Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS18365

Experiment: root EcoFAB sample 2; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS18360 and ABZR87_RS18365 are separated by 97 nucleotidesABZR87_RS18365 and ABZR87_RS18370 are separated by 35 nucleotides ABZR87_RS18360: ABZR87_RS18360 - galactofuranose ABC transporter, permease protein YjfF, at 485,715 to 486,788 _RS18360 ABZR87_RS18365: ABZR87_RS18365 - helix-turn-helix domain-containing GNAT family N-acetyltransferase, at 486,886 to 487,860 _RS18365 ABZR87_RS18370: ABZR87_RS18370 - arylamine N-acetyltransferase, at 487,896 to 488,705 _RS18370 Position (kb) 486 487 488Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 485.909 kb on - strand, within ABZR87_RS18360at 485.909 kb on - strand, within ABZR87_RS18360at 486.005 kb on - strand, within ABZR87_RS18360at 486.114 kb on + strand, within ABZR87_RS18360at 486.114 kb on + strand, within ABZR87_RS18360at 486.114 kb on + strand, within ABZR87_RS18360at 486.114 kb on + strand, within ABZR87_RS18360at 486.144 kb on - strand, within ABZR87_RS18360at 486.144 kb on - strand, within ABZR87_RS18360at 486.156 kb on + strand, within ABZR87_RS18360at 486.156 kb on + strand, within ABZR87_RS18360at 486.156 kb on + strand, within ABZR87_RS18360at 486.156 kb on + strand, within ABZR87_RS18360at 486.157 kb on - strand, within ABZR87_RS18360at 486.159 kb on - strand, within ABZR87_RS18360at 486.174 kb on + strand, within ABZR87_RS18360at 486.174 kb on + strand, within ABZR87_RS18360at 486.174 kb on + strand, within ABZR87_RS18360at 486.175 kb on - strand, within ABZR87_RS18360at 486.175 kb on - strand, within ABZR87_RS18360at 486.201 kb on + strand, within ABZR87_RS18360at 486.201 kb on + strand, within ABZR87_RS18360at 486.201 kb on + strand, within ABZR87_RS18360at 486.201 kb on + strand, within ABZR87_RS18360at 486.201 kb on + strand, within ABZR87_RS18360at 486.202 kb on - strand, within ABZR87_RS18360at 486.202 kb on - strand, within ABZR87_RS18360at 486.202 kb on - strand, within ABZR87_RS18360at 486.202 kb on - strand, within ABZR87_RS18360at 486.202 kb on - strand, within ABZR87_RS18360at 486.202 kb on - strand, within ABZR87_RS18360at 486.202 kb on - strand, within ABZR87_RS18360at 486.205 kb on + strand, within ABZR87_RS18360at 486.205 kb on + strand, within ABZR87_RS18360at 486.205 kb on + strand, within ABZR87_RS18360at 486.206 kb on - strand, within ABZR87_RS18360at 486.288 kb on + strand, within ABZR87_RS18360at 486.360 kb on + strand, within ABZR87_RS18360at 486.360 kb on + strand, within ABZR87_RS18360at 486.360 kb on + strand, within ABZR87_RS18360at 486.361 kb on - strand, within ABZR87_RS18360at 486.361 kb on - strand, within ABZR87_RS18360at 486.411 kb on + strand, within ABZR87_RS18360at 486.411 kb on + strand, within ABZR87_RS18360at 486.411 kb on + strand, within ABZR87_RS18360at 486.411 kb on + strand, within