Experiment: root EcoFAB sample 2; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS19125 and ABZR87_RS19130 are separated by 269 nucleotides ABZR87_RS19130 and ABZR87_RS19135 are separated by 292 nucleotides
ABZR87_RS19125: ABZR87_RS19125 - penicillin acylase family protein, at 651,843 to 654,272
_RS19125
ABZR87_RS19130: ABZR87_RS19130 - ATP-binding protein, at 654,542 to 656,437
_RS19130
ABZR87_RS19135: ABZR87_RS19135 - MFS transporter, at 656,730 to 658,028
_RS19135
Position (kb) 654
655
656
657 Strain fitness (log2 ratio) -2
-1
0
1
2 at 653.797 kb on + strand, within ABZR87_RS19125 at 653.797 kb on + strand, within ABZR87_RS19125 at 653.798 kb on - strand, within ABZR87_RS19125 at 653.857 kb on + strand, within ABZR87_RS19125 at 653.857 kb on + strand, within ABZR87_RS19125 at 653.857 kb on + strand, within ABZR87_RS19125 at 653.858 kb on - strand, within ABZR87_RS19125 at 653.858 kb on - strand, within ABZR87_RS19125 at 653.858 kb on - strand, within ABZR87_RS19125 at 653.911 kb on + strand, within ABZR87_RS19125 at 653.912 kb on - strand, within ABZR87_RS19125 at 653.945 kb on - strand, within ABZR87_RS19125 at 653.980 kb on + strand, within ABZR87_RS19125 at 653.981 kb on - strand, within ABZR87_RS19125 at 654.106 kb on + strand at 654.106 kb on + strand at 654.106 kb on + strand at 654.106 kb on + strand at 654.107 kb on - strand at 654.107 kb on - strand at 654.107 kb on - strand at 654.107 kb on - strand at 654.107 kb on - strand at 654.156 kb on + strand at 654.165 kb on + strand at 654.347 kb on - strand at 654.347 kb on - strand at 654.427 kb on + strand at 654.428 kb on - strand at 654.428 kb on - strand at 654.466 kb on + strand at 654.466 kb on + strand at 654.851 kb on + strand, within ABZR87_RS19130 at 654.873 kb on + strand, within ABZR87_RS19130 at 654.874 kb on - strand, within ABZR87_RS19130 at 655.186 kb on + strand, within ABZR87_RS19130 at 655.187 kb on - strand, within ABZR87_RS19130 at 655.593 kb on + strand, within ABZR87_RS19130 at 655.593 kb on + strand, within ABZR87_RS19130 at 655.848 kb on + strand, within ABZR87_RS19130 at 655.849 kb on - strand, within ABZR87_RS19130 at 655.849 kb on - strand, within ABZR87_RS19130 at 656.289 kb on + strand at 656.290 kb on - strand at 656.328 kb on + strand at 656.329 kb on - strand at 656.364 kb on + strand at 656.364 kb on + strand at 656.364 kb on + strand at 656.365 kb on - strand at 656.365 kb on - strand at 656.365 kb on - strand at 656.994 kb on + strand, within ABZR87_RS19135 at 656.995 kb on - strand, within ABZR87_RS19135 at 657.087 kb on + strand, within ABZR87_RS19135 at 657.172 kb on - strand, within ABZR87_RS19135 at 657.256 kb on + strand, within ABZR87_RS19135 at 657.429 kb on + strand, within ABZR87_RS19135 at 657.429 kb on + strand, within ABZR87_RS19135 at 657.430 kb on - strand, within ABZR87_RS19135 at 657.430 kb on - strand, within ABZR87_RS19135 at 657.430 kb on - strand, within ABZR87_RS19135 at 657.430 kb on - strand, within ABZR87_RS19135
Per-strain Table
Position Strand Gene LocusTag Fraction root EcoFAB sample 2; outgrowth in LB remove 653,797 + ABZR87_RS19125 0.80 -1.0 653,797 + ABZR87_RS19125 0.80 +0.0 653,798 - ABZR87_RS19125 0.80 -0.3 653,857 + ABZR87_RS19125 0.83 -0.7 653,857 + ABZR87_RS19125 0.83 -1.1 653,857 + ABZR87_RS19125 0.83 -0.3 653,858 - ABZR87_RS19125 0.83 -0.3 653,858 - ABZR87_RS19125 0.83 -0.7 653,858 - ABZR87_RS19125 0.83 +0.6 653,911 + ABZR87_RS19125 0.85 -1.6 653,912 - ABZR87_RS19125 0.85 -1.1 653,945 - ABZR87_RS19125 0.87 +0.2 653,980 + ABZR87_RS19125 0.88 +0.1 653,981 - ABZR87_RS19125 0.88 +0.8 654,106 + -0.4 654,106 + +0.0 654,106 + +0.7 654,106 + +0.3 654,107 - +2.1 654,107 - +0.4 654,107 - +0.1 654,107 - +0.1 654,107 - -0.7 654,156 + -0.1 654,165 + +1.0 654,347 - +0.5 654,347 - +0.1 654,427 + -1.1 654,428 - -0.3 654,428 - -0.6 654,466 + +0.3 654,466 + -0.5 654,851 + ABZR87_RS19130 0.16 -0.6 654,873 + ABZR87_RS19130 0.17 -0.9 654,874 - ABZR87_RS19130 0.18 -0.9 655,186 + ABZR87_RS19130 0.34 +0.0 655,187 - ABZR87_RS19130 0.34 -0.9 655,593 + ABZR87_RS19130 0.55 -0.2 655,593 + ABZR87_RS19130 0.55 -0.3 655,848 + ABZR87_RS19130 0.69 +1.7 655,849 - ABZR87_RS19130 0.69 -0.3 655,849 - ABZR87_RS19130 0.69 +1.5 656,289 + -0.4 656,290 - -2.5 656,328 + -1.5 656,329 - +0.4 656,364 + +0.4 656,364 + +0.2 656,364 + -1.5 656,365 - +0.4 656,365 - -2.2 656,365 - +2.0 656,994 + ABZR87_RS19135 0.20 -0.2 656,995 - ABZR87_RS19135 0.20 -1.6 657,087 + ABZR87_RS19135 0.27 +0.1 657,172 - ABZR87_RS19135 0.34 -1.2 657,256 + ABZR87_RS19135 0.40 +0.8 657,429 + ABZR87_RS19135 0.54 -0.0 657,429 + ABZR87_RS19135 0.54 +0.3 657,430 - ABZR87_RS19135 0.54 -0.6 657,430 - ABZR87_RS19135 0.54 +0.3 657,430 - ABZR87_RS19135 0.54 -1.5 657,430 - ABZR87_RS19135 0.54 +0.3
Or see this region's nucleotide sequence