0.40 +0.3 664,112 + ABZR87_RS19165 0.41 +0.0 664,113 - ABZR87_RS19165 0.41 -1.6 664,176 + ABZR87_RS19165 0.45 -0.3 664,176 + ABZR87_RS19165 0.45 -1.1 664,176 + ABZR87_RS19165 0.45 +1.1 664,176 + ABZR87_RS19165 0.45 -0.3 664,177 - ABZR87_RS19165 0.45 +1.2 664,177 - ABZR87_RS19165 0.45 +1.0 664,177 - ABZR87_RS19165 0.45 +1.1 664,181 + ABZR87_RS19165 0.45 +1.7 664,408 + ABZR87_RS19165 0.59 -0.9 664,408 + ABZR87_RS19165 0.59 -1.5 664,488 + ABZR87_RS19165 0.64 +0.7 664,575 + ABZR87_RS19165 0.70 -0.4 664,576 - ABZR87_RS19165 0.70 +0.1 664,895 + +1.1 665,048 + +0.3 665,049 - -1.5 665,054 + -0.5 665,055 - -0.8 665,055 - -0.9 665,294 + ABZR87_RS19170 0.26 -0.4 665,295 - ABZR87_RS19170 0.26 -0.6 665,295 - ABZR87_RS19170 0.26 -3.6 665,297 + ABZR87_RS19170 0.27 -1.6 665,297 + ABZR87_RS19170 0.27 -2.8 665,297 + ABZR87_RS19170 0.27 -1.0 665,298 - ABZR87_RS19170 0.27 -0.4 665,715 + ABZR87_RS19170 0.72 +1.0 665,715 + ABZR87_RS19170 0.72 -0.3 665,716 - ABZR87_RS19170 0.72 -0.3 665,716 - ABZR87_RS19170 0.72 -0.6 665,716 - ABZR87_RS19170 0.72 +0.2 665,897 - +0.1 665,933 + -0.4 665,933 + -2.7 665,934 - +0.4 665,934 - -2.2 665,934 - -0.5 665,970 + +0.7 666,097 + -1.5 666,097 + +0.5 666,097 + +1.6 666,097 + -1.3 666,097 + -0.3 666,097 + +0.2 666,098 - +0.4 666,224 - ABZR87_RS19175 0.21 +1.2 666,224 - ABZR87_RS19175 0.21 -1.4 666,267 + ABZR87_RS19175 0.27 +0.2 666,268 - ABZR87_RS19175 0.27 -0.8 666,430 - ABZR87_RS19175 0.47 +0.0 666,619 + ABZR87_RS19175 0.72 +2.3 666,620 - ABZR87_RS19175 0.72 -0.2 666,620 - ABZR87_RS19175 0.72 +1.4 666,620 - ABZR87_RS19175 0.72 +0.1 666,952 + -0.5 666,952 + +0.7
Or see this region's nucleotide sequence