Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS17825

Experiment: root EcoFAB sample 2; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS17815 and ABZR87_RS17820 overlap by 4 nucleotidesABZR87_RS17820 and ABZR87_RS17825 overlap by 4 nucleotidesABZR87_RS17825 and ABZR87_RS17830 overlap by 4 nucleotidesABZR87_RS17830 and ABZR87_RS17835 overlap by 23 nucleotides ABZR87_RS17815: ABZR87_RS17815 - sterol desaturase family protein, at 356,080 to 357,213 _RS17815 ABZR87_RS17820: ABZR87_RS17820 - phosphatase PAP2 family protein, at 357,210 to 357,833 _RS17820 ABZR87_RS17825: ABZR87_RS17825 - F390 synthetase-related protein, at 357,830 to 359,140 _RS17825 ABZR87_RS17830: ABZR87_RS17830 - MBL fold metallo-hydrolase, at 359,137 to 359,943 _RS17830 ABZR87_RS17835: ABZR87_RS17835 - NAD(P)-dependent oxidoreductase, at 359,921 to 360,934 _RS17835 Position (kb) 357 358 359 360Strain fitness (log2 ratio) -2 -1 0 1 2at 357.030 kb on + strand, within ABZR87_RS17815at 357.030 kb on + strand, within ABZR87_RS17815at 357.030 kb on + strand, within ABZR87_RS17815at 357.030 kb on + strand, within ABZR87_RS17815at 357.031 kb on - strand, within ABZR87_RS17815at 357.031 kb on - strand, within ABZR87_RS17815at 357.031 kb on - strand, within ABZR87_RS17815at 357.031 kb on - strand, within ABZR87_RS17815at 357.031 kb on - strand, within ABZR87_RS17815at 357.031 kb on - strand, within ABZR87_RS17815at 357.031 kb on - strand, within ABZR87_RS17815at 357.032 kb on + strand, within ABZR87_RS17815at 357.032 kb on + strand, within ABZR87_RS17815at 357.032 kb on + strand, within ABZR87_RS17815at 357.033 kb on - strand, within ABZR87_RS17815at 357.033 kb on - strand, within ABZR87_RS17815at 357.033 kb on - strand, within ABZR87_RS17815at 357.034 kb on + strand, within ABZR87_RS17815at 357.034 kb on + strand, within ABZR87_RS17815at 357.035 kb on - strand, within ABZR87_RS17815at 357.261 kb on + strandat 357.262 kb on - strandat 357.262 kb on - strandat 357.640 kb on + strand, within ABZR87_RS17820at 357.640 kb on + strand, within ABZR87_RS17820at 357.673 kb on + strand, within ABZR87_RS17820at 357.674 kb on - strand, within ABZR87_RS17820at 357.674 kb on - strand, within ABZR87_RS17820at 357.674 kb on - strand, within ABZR87_RS17820at 357.674 kb on - strand, within ABZR87_RS17820at 357.696 kb on - strand, within ABZR87_RS17820at 357.769 kb on + strand, within ABZR87_RS17820at 357.769 kb on + strand, within ABZR87_RS17820at 357.770 kb on - strand, within ABZR87_RS17820at 357.770 kb on - strand, within ABZR87_RS17820at 357.770 kb on - strand, within ABZR87_RS17820at 357.803 kb on + strandat 357.804 kb on - strandat 358.053 kb on + strand, within ABZR87_RS17825at 358.150 kb on + strand, within ABZR87_RS17825at 358.410 kb on + strand, within ABZR87_RS17825at 358.410 kb on + strand, within ABZR87_RS17825at 358.446 kb on - strand, within ABZR87_RS17825at 358.487 kb on + strand, within ABZR87_RS17825at 358.488 kb on - strand, within ABZR87_RS17825at 358.668 kb on + strand, within ABZR87_RS17825at 358.669 kb on - strand, within ABZR87_RS17825at 358.669 kb on - strand, within ABZR87_RS17825at 358.833 kb on + strand, within ABZR87_RS17825at 358.834 kb on - strand, within ABZR87_RS17825at 359.005 kb on - strand, within ABZR87_RS17825at 359.110 kb on - strandat 359.219 kb on + strand, within ABZR87_RS17830at 359.219 kb on + strand, within ABZR87_RS17830at 359.219 kb on + strand, within ABZR87_RS17830at 359.220 kb on - strand, within ABZR87_RS17830at 359.279 kb on + strand, within ABZR87_RS17830at 359.280 kb on - strand, within ABZR87_RS17830at 359.727 kb on - strand, within ABZR87_RS17830at 359.748 kb on - strand, within ABZR87_RS17830at 359.901 kb on + strandat 359.901 kb on + strandat 359.902 kb on - strandat 360.004 kb on - strandat 360.049 kb on - strand, within ABZR87_RS17835

