Experiment: root EcoFAB sample 2; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS18755 and ABZR87_RS18760 are separated by 886 nucleotides ABZR87_RS18760 and ABZR87_RS18765 are separated by 134 nucleotides
ABZR87_RS18755: ABZR87_RS18755 - DUF1488 family protein, at 560,496 to 560,837
_RS18755
ABZR87_RS18760: ABZR87_RS18760 - hypothetical protein, at 561,724 to 562,782
_RS18760
ABZR87_RS18765: ABZR87_RS18765 - S53 family peptidase, at 562,917 to 564,281
_RS18765
Position (kb) 561
562
563 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 560.903 kb on + strand at 560.990 kb on - strand at 560.990 kb on - strand at 561.005 kb on - strand at 561.020 kb on + strand at 561.021 kb on - strand at 561.081 kb on + strand at 561.081 kb on + strand at 561.082 kb on - strand at 561.094 kb on + strand at 561.094 kb on + strand at 561.094 kb on + strand at 561.095 kb on - strand at 561.095 kb on - strand at 561.095 kb on - strand at 561.102 kb on + strand at 561.103 kb on - strand at 561.103 kb on - strand at 561.103 kb on - strand at 561.103 kb on - strand at 561.108 kb on + strand at 561.108 kb on + strand at 561.137 kb on + strand at 561.137 kb on + strand at 561.138 kb on - strand at 561.138 kb on - strand at 561.138 kb on - strand at 561.138 kb on - strand at 561.175 kb on + strand at 561.176 kb on - strand at 561.176 kb on - strand at 561.176 kb on - strand at 561.176 kb on - strand at 561.176 kb on - strand at 561.336 kb on + strand at 561.377 kb on + strand at 561.387 kb on + strand at 561.387 kb on + strand at 561.387 kb on + strand at 561.387 kb on + strand at 561.387 kb on + strand at 561.387 kb on + strand at 561.387 kb on + strand at 561.387 kb on + strand at 561.388 kb on - strand at 561.388 kb on - strand at 561.388 kb on - strand at 561.388 kb on - strand at 561.388 kb on - strand at 561.388 kb on - strand at 561.388 kb on - strand at 561.388 kb on - strand at 561.388 kb on - strand at 561.388 kb on - strand at 561.388 kb on - strand at 561.388 kb on - strand at 561.421 kb on + strand at 561.421 kb on + strand at 561.421 kb on + strand at 561.421 kb on + strand at 561.421 kb on + strand at 561.422 kb on - strand at 561.422 kb on - strand at 561.422 kb on - strand at 561.440 kb on - strand at 561.452 kb on + strand at 561.453 kb on - strand at 561.453 kb on - strand at 561.459 kb on + strand at 561.459 kb on + strand at 561.460 kb on - strand at 561.460 kb on - strand at 561.460 kb on - strand at 561.474 kb on + strand at 561.475 kb on - strand at 561.475 kb on - strand at 561.475 kb on - strand at 561.475 kb on - strand at 561.484 kb on + strand at 561.485 kb on - strand at 561.485 kb on - strand at 561.485 kb on - strand at 561.508 kb on - strand at 561.508 kb on - strand at 561.508 kb on - strand at 561.526 kb on + strand at 561.526 kb on + strand at 561.526 kb on + strand at 561.527 kb on - strand at 561.527 kb on - strand at 561.574 kb on - strand at 561.574 kb on - strand at 561.582 