ABZR87_RS18360at 486.412 kb on - strand, within ABZR87_RS18360at 486.412 kb on - strand, within ABZR87_RS18360at 486.412 kb on - strand, within ABZR87_RS18360at 486.412 kb on - strand, within ABZR87_RS18360at 486.446 kb on + strand, within ABZR87_RS18360at 486.446 kb on + strand, within ABZR87_RS18360at 486.446 kb on + strand, within ABZR87_RS18360at 486.446 kb on + strand, within ABZR87_RS18360at 486.690 kb on - strandat 486.772 kb on + strandat 486.773 kb on - strandat 486.786 kb on + strandat 486.786 kb on + strandat 486.786 kb on + strandat 486.787 kb on - strandat 486.787 kb on - strandat 486.849 kb on + strandat 486.851 kb on + strandat 486.871 kb on + strandat 487.396 kb on + strand, within ABZR87_RS18365at 487.397 kb on - strand, within ABZR87_RS18365at 487.397 kb on - strand, within ABZR87_RS18365at 487.445 kb on - strand, within ABZR87_RS18365at 487.720 kb on + strand, within ABZR87_RS18365at 487.721 kb on - strand, within ABZR87_RS18365at 487.721 kb on - strand, within ABZR87_RS18365at 487.762 kb on + strand, within ABZR87_RS18365at 487.785 kb on + strandat 487.785 kb on + strandat 487.786 kb on - strandat 487.815 kb on + strandat 487.816 kb on - strandat 487.816 kb on - strandat 487.924 kb on - strandat 488.029 kb on + strand, within ABZR87_RS18370at 488.029 kb on + strand, within ABZR87_RS18370at 488.029 kb on + strand, within ABZR87_RS18370at 488.030 kb on - strand, within ABZR87_RS18370at 488.030 kb on - strand, within ABZR87_RS18370at 488.104 kb on - strand, within ABZR87_RS18370at 488.374 kb on + strand, within ABZR87_RS18370at 488.375 kb on - strand, within ABZR87_RS18370at 488.389 kb on + strand, within ABZR87_RS18370at 488.389 kb on + strand, within ABZR87_RS18370at 488.390 kb on - strand, within ABZR87_RS18370at 488.393 kb on + strand, within ABZR87_RS18370at 488.469 kb on + strand, within ABZR87_RS18370at 488.469 kb on + strand, within ABZR87_RS18370at 488.470 kb on - strand, within ABZR87_RS18370at 488.481 kb on + strand, within ABZR87_RS18370at 488.481 kb on + strand, within ABZR87_RS18370at 488.481 kb on + strand, within ABZR87_RS18370at 488.481 kb on + strand, within ABZR87_RS18370at 488.482 kb on - strand, within ABZR87_RS18370at 488.640 kb on + strandat 488.641 kb on - strandat 488.641 kb on - strandat 488.738 kb on + strandat 488.738 kb on + strandat 488.738 kb on + strandat 488.738 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction root EcoFAB sample 2; outgrowth in LB
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485,909 - ABZR87_RS18360 0.18 -1.2
485,909 - ABZR87_RS18360 0.18 +0.2
486,005 - ABZR87_RS18360 0.27 +0.0
486,114 + ABZR87_RS18360 0.37 -1.9
486,114 + ABZR87_RS18360 0.37 +0.5
486,114 + ABZR87_RS18360 0.37 +1.0
486,114 + ABZR87_RS18360 0.37 -0.8
486,144 - ABZR87_RS18360 0.40 -1.1
486,144 - ABZR87_RS18360 0.40 +0.2
486,156 + ABZR87_RS18360 0.41 -0.0
486,156 + ABZR87_RS18360 0.41 +0.2
