Experiment: root EcoFAB sample 2; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS17670 and ABZR87_RS17675 overlap by 4 nucleotides ABZR87_RS17675 and ABZR87_RS17680 are separated by 161 nucleotides ABZR87_RS17680 and ABZR87_RS17685 are separated by 4 nucleotides
ABZR87_RS17670: ABZR87_RS17670 - threo-3-hydroxy-L-aspartate ammonia-lyase, at 331,033 to 332,010
_RS17670
ABZR87_RS17675: ABZR87_RS17675 - RidA family protein, at 332,007 to 332,396
_RS17675
ABZR87_RS17680: ABZR87_RS17680 - flagellar brake protein, at 332,558 to 333,439
_RS17680
ABZR87_RS17685: ABZR87_RS17685 - LysR family transcriptional regulator, at 333,444 to 334,328
_RS17685
Position (kb) 332
333
334 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 331.707 kb on + strand, within ABZR87_RS17670 at 331.708 kb on - strand, within ABZR87_RS17670 at 331.708 kb on - strand, within ABZR87_RS17670 at 332.022 kb on + strand at 332.022 kb on + strand at 332.061 kb on + strand, within ABZR87_RS17675 at 332.062 kb on - strand, within ABZR87_RS17675 at 332.062 kb on - strand, within ABZR87_RS17675 at 332.062 kb on - strand, within ABZR87_RS17675 at 332.062 kb on - strand, within ABZR87_RS17675 at 332.244 kb on + strand, within ABZR87_RS17675 at 332.244 kb on + strand, within ABZR87_RS17675 at 332.244 kb on + strand, within ABZR87_RS17675 at 332.245 kb on - strand, within ABZR87_RS17675 at 332.245 kb on - strand, within ABZR87_RS17675 at 332.245 kb on - strand, within ABZR87_RS17675 at 332.353 kb on - strand, within ABZR87_RS17675 at 332.491 kb on + strand at 332.820 kb on + strand, within ABZR87_RS17680 at 332.821 kb on - strand, within ABZR87_RS17680 at 332.882 kb on + strand, within ABZR87_RS17680 at 332.882 kb on + strand, within ABZR87_RS17680 at 332.882 kb on + strand, within ABZR87_RS17680 at 332.883 kb on - strand, within ABZR87_RS17680 at 332.883 kb on - strand, within ABZR87_RS17680 at 332.883 kb on - strand, within ABZR87_RS17680 at 332.883 kb on - strand, within ABZR87_RS17680 at 332.884 kb on + strand, within ABZR87_RS17680 at 332.884 kb on + strand, within ABZR87_RS17680 at 332.885 kb on - strand, within ABZR87_RS17680 at 332.885 kb on - strand, within ABZR87_RS17680 at 333.041 kb on + strand, within ABZR87_RS17680 at 333.042 kb on - strand, within ABZR87_RS17680 at 333.263 kb on + strand, within ABZR87_RS17680 at 333.264 kb on - strand, within ABZR87_RS17680 at 333.264 kb on - strand, within ABZR87_RS17680 at 333.510 kb on + strand at 333.511 kb on - strand at 333.511 kb on - strand at 333.649 kb on + strand, within ABZR87_RS17685 at 333.650 kb on - strand, within ABZR87_RS17685 at 333.756 kb on + strand, within ABZR87_RS17685 at 333.869 kb on - strand, within ABZR87_RS17685 at 334.006 kb on + strand, within ABZR87_RS17685 at 334.006 kb on + strand, within ABZR87_RS17685 at 334.021 kb on + strand, within ABZR87_RS17685 at 334.021 kb on + strand, within ABZR87_RS17685 at 334.021 kb on + strand, within ABZR87_RS17685 at 334.021 kb on + strand, within ABZR87_RS17685 at 334.021 kb on + strand, within ABZR87_RS17685 at 334.022 kb on - strand, within ABZR87_RS17685 at 334.022 kb on - strand, within ABZR87_RS17685 at 334.022 kb on - strand, within ABZR87_RS17685 