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Per-strain Table

Position Strand Gene LocusTag Fraction root EcoFAB sample 2; outgrowth in LB
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357,030 + ABZR87_RS17815 0.84 -0.1
357,030 + ABZR87_RS17815 0.84 -2.2
357,030 + ABZR87_RS17815 0.84 -1.8
357,030 + ABZR87_RS17815 0.84 +0.3
357,031 - ABZR87_RS17815 0.84 -1.0
357,031 - ABZR87_RS17815 0.84 +0.6
357,031 - ABZR87_RS17815 0.84 -1.0
357,031 - ABZR87_RS17815 0.84 +1.6
357,031 - ABZR87_RS17815 0.84 +0.3
357,031 - ABZR87_RS17815 0.84 -1.0
357,031 - ABZR87_RS17815 0.84 +0.5
357,032 + ABZR87_RS17815 0.84 +1.1
357,032 + ABZR87_RS17815 0.84 -0.3
357,032 + ABZR87_RS17815 0.84 +1.1
357,033 - ABZR87_RS17815 0.84 +0.4
357,033 - ABZR87_RS17815 0.84 -0.9
357,033 - ABZR87_RS17815 0.84 +0.0
357,034 + ABZR87_RS17815 0.84 -0.1
357,034 + ABZR87_RS17815 0.84 -0.4
357,035 - ABZR87_RS17815 0.84 +0.4
357,261 + +0.5
357,262 - -2.1
357,262 - -0.2
357,640 + ABZR87_RS17820 0.69 -0.4
357,640 + ABZR87_RS17820 0.69 -0.1
357,673 + ABZR87_RS17820 0.74 -0.4
357,674 - ABZR87_RS17820 0.74 -0.3
357,674 - ABZR87_RS17820 0.74 +0.5
357,674 - ABZR87_RS17820 0.74 -0.6
357,674 - ABZR87_RS17820 0.74 -1.1
357,696 - ABZR87_RS17820 0.78 -0.1
357,769 + ABZR87_RS17820 0.90 +1.2
357,769 + ABZR87_RS17820 0.90 -1.4
357,770 - ABZR87_RS17820 0.90 -0.4
357,770 - ABZR87_RS17820 0.90 -0.3
357,770 - ABZR87_RS17820 0.90 +1.4
357,803 + +0.3
357,804 - +0.1
358,053 + ABZR87_RS17825 0.17 +0.8
358,150 + ABZR87_RS17825 0.24 +1.2
358,410 + ABZR87_RS17825 0.44 -0.3
358,410 + ABZR87_RS17825 0.44 -2.2
358,446 - ABZR87_RS17825 0.47 +0.1
358,487 + ABZR87_RS17825 0.50 +1.8
358,488 - ABZR87_RS17825 0.50 +0.6
358,668 + ABZR87_RS17825 0.64 +0.8
358,669 - ABZR87_RS17825 0.64 +1.1
358,669 - ABZR87_RS17825 0.64 -0.1
358,833 + ABZR87_RS17825 0.77 +0.1
358,834 - ABZR87_RS17825 0.77 -1.0
359,005 - ABZR87_RS17825 0.90 +1.4
359,110 - +0.3
359,219 + ABZR87_RS17830 0.10 +0.2
359,219 + ABZR87_RS17830 0.10 -0.8
359,219 + ABZR87_RS17830 0.10 -1.7
359,220 - ABZR87_RS17830 0.10 +0.1
359,279 + ABZR87_RS17830 0.18 +2.0
359,280 - ABZR87_RS17830 0.18 -0.4
359,727 - ABZR87_RS17830 0.73 +0.7
359,748 - ABZR87_RS17830 0.76 +0.2
359,901 + -0.5
359,901 + -2.2
359,902 - +1.3
360,004 - +1.2
360,049 - ABZR87_RS17835 0.13 -0.4

Or see this region's nucleotide sequence