Experiment: root EcoFAB sample 2; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS18015 and ABZR87_RS18020 are separated by 58 nucleotides ABZR87_RS18020 and ABZR87_RS18025 are separated by 498 nucleotides
ABZR87_RS18015: ABZR87_RS18015 - flagellar biosynthesis protein FlhB, at 397,331 to 398,506
_RS18015
ABZR87_RS18020: ABZR87_RS18020 - YitT family protein, at 398,565 to 399,218
_RS18020
ABZR87_RS18025: ABZR87_RS18025 - flagellar biosynthesis protein FlhA, at 399,717 to 401,852
_RS18025
Position (kb) 398
399
400 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5
6 at 397.572 kb on - strand, within ABZR87_RS18015 at 397.572 kb on - strand, within ABZR87_RS18015 at 397.824 kb on - strand, within ABZR87_RS18015 at 397.824 kb on - strand, within ABZR87_RS18015 at 398.144 kb on + strand, within ABZR87_RS18015 at 398.145 kb on - strand, within ABZR87_RS18015 at 398.145 kb on - strand, within ABZR87_RS18015 at 398.145 kb on - strand, within ABZR87_RS18015 at 398.295 kb on - strand, within ABZR87_RS18015 at 398.336 kb on + strand, within ABZR87_RS18015 at 398.363 kb on + strand, within ABZR87_RS18015 at 398.363 kb on + strand, within ABZR87_RS18015 at 398.363 kb on + strand, within ABZR87_RS18015 at 398.363 kb on + strand, within ABZR87_RS18015 at 398.363 kb on + strand, within ABZR87_RS18015 at 398.363 kb on + strand, within ABZR87_RS18015 at 398.364 kb on - strand, within ABZR87_RS18015 at 398.364 kb on - strand, within ABZR87_RS18015 at 398.369 kb on + strand, within ABZR87_RS18015 at 398.369 kb on + strand, within ABZR87_RS18015 at 398.369 kb on + strand, within ABZR87_RS18015 at 398.370 kb on - strand, within ABZR87_RS18015 at 398.582 kb on + strand at 398.582 kb on + strand at 398.582 kb on + strand at 398.583 kb on + strand at 398.583 kb on - strand at 398.583 kb on - strand at 398.583 kb on - strand at 398.584 kb on + strand at 398.585 kb on - strand at 398.585 kb on - strand at 398.585 kb on - strand at 398.585 kb on - strand at 398.585 kb on - strand at 398.585 kb on - strand at 398.874 kb on + strand, within ABZR87_RS18020 at 398.874 kb on + strand, within ABZR87_RS18020 at 398.874 kb on + strand, within ABZR87_RS18020 at 398.875 kb on - strand, within ABZR87_RS18020 at 398.875 kb on - strand, within ABZR87_RS18020 at 398.875 kb on - strand, within ABZR87_RS18020 at 399.028 kb on + strand, within ABZR87_RS18020 at 399.029 kb on - strand, within ABZR87_RS18020 at 399.133 kb on + strand, within ABZR87_RS18020 at 399.134 kb on - strand, within ABZR87_RS18020 at 399.307 kb on + strand at 399.308 kb on - strand at 399.308 kb on - strand at 399.443 kb on - strand at 399.443 kb on - strand at 399.506 kb on + strand at 399.506 kb on + strand at 399.522 kb on - strand at 399.522 kb on - strand at 399.533 kb on + strand at 399.534 kb on - strand at 399.546 kb on + strand at 399.584 kb on + strand at 399.610 kb on + strand at 399.610 kb on + strand at 399.610 kb on + strand at 399.611 kb on - strand at 400.077 kb on + strand, within ABZR87_RS18025 at 400.077 kb on + strand, within ABZR87_RS18025 at 400.077 kb on + strand, within ABZR87_RS18025 at 400.078 kb on - strand, within ABZR87_RS18025
Per-strain Table
Position Strand Gene LocusTag Fraction root EcoFAB sample 2; outgrowth in LB remove 397,572 - ABZR87_RS18015 0.20 +3.8 397,572 - ABZR87_RS18015 0.20 +2.6 397,824 - ABZR87_RS18015 0.42 +2.0 397,824 - ABZR87_RS18015 0.42 +1.1 398,144 + ABZR87_RS18015 0.69 +1.9 398,145 - ABZR87_RS18015 0.69 +3.3 398,145 - ABZR87_RS18015 0.69 +2.5 398,145 - ABZR87_RS18015 0.69 +2.4 398,295 - ABZR87_RS18015 0.82 +2.7 398,336 + ABZR87_RS18015 0.85 +1.6 398,363 + ABZR87_RS18015 0.88 +6.0 398,363 + ABZR87_RS18015 0.88 +2.1 398,363 + ABZR87_RS18015 0.88 +3.8 398,363 + ABZR87_RS18015 0.88 +2.1 398,363 + ABZR87_RS18015 0.88 +4.2 398,363 + ABZR87_RS18015 0.88 +2.2 398,364 - ABZR87_RS18015 0.88 +1.0 398,364 - ABZR87_RS18015 0.88 +2.1 398,369 + ABZR87_RS18015 0.88 +3.2 398,369 + ABZR87_RS18015 0.88 +2.3 398,369 + ABZR87_RS18015 0.88 +1.9 398,370 - ABZR87_RS18015 0.88 +2.5 398,582 + +2.6 398,582 + +0.4 398,582 + +1.0 398,583 + -0.3 398,583 - -0.7 398,583 - -0.9 398,583 - -0.2 398,584 + +0.8 398,585 - +0.9 398,585 - +1.0 398,585 - -0.5 398,585 - -0.8 398,585 - -1.1 398,585 - +0.4 398,874 + ABZR87_RS18020 0.47 +0.4 398,874 + ABZR87_RS18020 0.47 +1.5 398,874 + ABZR87_RS18020 0.47 +1.1 398,875 - ABZR87_RS18020 0.47 -2.3 398,875 - ABZR87_RS18020 0.47 +1.4 398,875 - ABZR87_RS18020 0.47 +0.3 399,028 + ABZR87_RS18020 0.71 +0.6 399,029 - ABZR87_RS18020 0.71 +1.7 399,133 + ABZR87_RS18020 0.87 -1.5 399,134 - ABZR87_RS18020 0.87 -1.7 399,307 + +0.5 399,308 - +3.6 399,308 - -0.7 399,443 - -0.5 399,443 - +2.2 399,506 + +0.9 399,506 + +0.1 399,522 - -0.2 399,522 - -0.8 399,533 + -0.3 399,534 - +0.6 399,546 + -0.1 399,584 + +0.7 399,610 + +2.3 399,610 + +0.9 399,610 + -1.3 399,611 - +1.0 400,077 + ABZR87_RS18025 0.17 +3.9 400,077 + ABZR87_RS18025 0.17 +2.8 400,077 + ABZR87_RS18025 0.17 +2.7 400,078 - ABZR87_RS18025 0.17 +2.5
Or see this region's nucleotide sequence