kb on + strand at 561.583 kb on - strand at 561.644 kb on - strand at 561.674 kb on + strand at 561.919 kb on + strand, within ABZR87_RS18760 at 561.919 kb on + strand, within ABZR87_RS18760 at 561.919 kb on + strand, within ABZR87_RS18760 at 561.922 kb on + strand, within ABZR87_RS18760 at 561.922 kb on + strand, within ABZR87_RS18760 at 562.036 kb on + strand, within ABZR87_RS18760 at 562.036 kb on + strand, within ABZR87_RS18760 at 562.036 kb on + strand, within ABZR87_RS18760 at 562.037 kb on - strand, within ABZR87_RS18760 at 562.105 kb on + strand, within ABZR87_RS18760 at 562.137 kb on + strand, within ABZR87_RS18760 at 562.137 kb on + strand, within ABZR87_RS18760 at 562.138 kb on - strand, within ABZR87_RS18760 at 562.185 kb on + strand, within ABZR87_RS18760 at 562.186 kb on - strand, within ABZR87_RS18760 at 562.186 kb on - strand, within ABZR87_RS18760 at 562.186 kb on - strand, within ABZR87_RS18760 at 562.213 kb on + strand, within ABZR87_RS18760 at 562.213 kb on + strand, within ABZR87_RS18760 at 562.214 kb on - strand, within ABZR87_RS18760 at 562.214 kb on - strand, within ABZR87_RS18760 at 562.214 kb on - strand, within ABZR87_RS18760 at 562.355 kb on - strand, within ABZR87_RS18760 at 562.355 kb on - strand, within ABZR87_RS18760 at 562.438 kb on + strand, within ABZR87_RS18760 at 562.439 kb on - strand, within ABZR87_RS18760 at 562.535 kb on - strand, within ABZR87_RS18760 at 562.547 kb on - strand, within ABZR87_RS18760 at 562.547 kb on - strand, within ABZR87_RS18760 at 562.609 kb on + strand, within ABZR87_RS18760 at 562.610 kb on - strand, within ABZR87_RS18760 at 562.636 kb on + strand, within ABZR87_RS18760 at 562.637 kb on - strand, within ABZR87_RS18760 at 562.639 kb on + strand, within ABZR87_RS18760 at 562.639 kb on + strand, within ABZR87_RS18760 at 562.639 kb on + strand, within ABZR87_RS18760 at 562.640 kb on - strand, within ABZR87_RS18760 at 562.640 kb on - strand, within ABZR87_RS18760 at 562.640 kb on - strand, within ABZR87_RS18760 at 562.640 kb on - strand, within ABZR87_RS18760 at 562.640 kb on - strand, within ABZR87_RS18760 at 562.640 kb on - strand, within ABZR87_RS18760 at 562.653 kb on - strand, within ABZR87_RS18760 at 562.653 kb on - strand, within ABZR87_RS18760 at 562.653 kb on - strand, within ABZR87_RS18760 at 562.678 kb on + strand at 562.678 kb on + strand at 562.678 kb on + strand at 562.679 kb on - strand at 562.679 kb on - strand at 562.679 kb on - strand at 562.679 kb on - strand at 562.679 kb on - strand at 562.679 kb on - strand at 562.679 kb on - strand at 562.792 kb on + strand at 562.792 kb on + strand at 562.793 kb on - strand at 562.897 kb on + strand at 562.897 kb on + strand at 562.897 kb on + strand at 562.897 kb on + strand at 562.897 kb on + strand at 562.897 kb on + strand at 562.897 kb on + strand at 562.898 kb on - strand at 562.898 kb on - strand at 562.898 kb on - strand at 562.898 kb on - strand at 562.901 kb on + strand