at 334.284 kb on - strand at 334.305 kb on + strand at 334.306 kb on - strand at 334.306 kb on - strand at 334.306 kb on - strand at 334.360 kb on + strand at 334.381 kb on - strand at 334.405 kb on - strand at 334.436 kb on + strand at 334.436 kb on + strand at 334.436 kb on + strand at 334.436 kb on + strand at 334.436 kb on + strand at 334.436 kb on + strand at 334.436 kb on + strand at 334.437 kb on - strand at 334.437 kb on - strand at 334.437 kb on - strand at 334.437 kb on - strand at 334.437 kb on - strand at 334.437 kb on - strand at 334.437 kb on - strand at 334.437 kb on - strand at 334.438 kb on + strand at 334.438 kb on + strand at 334.438 kb on + strand at 334.438 kb on + strand at 334.438 kb on + strand at 334.439 kb on - strand at 334.439 kb on - strand at 334.439 kb on - strand at 334.439 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction root EcoFAB sample 2; outgrowth in LB remove 331,707 + ABZR87_RS17670 0.69 +0.5 331,708 - ABZR87_RS17670 0.69 +0.5 331,708 - ABZR87_RS17670 0.69 +0.1 332,022 + -0.1 332,022 + +0.1 332,061 + ABZR87_RS17675 0.14 -0.3 332,062 - ABZR87_RS17675 0.14 +0.1 332,062 - ABZR87_RS17675 0.14 -1.1 332,062 - ABZR87_RS17675 0.14 -0.2 332,062 - ABZR87_RS17675 0.14 -1.2 332,244 + ABZR87_RS17675 0.61 -2.4 332,244 + ABZR87_RS17675 0.61 -1.2 332,244 + ABZR87_RS17675 0.61 -1.4 332,245 - ABZR87_RS17675 0.61 +1.0 332,245 - ABZR87_RS17675 0.61 +0.0 332,245 - ABZR87_RS17675 0.61 -1.4 332,353 - ABZR87_RS17675 0.89 -0.8 332,491 + -1.4 332,820 + ABZR87_RS17680 0.30 -0.4 332,821 - ABZR87_RS17680 0.30 +0.0 332,882 + ABZR87_RS17680 0.37 +1.1 332,882 + ABZR87_RS17680 0.37 +0.6 332,882 + ABZR87_RS17680 0.37 +0.3 332,883 - ABZR87_RS17680 0.37 -0.0 332,883 - ABZR87_RS17680 0.37 -0.7 332,883 - ABZR87_RS17680 0.37 +1.0 332,883 - ABZR87_RS17680 0.37 -1.0 332,884 + ABZR87_RS17680 0.37 -0.6 332,884 + ABZR87_RS17680 0.37 -0.6 332,885 - ABZR87_RS17680 0.37 +0.4 332,885 - ABZR87_RS17680 0.37 -0.6 333,041 + ABZR87_RS17680 0.55 +1.9 333,042 - ABZR87_RS17680 0.55 -1.7 333,263 + ABZR87_RS17680 0.80 -1.6 333,264 - ABZR87_RS17680 0.80 -0.4 333,264 - ABZR87_RS17680 0.80 -0.7 333,510 + +1.6 333,511 - -0.2 333,511 - +0.1 333,649 + ABZR87_RS17685 0.23 -1.0 333,650 - ABZR87_RS17685 0.23 +0.3 333,756 + ABZR87_RS17685 0.35 -1.2 333,869 - ABZR87_RS17685 0.48 -2.0 334,006 + ABZR87_RS17685 0.64 -0.6 334,006 + ABZR87_RS17685 0.64 -1.1 334,021 + ABZR87_RS17685 0.65 -0.3 334,021 + ABZR87_RS17685 0.65 -0.6 334,021 + ABZR87_RS17685 0.65 -1.1 334,021 + ABZR87_RS17685 0.65 -0.3 334,021 + ABZR87_RS17685 0.65 -0.5 334,022 - ABZR87_RS17685 0.65 +0.7 334,022 - ABZR87_RS17685 0.65 +0.7 334,022 - ABZR87_RS17685 0.65 -0.3 334,284 - +0.8 334,305 + +0.3 334,306 - +0.3 334,306 - +0.8 334,306 - +1.8 334,360 + +2.4 334,381 - +0.2 334,405 - -0.3 334,436 + -1.7 334,436 + +0.6 334,436 + -2.7 334,436 + +0.9 334,436 + -0.5 334,436 + -0.3 334,436 + -0.4 334,437 - -1.9 334,437 - -1.7 334,437 - +1.6 334,437 - -0.8 334,437 - -2.0 334,437 - +0.1 334,437 - -1.4 334,437 - -1.2 334,438 + -1.8 334,438 + -0.2 334,438 + -0.6 334,438 + +0.5 334,438 + +1.9 334,439 - +2.4 334,439 - +4.0 334,439 - -0.1 334,439 - -1.0
Or see this region's nucleotide sequence