486,156 + ABZR87_RS18360 0.41 -1.4
486,156 + ABZR87_RS18360 0.41 -0.1
486,157 - ABZR87_RS18360 0.41 -0.7
486,159 - ABZR87_RS18360 0.41 -0.3
486,174 + ABZR87_RS18360 0.43 -0.3
486,174 + ABZR87_RS18360 0.43 -0.2
486,174 + ABZR87_RS18360 0.43 +0.2
486,175 - ABZR87_RS18360 0.43 +1.1
486,175 - ABZR87_RS18360 0.43 +2.2
486,201 + ABZR87_RS18360 0.45 +0.1
486,201 + ABZR87_RS18360 0.45 -0.5
486,201 + ABZR87_RS18360 0.45 +0.3
486,201 + ABZR87_RS18360 0.45 -0.3
486,201 + ABZR87_RS18360 0.45 -1.2
486,202 - ABZR87_RS18360 0.45 +1.0
486,202 - ABZR87_RS18360 0.45 -1.2
486,202 - ABZR87_RS18360 0.45 -2.3
486,202 - ABZR87_RS18360 0.45 +0.9
486,202 - ABZR87_RS18360 0.45 -1.1
486,202 - ABZR87_RS18360 0.45 +0.2
486,202 - ABZR87_RS18360 0.45 +0.3
486,205 + ABZR87_RS18360 0.46 +0.8
486,205 + ABZR87_RS18360 0.46 -1.8
486,205 + ABZR87_RS18360 0.46 -1.2
486,206 - ABZR87_RS18360 0.46 +0.1
486,288 + ABZR87_RS18360 0.53 -0.7
486,360 + ABZR87_RS18360 0.60 +0.2
486,360 + ABZR87_RS18360 0.60 +0.2
486,360 + ABZR87_RS18360 0.60 +1.2
486,361 - ABZR87_RS18360 0.60 -0.0
486,361 - ABZR87_RS18360 0.60 +1.9
486,411 + ABZR87_RS18360 0.65 -1.9
486,411 + ABZR87_RS18360 0.65 -0.3
486,411 + ABZR87_RS18360 0.65 +1.2
486,411 + ABZR87_RS18360 0.65 -1.7
486,412 - ABZR87_RS18360 0.65 +1.7
486,412 - ABZR87_RS18360 0.65 +1.5
486,412 - ABZR87_RS18360 0.65 -0.1
486,412 - ABZR87_RS18360 0.65 -1.1
486,446 + ABZR87_RS18360 0.68 -0.1
486,446 + ABZR87_RS18360 0.68 -0.8
486,446 + ABZR87_RS18360 0.68 -0.9
486,446 + ABZR87_RS18360 0.68 -0.4
486,690 - -0.5
486,772 + +0.4
486,773 - -0.5
486,786 + +0.8
486,786 + +1.7
486,786 + -0.1
486,787 - +0.1
486,787 - +1.6
486,849 + -0.9
486,851 + +0.1
486,871 + -1.2
487,396 + ABZR87_RS18365 0.52 +2.4
487,397 - ABZR87_RS18365 0.52 +0.2
487,397 - ABZR87_RS18365 0.52 -2.2
487,445 - ABZR87_RS18365 0.57 +1.7
487,720 + ABZR87_RS18365 0.86 +2.0
487,721 - ABZR87_RS18365 0.86 +0.3
487,721 - ABZR87_RS18365 0.86 +0.4
487,762 + ABZR87_RS18365 0.90 +0.3
487,785 + +0.8
487,785 + +0.8
487,786 - -0.5
487,815 + +0.2
487,816 - +0.4
487,816 - -0.7
487,924 - +0.3
488,029 + ABZR87_RS18370 0.16 -1.0
488,029 + ABZR87_RS18370 0.16 -2.6
488,029 + ABZR87_RS18370 0.16 -1.8
488,030 - ABZR87_RS18370 0.17 -0.3
488,030 - ABZR87_RS18370 0.17 -0.8
488,104 - ABZR87_RS18370 0.26 -1.3
488,374 + ABZR87_RS18370 0.59 -1.8
488,375 - ABZR87_RS18370 0.59 +1.8
488,389 + ABZR87_RS18370 0.61 -0.8
488,389 + ABZR87_RS18370 0.61 +0.5
488,390 - ABZR87_RS18370 0.61 -0.4
488,393 + ABZR87_RS18370 0.61 +1.7
488,469 + ABZR87_RS18370 0.71 -1.0
488,469 + ABZR87_RS18370 0.71 -1.2
488,470 - ABZR87_RS18370 0.71 -3.2
488,481 + ABZR87_RS18370 0.72 -2.4
488,481 + ABZR87_RS18370 0.72 -1.8
488,481 + ABZR87_RS18370 0.72 +0.4
488,481 + ABZR87_RS18370 0.72 -0.3
488,482 - ABZR87_RS18370 0.72 +0.2
488,640 + -1.6
488,641 - -2.0
488,641 - +1.0
488,738 + +1.0
488,738 + +0.0
488,738 + +0.5
488,738 + +0.9

Or see this region's nucleotide sequence