Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS17730

Experiment: root EcoFAB sample 2; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS17720 and ABZR87_RS17725 overlap by 11 nucleotidesABZR87_RS17725 and ABZR87_RS17730 are separated by 51 nucleotidesABZR87_RS17730 and ABZR87_RS17735 are separated by 228 nucleotides ABZR87_RS17720: ABZR87_RS17720 - ABC transporter permease, at 338,346 to 339,242 _RS17720 ABZR87_RS17725: ABZR87_RS17725 - ABC transporter ATP-binding protein, at 339,232 to 340,026 _RS17725 ABZR87_RS17730: ABZR87_RS17730 - GntR family transcriptional regulator, at 340,078 to 340,800 _RS17730 ABZR87_RS17735: ABZR87_RS17735 - ABC transporter substrate-binding protein, at 341,029 to 342,078 _RS17735 Position (kb) 340 341Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 339.112 kb on + strand, within ABZR87_RS17720at 339.182 kb on - strandat 339.182 kb on - strandat 339.182 kb on - strandat 339.457 kb on + strand, within ABZR87_RS17725at 339.644 kb on + strand, within ABZR87_RS17725at 339.645 kb on - strand, within ABZR87_RS17725at 339.645 kb on - strand, within ABZR87_RS17725at 339.867 kb on + strand, within ABZR87_RS17725at 339.867 kb on + strand, within ABZR87_RS17725at 339.868 kb on - strand, within ABZR87_RS17725at 339.896 kb on + strand, within ABZR87_RS17725at 339.897 kb on - strand, within ABZR87_RS17725at 339.897 kb on - strand, within ABZR87_RS17725at 339.897 kb on - strand, within ABZR87_RS17725at 339.933 kb on - strand, within ABZR87_RS17725at 339.933 kb on - strand, within ABZR87_RS17725at 339.933 kb on - strand, within ABZR87_RS17725at 339.933 kb on - strand, within ABZR87_RS17725at 339.933 kb on - strand, within ABZR87_RS17725at 340.070 kb on - strandat 340.154 kb on + strand, within ABZR87_RS17730at 340.220 kb on + strand, within ABZR87_RS17730at 340.221 kb on - strand, within ABZR87_RS17730at 340.221 kb on - strand, within ABZR87_RS17730at 340.221 kb on - strand, within ABZR87_RS17730at 340.293 kb on - strand, within ABZR87_RS17730at 340.293 kb on - strand, within ABZR87_RS17730at 340.293 kb on - strand, within ABZR87_RS17730at 340.302 kb on - strand, within ABZR87_RS17730at 340.676 kb on + strand, within ABZR87_RS17730at 340.676 kb on + strand, within ABZR87_RS17730at 340.676 kb on + strand, within ABZR87_RS17730at 340.773 kb on - strandat 340.822 kb on - strandat 340.822 kb on - strandat 340.829 kb on + strandat 340.831 kb on + strandat 340.832 kb on - strandat 340.847 kb on - strandat 340.847 kb on - strandat 340.847 kb on - strandat 340.872 kb on - strandat 340.872 kb on - strandat 340.924 kb on - strandat 340.970 kb on + strandat 340.970 kb on + strandat 340.971 kb on - strandat 340.971 kb on - strandat 340.971 kb on - strandat 340.973 kb on + strandat 340.973 kb on + strandat 340.973 kb on + strandat 340.973 kb on + strandat 340.974 kb on - strandat 340.974 kb on - strandat 341.216 kb on - strand, within ABZR87_RS17735at 341.216 kb on - strand, within ABZR87_RS17735at 341.245 kb on + strand, within ABZR87_RS17735at 341.246 kb on - strand, within ABZR87_RS17735at 341.266 kb on + strand, within ABZR87_RS17735at 341.296 kb on + strand, within ABZR87_RS17735at 341.296 kb on + strand, within ABZR87_RS17735at 341.296 kb on + strand, within ABZR87_RS17735at 341.297 kb on - strand, within ABZR87_RS17735at 341.297 kb on - strand, within ABZR87_RS17735at 341.393 kb on - strand, within ABZR87_RS17735at 341.464 kb on + strand, within ABZR87_RS17735at 341.465 kb on - strand, within ABZR87_RS17735at 341.465 kb on - strand, within ABZR87_RS17735at 341.465 kb on - strand, within ABZR87_RS17735at 341.737 kb on + strand, within ABZR87_RS17735at 341.774 kb on - strand, within ABZR87_RS17735

