Experiment: root EcoFAB sample 2; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS17685 and ABZR87_RS17690 are separated by 115 nucleotides ABZR87_RS17690 and ABZR87_RS17695 are separated by 114 nucleotides ABZR87_RS17695 and ABZR87_RS17700 are separated by 17 nucleotides
ABZR87_RS17685: ABZR87_RS17685 - LysR family transcriptional regulator, at 333,444 to 334,328
_RS17685
ABZR87_RS17690: ABZR87_RS17690 - multidrug/biocide efflux PACE transporter, at 334,444 to 334,881
_RS17690
ABZR87_RS17695: ABZR87_RS17695 - helix-turn-helix transcriptional regulator, at 334,996 to 335,634
_RS17695
ABZR87_RS17700: ABZR87_RS17700 - DUF1059 domain-containing protein, at 335,652 to 335,870
_RS17700
Position (kb) 334
335 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 333.510 kb on + strand at 333.511 kb on - strand at 333.511 kb on - strand at 333.649 kb on + strand, within ABZR87_RS17685 at 333.650 kb on - strand, within ABZR87_RS17685 at 333.756 kb on + strand, within ABZR87_RS17685 at 333.869 kb on - strand, within ABZR87_RS17685 at 334.006 kb on + strand, within ABZR87_RS17685 at 334.006 kb on + strand, within ABZR87_RS17685 at 334.021 kb on + strand, within ABZR87_RS17685 at 334.021 kb on + strand, within ABZR87_RS17685 at 334.021 kb on + strand, within ABZR87_RS17685 at 334.021 kb on + strand, within ABZR87_RS17685 at 334.021 kb on + strand, within ABZR87_RS17685 at 334.022 kb on - strand, within ABZR87_RS17685 at 334.022 kb on - strand, within ABZR87_RS17685 at 334.022 kb on - strand, within ABZR87_RS17685 at 334.284 kb on - strand at 334.305 kb on + strand at 334.306 kb on - strand at 334.306 kb on - strand at 334.306 kb on - strand at 334.360 kb on + strand at 334.381 kb on - strand at 334.405 kb on - strand at 334.436 kb on + strand at 334.436 kb on + strand at 334.436 kb on + strand at 334.436 kb on + strand at 334.436 kb on + strand at 334.436 kb on + strand at 334.436 kb on + strand at 334.437 kb on - strand at 334.437 kb on - strand at 334.437 kb on - strand at 334.437 kb on - strand at 334.437 kb on - strand at 334.437 kb on - strand at 334.437 kb on - strand at 334.437 kb on - strand at 334.438 kb on + strand at 334.438 kb on + strand at 334.438 kb on + strand at 334.438 kb on + strand at 334.438 kb on + strand at 334.439 kb on - strand at 334.439 kb on - strand at 334.439 kb on - strand at 334.439 kb on - strand at 334.455 kb on - strand at 334.455 kb on - strand at 334.481 kb on + strand at 334.481 kb on + strand at 334.481 kb on + strand at 334.481 kb on + strand at 334.481 kb on + strand at 334.482 kb on - strand at 334.482 kb on - strand at 334.534 kb on - strand, within ABZR87_RS17690 at 334.534 kb on - strand, within ABZR87_RS17690 at 334.651 kb on + strand, within ABZR87_RS17690 at 334.651 kb on + strand, within ABZR87_RS17690 at 334.810 kb on + strand, within ABZR87_RS17690 at 334.810 kb on + strand, within ABZR87_RS17690 at 334.834 kb on + strand, within ABZR87_RS17690 at 334.834 kb on + strand, within ABZR87_RS17690 at 334.835 kb on - strand, within ABZR87_RS17690 at 334.835 kb on - strand, within ABZR87_RS17690 at 334.895 kb on + strand at 334.896 kb on - strand at 334.933 kb on + strand at 334.933 kb on + strand at 334.933 kb on + strand at 334.934 kb on - strand at 334.934 kb on - strand at 334.934 kb on - strand at 334.934 kb on - strand at 334.934 kb on - strand at 334.934 kb on - strand at 334.934 kb on - strand at 334.935 kb on + strand at 334.935 kb on + strand at 334.936 kb on - strand at 334.936 kb on - strand at 334.986 kb on + strand at 334.987 kb on - strand at 335.014 kb on - strand at 335.014 kb on - strand at 335.014 kb on - strand at 335.053 kb on + strand at 335.053 kb on + strand at 335.053 kb on + strand at 335.053 kb on + strand at 335.053 kb on + strand at 335.054 kb on - strand at 335.054 kb on - strand at 335.054 kb on - strand at 335.054 kb on - strand at 335.054 kb on - strand at 335.285 kb on - strand, within ABZR87_RS17695 at 335.563 kb on + strand, within ABZR87_RS17695 at 335.632 kb on + strand at 335.632 kb on + strand at 335.857 kb on + strand at 335.858 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction root EcoFAB sample 2; outgrowth in LB remove 333,510 + +1.6 333,511 - -0.2 333,511 - +0.1 333,649 + ABZR87_RS17685 0.23 -1.0 333,650 - ABZR87_RS17685 0.23 +0.3 333,756 + ABZR87_RS17685 0.35 -1.2 333,869 - ABZR87_RS17685 0.48 -2.0 334,006 + ABZR87_RS17685 0.64 -0.6 334,006 + ABZR87_RS17685 0.64 -1.1 334,021 + ABZR87_RS17685 0.65 -0.3 334,021 + ABZR87_RS17685 0.65 -0.6 334,021 + ABZR87_RS17685 0.65 -1.1 334,021 + ABZR87_RS17685 0.65 -0.3 334,021 + ABZR87_RS17685 0.65 -0.5 334,022 - ABZR87_RS17685 0.65 +0.7 334,022 - ABZR87_RS17685 0.65 +0.7 334,022 - ABZR87_RS17685 0.65 -0.3 334,284 - +0.8 334,305 + +0.3 334,306 - +0.3 334,306 - +0.8 334,306 - +1.8 334,360 + +2.4 334,381 - +0.2 334,405 - -0.3 334,436 + -1.7 334,436 + +0.6 334,436 + -2.7 334,436 + +0.9 334,436 + -0.5 334,436 + -0.3 334,436 + -0.4 334,437 - -1.9 334,437 - -1.7 334,437 - +1.6 334,437 - -0.8 334,437 - -2.0 334,437 - +0.1 334,437 - -1.4 334,437 - -1.2 334,438 + -1.8 334,438 + -0.2 334,438 + -0.6 334,438 + +0.5 334,438 + +1.9 334,439 - +2.4 334,439 - +4.0 334,439 - -0.1 334,439 - -1.0 334,455 - +0.7 334,455 - -0.9 334,481 + +0.8 334,481 + +0.2 334,481 + +0.6 334,481 + -1.3 334,481 + -1.9 334,482 - +1.7 334,482 - +0.7 334,534 - ABZR87_RS17690 0.21 +0.1 334,534 - ABZR87_RS17690 0.21 -0.5 334,651 + ABZR87_RS17690 0.47 +0.3 334,651 + ABZR87_RS17690 0.47 -0.6 334,810 + ABZR87_RS17690 0.84 -1.8 334,810 + ABZR87_RS17690 0.84 +0.4 334,834 + ABZR87_RS17690 0.89 -1.3 334,834 + ABZR87_RS17690 0.89 +0.3 334,835 - ABZR87_RS17690 0.89 +2.6 334,835 - ABZR87_RS17690 0.89 +0.3 334,895 + -2.1 334,896 - +0.9 334,933 + -2.0 334,933 + -0.7 334,933 + +1.2 334,934 - -0.2 334,934 - -2.1 334,934 - +0.8 334,934 - +0.2 334,934 - -0.8 334,934 - +0.6 334,934 - -0.3 334,935 + -0.2 334,935 + -0.7 334,936 - +0.4 334,936 - -1.8 334,986 + -0.4 334,987 - +0.6 335,014 - +1.0 335,014 - +0.2 335,014 - -0.4 335,053 + +0.3 335,053 + -1.1 335,053 + -1.4 335,053 + +0.7 335,053 + -0.3 335,054 - +0.3 335,054 - +1.6 335,054 - +0.6 335,054 - +0.9 335,054 - -1.1 335,285 - ABZR87_RS17695 0.45 -2.5 335,563 + ABZR87_RS17695 0.89 -0.7 335,632 + +1.2 335,632 + -0.2 335,857 + +0.1 335,858 - +0.8
Or see this region's nucleotide sequence