Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS18960

Experiment: root EcoFAB sample 2; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS18955 and ABZR87_RS18960 overlap by 46 nucleotidesABZR87_RS18960 and ABZR87_RS18965 are separated by 91 nucleotides ABZR87_RS18955: ABZR87_RS18955 - AraC family transcriptional regulator, at 609,018 to 610,082 _RS18955 ABZR87_RS18960: ABZR87_RS18960 - MFS transporter, at 610,037 to 611,299 _RS18960 ABZR87_RS18965: ABZR87_RS18965 - cardiolipin synthase, at 611,391 to 612,824 _RS18965 Position (kb) 610 611 612Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 609.054 kb on + strandat 609.055 kb on - strandat 609.055 kb on - strandat 609.354 kb on + strand, within ABZR87_RS18955at 609.382 kb on + strand, within ABZR87_RS18955at 609.382 kb on + strand, within ABZR87_RS18955at 609.382 kb on + strand, within ABZR87_RS18955at 609.383 kb on - strand, within ABZR87_RS18955at 609.383 kb on - strand, within ABZR87_RS18955at 609.383 kb on - strand, within ABZR87_RS18955at 609.518 kb on + strand, within ABZR87_RS18955at 609.518 kb on + strand, within ABZR87_RS18955at 609.518 kb on + strand, within ABZR87_RS18955at 609.519 kb on - strand, within ABZR87_RS18955at 609.688 kb on + strand, within ABZR87_RS18955at 609.689 kb on - strand, within ABZR87_RS18955at 609.689 kb on - strand, within ABZR87_RS18955at 609.733 kb on - strand, within ABZR87_RS18955at 609.733 kb on - strand, within ABZR87_RS18955at 609.882 kb on + strand, within ABZR87_RS18955at 609.883 kb on - strand, within ABZR87_RS18955at 609.883 kb on - strand, within ABZR87_RS18955at 609.933 kb on + strand, within ABZR87_RS18955at 609.935 kb on + strand, within ABZR87_RS18955at 609.936 kb on - strand, within ABZR87_RS18955at 609.936 kb on - strand, within ABZR87_RS18955at 609.936 kb on - strand, within ABZR87_RS18955at 610.224 kb on + strand, within ABZR87_RS18960at 610.224 kb on + strand, within ABZR87_RS18960at 610.224 kb on + strand, within ABZR87_RS18960at 610.225 kb on - strand, within ABZR87_RS18960at 610.225 kb on - strand, within ABZR87_RS18960at 610.225 kb on - strand, within ABZR87_RS18960at 610.225 kb on - strand, within ABZR87_RS18960at 610.225 kb on - strand, within ABZR87_RS18960at 610.225 kb on - strand, within ABZR87_RS18960at 610.225 kb on - strand, within ABZR87_RS18960at 610.500 kb on + strand, within ABZR87_RS18960at 610.500 kb on + strand, within ABZR87_RS18960at 610.500 kb on + strand, within ABZR87_RS18960at 610.851 kb on + strand, within ABZR87_RS18960at 611.458 kb on + strandat 611.459 kb on - strandat 611.459 kb on - strandat 611.659 kb on + strand, within ABZR87_RS18965at 611.660 kb on - strand, within ABZR87_RS18965at 611.660 kb on - strand, within ABZR87_RS18965at 611.660 kb on - strand, within ABZR87_RS18965at 611.666 kb on - strand, within ABZR87_RS18965at 611.666 kb on - strand, within ABZR87_RS18965at 611.695 kb on + strand, within ABZR87_RS18965at 611.701 kb on + strand, within ABZR87_RS18965at 611.701 kb on + strand, within ABZR87_RS18965at 611.701 kb on + strand, within ABZR87_RS18965at 611.701 kb on + strand, within ABZR87_RS18965at 611.824 kb on + strand, within ABZR87_RS18965at 611.824 kb on + strand, within ABZR87_RS18965at 611.824 kb on + strand, within ABZR87_RS18965at 611.995 kb on + strand, within ABZR87_RS18965at 611.995 kb on + strand, within ABZR87_RS18965at 611.996 kb on - strand, within ABZR87_RS18965at 612.053 kb on + strand, within ABZR87_RS18965at 612.053 kb on + strand, within ABZR87_RS18965at 612.054 kb on - strand, within ABZR87_RS18965at 612.059 kb on + strand, within ABZR87_RS18965at 612.059 kb on + strand, within ABZR87_RS18965at 612.097 kb on + strand, within ABZR87_RS18965at 612.097 kb on + strand, within ABZR87_RS18965at 612.097 kb on + strand, within ABZR87_RS18965at 612.097 kb on + strand, within ABZR87_RS18965at 612.097 kb on + strand, within ABZR87_RS18965at 612.097 kb on + strand, within ABZR87_RS18965at 612.098 kb on - strand, within ABZR87_RS18965at 612.098 kb on - strand, within ABZR87_RS18965at 612.098 kb on - strand, within ABZR87_RS18965at 612.127 kb on + strand, within ABZR87_RS18965at 612.128 kb on - strand, within ABZR87_RS18965at 612.128 kb on - strand, within ABZR87_RS18965at 612.257 kb on - strand, within ABZR87_RS18965at 612.257 kb on - strand, within ABZR87_RS18965

