Experiment: root EcoFAB sample 2; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS18135 and ABZR87_RS18140 overlap by 8 nucleotides ABZR87_RS18140 and ABZR87_RS18145 are separated by 24 nucleotides ABZR87_RS18145 and ABZR87_RS18150 are separated by 110 nucleotides
ABZR87_RS18135: ABZR87_RS18135 - FliM/FliN family flagellar motor switch protein, at 432,517 to 433,680
_RS18135
ABZR87_RS18140: ABZR87_RS18140 - type III secretion system export apparatus subunit SctR, at 433,673 to 434,332
_RS18140
ABZR87_RS18145: ABZR87_RS18145 - lytic transglycosylase domain-containing protein, at 434,357 to 435,109
_RS18145
ABZR87_RS18150: ABZR87_RS18150 - LuxR family transcriptional regulator, at 435,220 to 436,107
_RS18150
Position (kb) 434
435
436 Strain fitness (log2 ratio) -2
-1
0
1
2 at 433.679 kb on - strand at 433.760 kb on + strand, within ABZR87_RS18140 at 433.760 kb on + strand, within ABZR87_RS18140 at 434.097 kb on + strand, within ABZR87_RS18140 at 434.097 kb on + strand, within ABZR87_RS18140 at 434.120 kb on - strand, within ABZR87_RS18140 at 434.325 kb on - strand at 434.630 kb on + strand, within ABZR87_RS18145 at 434.631 kb on - strand, within ABZR87_RS18145 at 434.820 kb on - strand, within ABZR87_RS18145 at 434.858 kb on + strand, within ABZR87_RS18145 at 435.168 kb on + strand at 435.168 kb on + strand at 435.169 kb on + strand at 435.185 kb on - strand at 435.185 kb on - strand at 435.238 kb on - strand at 435.425 kb on - strand, within ABZR87_RS18150 at 435.484 kb on + strand, within ABZR87_RS18150 at 435.541 kb on + strand, within ABZR87_RS18150 at 435.542 kb on - strand, within ABZR87_RS18150 at 435.568 kb on + strand, within ABZR87_RS18150 at 435.568 kb on + strand, within ABZR87_RS18150 at 435.583 kb on + strand, within ABZR87_RS18150 at 435.583 kb on + strand, within ABZR87_RS18150 at 435.584 kb on - strand, within ABZR87_RS18150 at 435.748 kb on + strand, within ABZR87_RS18150 at 435.748 kb on + strand, within ABZR87_RS18150 at 435.749 kb on - strand, within ABZR87_RS18150 at 435.749 kb on - strand, within ABZR87_RS18150 at 435.749 kb on - strand, within ABZR87_RS18150 at 435.878 kb on - strand, within ABZR87_RS18150 at 435.889 kb on + strand, within ABZR87_RS18150 at 436.031 kb on - strand at 436.100 kb on - strand at 436.106 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction root EcoFAB sample 2; outgrowth in LB remove 433,679 - +0.1 433,760 + ABZR87_RS18140 0.13 +1.8 433,760 + ABZR87_RS18140 0.13 -0.4 434,097 + ABZR87_RS18140 0.64 +0.0 434,097 + ABZR87_RS18140 0.64 +0.6 434,120 - ABZR87_RS18140 0.68 -1.0 434,325 - -1.7 434,630 + ABZR87_RS18145 0.36 -1.0 434,631 - ABZR87_RS18145 0.36 -0.1 434,820 - ABZR87_RS18145 0.61 -2.5 434,858 + ABZR87_RS18145 0.67 -0.3 435,168 + -0.6 435,168 + +0.6 435,169 + -0.7 435,185 - +0.8 435,185 - +1.2 435,238 - +0.9 435,425 - ABZR87_RS18150 0.23 -0.0 435,484 + ABZR87_RS18150 0.30 +0.7 435,541 + ABZR87_RS18150 0.36 -2.0 435,542 - ABZR87_RS18150 0.36 +0.1 435,568 + ABZR87_RS18150 0.39 +0.2 435,568 + ABZR87_RS18150 0.39 +0.3 435,583 + ABZR87_RS18150 0.41 -0.5 435,583 + ABZR87_RS18150 0.41 -0.5 435,584 - ABZR87_RS18150 0.41 +0.3 435,748 + ABZR87_RS18150 0.59 -0.2 435,748 + ABZR87_RS18150 0.59 +0.3 435,749 - ABZR87_RS18150 0.60 +0.0 435,749 - ABZR87_RS18150 0.60 -0.4 435,749 - ABZR87_RS18150 0.60 +0.7 435,878 - ABZR87_RS18150 0.74 -2.7 435,889 + ABZR87_RS18150 0.75 +0.3 436,031 - -0.2 436,100 - -0.4 436,106 - +0.9
Or see this region's nucleotide sequence