at 562.901 kb on + strand at 562.901 kb on + strand at 562.901 kb on + strand at 562.901 kb on + strand at 562.901 kb on + strand at 562.901 kb on + strand at 562.901 kb on + strand at 562.901 kb on + strand at 562.901 kb on + strand at 562.901 kb on + strand at 562.901 kb on + strand at 562.901 kb on + strand at 562.901 kb on + strand at 562.902 kb on - strand at 562.902 kb on - strand at 562.902 kb on - strand at 562.902 kb on - strand at 562.902 kb on - strand at 562.902 kb on - strand at 562.902 kb on - strand at 562.902 kb on - strand at 562.902 kb on - strand at 562.902 kb on - strand at 563.270 kb on + strand, within ABZR87_RS18765 at 563.308 kb on - strand, within ABZR87_RS18765 at 563.484 kb on + strand, within ABZR87_RS18765 at 563.511 kb on + strand, within ABZR87_RS18765 at 563.511 kb on + strand, within ABZR87_RS18765 at 563.512 kb on - strand, within ABZR87_RS18765 at 563.598 kb on + strand, within ABZR87_RS18765 at 563.598 kb on + strand, within ABZR87_RS18765 at 563.598 kb on + strand, within ABZR87_RS18765 at 563.599 kb on - strand, within ABZR87_RS18765 at 563.599 kb on - strand, within ABZR87_RS18765 at 563.757 kb on + strand, within ABZR87_RS18765 at 563.757 kb on + strand, within ABZR87_RS18765 at 563.757 kb on + strand, within ABZR87_RS18765 at 563.758 kb on - strand, within ABZR87_RS18765 at 563.758 kb on - strand, within ABZR87_RS18765 at 563.772 kb on - strand, within ABZR87_RS18765
Per-strain Table
Position Strand Gene LocusTag Fraction root EcoFAB sample 2; outgrowth in LB remove 560,903 + +0.2 560,990 - -2.4 560,990 - +0.4 561,005 - +1.2 561,020 + +1.1 561,021 - +0.1 561,081 + -1.6 561,081 + +0.3 561,082 - +0.7 561,094 + +0.4 561,094 + -0.6 561,094 + +1.0 561,095 - +0.1 561,095 - +0.0 561,095 - -0.1 561,102 + +1.7 561,103 - -0.1 561,103 - +0.5 561,103 - -0.2 561,103 - -0.7 561,108 + -2.6 561,108 + -1.8 561,137 + +0.3 561,137 + -0.5 561,138 - -1.4 561,138 - -2.0 561,138 - +0.2 561,138 - +1.0 561,175 + -0.2 561,176 - +0.4 561,176 - -2.4 561,176 - -0.4 561,176 - +0.7 561,176 - +0.8 561,336 + +0.2 561,377 + -0.7 561,387 + -0.4 561,387 + -0.6 561,387 + +1.6 561,387 + +0.0 561,387 + -1.5 561,387 + +0.5 561,387 + -1.8 561,387 + -0.9 561,388 - -0.3 561,388 - -1.2 561,388 - +0.8 561,388 - -0.4 561,388 - -0.4 561,388 - +1.1 561,388 - +2.0 561,388 - -2.6 561,388 - +2.8 561,388 - -0.8 561,388 - +1.5 561,388 - +0.6 561,421 + +0.5 561,421 + +0.3 561,421 + -1.4 561,421 + -1.9 561,421 + -1.5 561,422 - +1.3 561,422 - +1.3 561,422 - +0.3 561,440 - +0.1 561,452 + +0.6 561,453 - -0.9 561,453 - +1.2 561,459 + -2.4 561,459 + -0.4 561,460 - +0.3 561,460 - +0.6 561,460 - -0.6 561,474 + -0.2 561,475 - -1.2 561,475 - +1.4 561,475 - -0.6 561,475 - -1.5 561,484 + -1.1 561,485 - +0.4 561,485 - +0.3 561,485 - +0.6 561,508 - -0.2 561,508 - -0.8 561,508 - -1.4 561,526 + -0.7 561,526 + +0.7 561,526 + -1.4 561,527 - +1.1 561,527 - -0.0 561,574 - +2.0 561,574 - +1.0 561,582 + +0.8 561,583 - -1.8 561,644 - -3.7 561,674 + -2.6 561,919 + ABZR87_RS18760 0.18 +0.7 561,919 + ABZR87_RS18760 0.18 -0.2 561,919 + ABZR87_RS18760 0.18 -1.9 561,922 + ABZR87_RS18760 0.19 -0.5 561,922 + ABZR87_RS18760 0.19 +2.0 562,036 + ABZR87_RS18760 0.29 -0.3 562,036 + ABZR87_RS18760 0.29 -0.7 562,036 + ABZR87_RS18760 0.29 -1.0 562,037 - ABZR87_RS18760 0.30 -0.2 562,105 + ABZR87_RS18760 0.36 -1.3 562,137 + ABZR87_RS18760 0.39 +0.9 562,137 + ABZR87_RS18760 0.39 +0.8 562,138 - ABZR87_RS18760 0.39 +0.6 562,185 + ABZR87_RS18760 0.44 -2.3 562,186 - ABZR87_RS18760 0.44 -1.8 562,186 - ABZR87_RS18760 0.44 +0.3 562,186 - ABZR87_RS18760 0.44 +1.2 562,213 + ABZR87_RS18760 0.46 +0.5 562,213 + ABZR87_RS18760 0.46 -2.7 562,214 - ABZR87_RS18760 0.46 +0.6 562,214 - ABZR87_RS18760 0.46 -2.2 562,214 - ABZR87_RS18760 0.46 +2.4 562,355 - ABZR87_RS18760 0.60 +0.1 562,355 - ABZR87_RS18760 0.60 -0.7 562,438 + ABZR87_RS18760 0.67 +0.2 562,439 - ABZR87_RS18760 0.68 -0.2 562,535 - ABZR87_RS18760 0.77 +0.0 562,547 - ABZR87_RS18760 0.78 +1.4 562,547 - ABZR87_RS18760 0.78 -0.7 562,609 + ABZR87_RS18760 0.84 +1.3 562,610 - ABZR87_RS18760 0.84 -1.4 562,636 + ABZR87_RS18760 0.86 -1.7 562,637 - ABZR87_RS18760 0.86 -2.1 562,639 + ABZR87_RS18760 0.86 -0.0 562,639 + ABZR87_RS18760 0.86 -1.9 562,639 + ABZR87_RS18760 0.86 -2.2 562,640 - ABZR87_RS18760 0.86 +0.3 562,640 - ABZR87_RS18760 0.86 +1.0 562,640 - ABZR87_RS18760 0.86 +0.6 562,640 - ABZR87_RS18760 0.86 -0.2 562,640 - ABZR87_RS18760 0.86 +0.4 562,640 - ABZR87_RS18760 0.86 +0.9 562,653 - ABZR87_RS18760 0.88 -0.7 562,653 - ABZR87_RS18760 0.88 -0.1 562,653 - ABZR87_RS18760 0.88 +0.1 562,678 + -0.8 562,678 + +0.6 562,678 + +0.8 562,679 - -0.2 562,679 - +0.5 562,679 - -0.6 562,679 - -0.2 562,679 - +0.0 562,679 - -0.4 562,679 - +2.0 562,792 + -1.1 562,792 + -1.3 562,793 - +0.1 562,897 + -0.7 562,897 + -0.5 562,897 + +0.3 562,897 + +0.1 562,897 + +0.0 562,897 + +0.0 562,897 + +0.2 562,898 - -0.7 562,898 - +2.0 562,898 - -0.1 562,898 - +1.3 562,901 + -1.5 562,901 + -0.6 562,901 + -1.6 562,901 + -0.2 562,901 + +0.1 562,901 + -0.4 562,901 + -0.4 562,901 + -0.8 562,901 + -2.1 562,901 + +1.1 562,901 + -1.7 562,901 + -1.6 562,901 + +0.7 562,901 + -0.2 562,902 - +0.9 562,902 - -1.9 562,902 - -0.4 562,902 - +1.7 562,902 - -2.1 562,902 - +0.8 562,902 - +1.3 562,902 - -1.4 562,902 - -1.4 562,902 - -0.1 563,270 + ABZR87_RS18765 0.26 +0.5 563,308 - ABZR87_RS18765 0.29 -1.9 563,484 + ABZR87_RS18765 0.42 -0.1 563,511 + ABZR87_RS18765 0.44 +0.0 563,511 + ABZR87_RS18765 0.44 -2.6 563,512 - ABZR87_RS18765 0.44 +1.2 563,598 + ABZR87_RS18765 0.50 +1.1 563,598 + ABZR87_RS18765 0.50 -0.0 563,598 + ABZR87_RS18765 0.50 -0.7 563,599 - ABZR87_RS18765 0.50 -0.2 563,599 - ABZR87_RS18765 0.50 +0.2 563,757 + ABZR87_RS18765 0.62 +1.1 563,757 + ABZR87_RS18765 0.62 -1.2 563,757 + ABZR87_RS18765 0.62 +0.6 563,758 - ABZR87_RS18765 0.62 +0.3 563,758 - ABZR87_RS18765 0.62 +1.2 563,772 - ABZR87_RS18765 0.63 -0.3
Or see this region's nucleotide sequence