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Per-strain Table

Position Strand Gene LocusTag Fraction root EcoFAB sample 2; outgrowth in LB
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609,054 + -2.0
609,055 - -0.4
609,055 - -3.1
609,354 + ABZR87_RS18955 0.32 -1.4
609,382 + ABZR87_RS18955 0.34 -0.0
609,382 + ABZR87_RS18955 0.34 +2.1
609,382 + ABZR87_RS18955 0.34 +0.2
609,383 - ABZR87_RS18955 0.34 +0.2
609,383 - ABZR87_RS18955 0.34 -0.7
609,383 - ABZR87_RS18955 0.34 +0.9
609,518 + ABZR87_RS18955 0.47 +0.0
609,518 + ABZR87_RS18955 0.47 -0.5
609,518 + ABZR87_RS18955 0.47 +2.3
609,519 - ABZR87_RS18955 0.47 +0.3
609,688 + ABZR87_RS18955 0.63 -1.7
609,689 - ABZR87_RS18955 0.63 -0.2
609,689 - ABZR87_RS18955 0.63 +1.4
609,733 - ABZR87_RS18955 0.67 +0.2
609,733 - ABZR87_RS18955 0.67 -2.0
609,882 + ABZR87_RS18955 0.81 -0.6
609,883 - ABZR87_RS18955 0.81 -0.9
609,883 - ABZR87_RS18955 0.81 +0.1
609,933 + ABZR87_RS18955 0.86 +2.0
609,935 + ABZR87_RS18955 0.86 +0.7
609,936 - ABZR87_RS18955 0.86 +0.8
609,936 - ABZR87_RS18955 0.86 +2.8
609,936 - ABZR87_RS18955 0.86 +1.1
610,224 + ABZR87_RS18960 0.15 +0.8
610,224 + ABZR87_RS18960 0.15 -1.2
610,224 + ABZR87_RS18960 0.15 +0.3
610,225 - ABZR87_RS18960 0.15 -0.1
610,225 - ABZR87_RS18960 0.15 +1.5
610,225 - ABZR87_RS18960 0.15 +0.0
610,225 - ABZR87_RS18960 0.15 +0.6
610,225 - ABZR87_RS18960 0.15 -1.3
610,225 - ABZR87_RS18960 0.15 -0.3
610,225 - ABZR87_RS18960 0.15 -2.4
610,500 + ABZR87_RS18960 0.37 -1.9
610,500 + ABZR87_RS18960 0.37 -1.0
610,500 + ABZR87_RS18960 0.37 +1.2
610,851 + ABZR87_RS18960 0.64 +1.3
611,458 + -2.0
611,459 - +1.2
611,459 - +1.3
611,659 + ABZR87_RS18965 0.19 +1.8
611,660 - ABZR87_RS18965 0.19 +1.1
611,660 - ABZR87_RS18965 0.19 -0.4
611,660 - ABZR87_RS18965 0.19 -1.0
611,666 - ABZR87_RS18965 0.19 +0.7
611,666 - ABZR87_RS18965 0.19 +1.5
611,695 + ABZR87_RS18965 0.21 -0.7
611,701 + ABZR87_RS18965 0.22 +0.8
611,701 + ABZR87_RS18965 0.22 +2.3
611,701 + ABZR87_RS18965 0.22 -1.3
611,701 + ABZR87_RS18965 0.22 -0.9
611,824 + ABZR87_RS18965 0.30 +0.2
611,824 + ABZR87_RS18965 0.30 -1.1
611,824 + ABZR87_RS18965 0.30 +0.7
611,995 + ABZR87_RS18965 0.42 +0.9
611,995 + ABZR87_RS18965 0.42 -0.3
611,996 - ABZR87_RS18965 0.42 +0.5
612,053 + ABZR87_RS18965 0.46 +0.3
612,053 + ABZR87_RS18965 0.46 +0.1
612,054 - ABZR87_RS18965 0.46 -0.4
612,059 + ABZR87_RS18965 0.47 +0.4
612,059 + ABZR87_RS18965 0.47 -1.4
612,097 + ABZR87_RS18965 0.49 +1.0
612,097 + ABZR87_RS18965 0.49 +1.1
612,097 + ABZR87_RS18965 0.49 -0.6
612,097 + ABZR87_RS18965 0.49 -0.4
612,097 + ABZR87_RS18965 0.49 -1.9
612,097 + ABZR87_RS18965 0.49 +0.6
612,098 - ABZR87_RS18965 0.49 -1.9
612,098 - ABZR87_RS18965 0.49 +1.1
612,098 - ABZR87_RS18965 0.49 -0.1
612,127 + ABZR87_RS18965 0.51 -1.7
612,128 - ABZR87_RS18965 0.51 +0.7
612,128 - ABZR87_RS18965 0.51 +0.9
612,257 - ABZR87_RS18965 0.60 +1.4
612,257 - ABZR87_RS18965 0.60 -1.9

Or see this region's nucleotide sequence