Experiment: root EcoFAB sample 2; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS17175 and ABZR87_RS17180 are separated by 225 nucleotides ABZR87_RS17180 and ABZR87_RS17185 are separated by 118 nucleotides
ABZR87_RS17175: ABZR87_RS17175 - sensor histidine kinase, at 198,389 to 199,774
_RS17175
ABZR87_RS17180: ABZR87_RS17180 - class I SAM-dependent methyltransferase, at 200,000 to 200,752
_RS17180
ABZR87_RS17185: ABZR87_RS17185 - amidohydrolase, at 200,871 to 201,791
_RS17185
Position (kb) 199
200
201 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 199.024 kb on - strand, within ABZR87_RS17175 at 199.084 kb on + strand, within ABZR87_RS17175 at 199.085 kb on - strand, within ABZR87_RS17175 at 199.085 kb on - strand, within ABZR87_RS17175 at 199.120 kb on - strand, within ABZR87_RS17175 at 199.120 kb on - strand, within ABZR87_RS17175 at 199.215 kb on + strand, within ABZR87_RS17175 at 199.216 kb on - strand, within ABZR87_RS17175 at 199.228 kb on - strand, within ABZR87_RS17175 at 199.228 kb on - strand, within ABZR87_RS17175 at 199.320 kb on + strand, within ABZR87_RS17175 at 199.321 kb on - strand, within ABZR87_RS17175 at 199.366 kb on + strand, within ABZR87_RS17175 at 199.367 kb on - strand, within ABZR87_RS17175 at 199.482 kb on + strand, within ABZR87_RS17175 at 199.482 kb on + strand, within ABZR87_RS17175 at 199.483 kb on - strand, within ABZR87_RS17175 at 199.542 kb on + strand, within ABZR87_RS17175 at 199.542 kb on + strand, within ABZR87_RS17175 at 199.542 kb on + strand, within ABZR87_RS17175 at 199.543 kb on - strand, within ABZR87_RS17175 at 199.543 kb on - strand, within ABZR87_RS17175 at 199.543 kb on - strand, within ABZR87_RS17175 at 199.719 kb on + strand at 199.719 kb on + strand at 199.719 kb on + strand at 199.719 kb on + strand at 199.729 kb on - strand at 199.770 kb on + strand at 199.770 kb on + strand at 199.770 kb on + strand at 199.770 kb on + strand at 199.770 kb on + strand at 199.770 kb on + strand at 199.771 kb on - strand at 199.771 kb on - strand at 199.771 kb on - strand at 199.771 kb on - strand at 199.771 kb on - strand at 199.862 kb on + strand at 199.862 kb on + strand at 199.862 kb on + strand at 199.862 kb on + strand at 199.862 kb on + strand at 199.926 kb on + strand at 199.927 kb on - strand at 199.927 kb on - strand at 199.968 kb on + strand at 200.061 kb on + strand at 200.061 kb on + strand at 200.062 kb on - strand at 200.238 kb on + strand, within ABZR87_RS17180 at 200.246 kb on + strand, within ABZR87_RS17180 at 200.246 kb on + strand, within ABZR87_RS17180 at 200.246 kb on + strand, within ABZR87_RS17180 at 200.247 kb on - strand, within ABZR87_RS17180 at 200.303 kb on + strand, within ABZR87_RS17180 at 200.303 kb on + strand, within ABZR87_RS17180 at 200.304 kb on - strand, within ABZR87_RS17180 at 200.391 kb on + strand, within ABZR87_RS17180 at 200.547 kb on + strand, within ABZR87_RS17180 at 200.548 kb on - strand, within ABZR87_RS17180 at 200.701 kb on - strand at 200.764 kb on - strand at 200.764 kb on - strand at 200.793 kb on + strand at 200.793 kb on + strand at 200.793 kb on + strand at 200.794 kb on - strand at 200.794 kb on - strand at 200.794 kb on - strand at 200.861 kb on + strand at 200.861 kb on + strand at 200.861 kb on + strand at 200.861 kb on + strand at 200.861 kb on + strand at 200.861 kb on + strand at 200.862 kb on - strand at 200.862 kb on - strand at 200.862 kb on - strand at 200.862 kb on - strand at 200.971 kb on + strand, within ABZR87_RS17185 at 200.971 kb on + strand, within ABZR87_RS17185 at 201.499 kb on + strand, within ABZR87_RS17185 at 201.500 kb on - strand, within ABZR87_RS17185 at 201.500 kb on - strand, within ABZR87_RS17185 at 201.500 kb on - strand, within ABZR87_RS17185 at 201.598 kb on + strand, within ABZR87_RS17185 at 201.598 kb on + strand, within ABZR87_RS17185 at 201.598 kb on + strand, within ABZR87_RS17185 at 201.598 kb on + strand, within ABZR87_RS17185 at 201.599 kb on - strand, within ABZR87_RS17185 at 201.599 kb on - strand, within ABZR87_RS17185 at 201.599 kb on - strand, within ABZR87_RS17185 at 201.599 kb on - strand, within ABZR87_RS17185 at 201.599 kb on - strand, within ABZR87_RS17185 at 201.648 kb on + strand, within ABZR87_RS17185 at 201.648 kb on + strand, within ABZR87_RS17185 at 201.649 kb on - strand, within ABZR87_RS17185 at 201.747 kb on + strand at 201.747 kb on + strand at 201.747 kb on + strand at 201.747 kb on + strand at 201.747 kb on + strand at 201.748 kb on - strand at 201.748 kb on - strand at 201.748 kb on - strand at 201.748 kb on - strand at 201.748 kb on - strand at 201.748 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction root EcoFAB sample 2; outgrowth in LB remove 199,024 - ABZR87_RS17175 0.46 -0.8 199,084 + ABZR87_RS17175 0.50 -2.4 199,085 - ABZR87_RS17175 0.50 +0.2 199,085 - ABZR87_RS17175 0.50 -2.4 199,120 - ABZR87_RS17175 0.53 -3.1 199,120 - ABZR87_RS17175 0.53 +0.2 199,215 + ABZR87_RS17175 0.60 -1.9 199,216 - ABZR87_RS17175 0.60 +0.9 199,228 - ABZR87_RS17175 0.61 +0.9 199,228 - ABZR87_RS17175 0.61 -1.4 199,320 + ABZR87_RS17175 0.67 +1.1 199,321 - ABZR87_RS17175 0.67 -0.1 199,366 + ABZR87_RS17175 0.70 +0.7 199,367 - ABZR87_RS17175 0.71 -0.7 199,482 + ABZR87_RS17175 0.79 -0.6 199,482 + ABZR87_RS17175 0.79 -0.2 199,483 - ABZR87_RS17175 0.79 -0.0 199,542 + ABZR87_RS17175 0.83 -0.2 199,542 + ABZR87_RS17175 0.83 -0.6 199,542 + ABZR87_RS17175 0.83 -0.1 199,543 - ABZR87_RS17175 0.83 +1.0 199,543 - ABZR87_RS17175 0.83 +0.1 199,543 - ABZR87_RS17175 0.83 +2.0 199,719 + +1.7 199,719 + -0.1 199,719 + -1.8 199,719 + +0.3 199,729 - -1.9 199,770 + +0.6 199,770 + -0.3 199,770 + -0.7 199,770 + -1.5 199,770 + -0.4 199,770 + +0.1 199,771 - -1.3 199,771 - -0.7 199,771 - +0.1 199,771 - -0.9 199,771 - -0.9 199,862 + -2.4 199,862 + -0.6 199,862 + -0.5 199,862 + +0.6 199,862 + +0.6 199,926 + -1.9 199,927 - -0.5 199,927 - -2.8 199,968 + +2.0 200,061 + +0.4 200,061 + +0.3 200,062 - -1.7 200,238 + ABZR87_RS17180 0.32 -0.2 200,246 + ABZR87_RS17180 0.33 +1.2 200,246 + ABZR87_RS17180 0.33 -0.5 200,246 + ABZR87_RS17180 0.33 +2.1 200,247 - ABZR87_RS17180 0.33 -1.5 200,303 + ABZR87_RS17180 0.40 -0.6 200,303 + ABZR87_RS17180 0.40 +1.4 200,304 - ABZR87_RS17180 0.40 +0.4 200,391 + ABZR87_RS17180 0.52 -0.4 200,547 + ABZR87_RS17180 0.73 +0.2 200,548 - ABZR87_RS17180 0.73 +0.6 200,701 - -0.0 200,764 - -0.3 200,764 - -1.1 200,793 + +0.0 200,793 + -0.8 200,793 + -1.8 200,794 - +0.1 200,794 - +0.4 200,794 - +1.8 200,861 + -2.5 200,861 + +0.1 200,861 + -1.3 200,861 + -0.5 200,861 + -0.7 200,861 + +2.0 200,862 - +0.1 200,862 - +0.7 200,862 - +0.6 200,862 - +1.9 200,971 + ABZR87_RS17185 0.11 -1.6 200,971 + ABZR87_RS17185 0.11 +0.0 201,499 + ABZR87_RS17185 0.68 -1.4 201,500 - ABZR87_RS17185 0.68 -0.5 201,500 - ABZR87_RS17185 0.68 -2.3 201,500 - ABZR87_RS17185 0.68 -2.0 201,598 + ABZR87_RS17185 0.79 -0.8 201,598 + ABZR87_RS17185 0.79 -1.0 201,598 + ABZR87_RS17185 0.79 -2.4 201,598 + ABZR87_RS17185 0.79 -1.9 201,599 - ABZR87_RS17185 0.79 -0.0 201,599 - ABZR87_RS17185 0.79 -0.8 201,599 - ABZR87_RS17185 0.79 -1.6 201,599 - ABZR87_RS17185 0.79 +3.2 201,599 - ABZR87_RS17185 0.79 -2.2 201,648 + ABZR87_RS17185 0.84 -2.8 201,648 + ABZR87_RS17185 0.84 -0.2 201,649 - ABZR87_RS17185 0.84 -0.7 201,747 + +1.2 201,747 + -0.1 201,747 + -0.5 201,747 + +2.1 201,747 + +1.3 201,748 - -0.5 201,748 - -0.7 201,748 - +0.6 201,748 - -1.6 201,748 - -0.2 201,748 - +0.7
Or see this region's nucleotide sequence