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Per-strain Table

Position Strand Gene LocusTag Fraction root EcoFAB sample 2; outgrowth in LB
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339,112 + ABZR87_RS17720 0.85 -0.5
339,182 - +0.1
339,182 - +0.4
339,182 - +1.5
339,457 + ABZR87_RS17725 0.28 +1.0
339,644 + ABZR87_RS17725 0.52 -0.1
339,645 - ABZR87_RS17725 0.52 +1.1
339,645 - ABZR87_RS17725 0.52 +0.5
339,867 + ABZR87_RS17725 0.80 +0.7
339,867 + ABZR87_RS17725 0.80 -0.7
339,868 - ABZR87_RS17725 0.80 -0.2
339,896 + ABZR87_RS17725 0.84 +0.3
339,897 - ABZR87_RS17725 0.84 -2.1
339,897 - ABZR87_RS17725 0.84 +1.6
339,897 - ABZR87_RS17725 0.84 +1.3
339,933 - ABZR87_RS17725 0.88 -0.4
339,933 - ABZR87_RS17725 0.88 -0.5
339,933 - ABZR87_RS17725 0.88 +1.0
339,933 - ABZR87_RS17725 0.88 +0.6
339,933 - ABZR87_RS17725 0.88 -0.9
340,070 - +0.0
340,154 + ABZR87_RS17730 0.11 -2.1
340,220 + ABZR87_RS17730 0.20 +0.1
340,221 - ABZR87_RS17730 0.20 -2.3
340,221 - ABZR87_RS17730 0.20 -2.2
340,221 - ABZR87_RS17730 0.20 -1.6
340,293 - ABZR87_RS17730 0.30 +0.1
340,293 - ABZR87_RS17730 0.30 -0.6
340,293 - ABZR87_RS17730 0.30 -1.0
340,302 - ABZR87_RS17730 0.31 +0.1
340,676 + ABZR87_RS17730 0.83 -1.9
340,676 + ABZR87_RS17730 0.83 -2.3
340,676 + ABZR87_RS17730 0.83 -2.7
340,773 - -1.0
340,822 - -0.2
340,822 - -0.1
340,829 + -0.1
340,831 + +0.3
340,832 - +0.7
340,847 - -0.7
340,847 - +0.2
340,847 - -0.8
340,872 - +1.6
340,872 - -1.8
340,924 - -1.8
340,970 + -2.8
340,970 + -0.2
340,971 - +1.2
340,971 - +0.6
340,971 - -0.8
340,973 + -1.3
340,973 + +1.5
340,973 + -0.9
340,973 + +0.2
340,974 - +1.0
340,974 - +0.2
341,216 - ABZR87_RS17735 0.18 -0.4
341,216 - ABZR87_RS17735 0.18 -0.5
341,245 + ABZR87_RS17735 0.21 +0.8
341,246 - ABZR87_RS17735 0.21 +0.9
341,266 + ABZR87_RS17735 0.23 -0.6
341,296 + ABZR87_RS17735 0.25 -0.1
341,296 + ABZR87_RS17735 0.25 -0.1
341,296 + ABZR87_RS17735 0.25 +0.9
341,297 - ABZR87_RS17735 0.26 +0.0
341,297 - ABZR87_RS17735 0.26 -0.2
341,393 - ABZR87_RS17735 0.35 -0.4
341,464 + ABZR87_RS17735 0.41 -1.2
341,465 - ABZR87_RS17735 0.42 +0.2
341,465 - ABZR87_RS17735 0.42 +0.3
341,465 - ABZR87_RS17735 0.42 -0.2
341,737 + ABZR87_RS17735 0.67 +0.8
341,774 - ABZR87_RS17735 0.71 +2.1

Or see this region's nucleotide sequence