Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS15875

Experiment: root EcoFAB sample 2; outgrowth in LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	root EcoFAB sample 2; outgrowth in LB
3,351,581	+		ABZR87_RS15865	0.79	-1.5
3,351,582	-		ABZR87_RS15865	0.79	+0.7
3,351,753	-				+1.0
3,351,753	-				-1.0
3,351,753	-				-1.2
3,352,032	+		ABZR87_RS15870	0.24	-0.1
3,352,032	+		ABZR87_RS15870	0.24	+0.7
3,352,032	+		ABZR87_RS15870	0.24	-0.0
3,352,033	-		ABZR87_RS15870	0.24	-0.7
3,352,073	+		ABZR87_RS15870	0.31	-0.5
3,352,074	-		ABZR87_RS15870	0.32	+1.1
3,352,074	-		ABZR87_RS15870	0.32	+0.5
3,352,074	-		ABZR87_RS15870	0.32	-0.1
3,352,075	+		ABZR87_RS15870	0.32	-0.9
3,352,075	+		ABZR87_RS15870	0.32	+0.5
3,352,075	+		ABZR87_RS15870	0.32	-1.1
3,352,076	-		ABZR87_RS15870	0.32	+0.1
3,352,076	-		ABZR87_RS15870	0.32	-0.1
3,352,077	-		ABZR87_RS15870	0.32	+0.1
3,352,205	-		ABZR87_RS15870	0.55	+2.2
3,352,291	+		ABZR87_RS15870	0.70	+1.2
3,352,291	+		ABZR87_RS15870	0.70	+0.6
3,352,291	+		ABZR87_RS15870	0.70	-0.5
3,352,291	+		ABZR87_RS15870	0.70	-2.4
3,352,292	-		ABZR87_RS15870	0.70	-0.1
3,352,535	-				-1.8
3,352,547	-				-0.4
3,352,705	+				+1.0
3,352,730	+				+2.3
3,352,732	+				-1.9
3,352,732	+				+0.5
3,352,733	-				-0.3
3,352,733	-				+0.9
3,352,733	-				-0.3
3,352,744	+				+0.4
3,352,744	+				+1.9
3,352,745	-				+0.5
3,352,745	-				+0.6
3,352,745	-				+0.4
3,352,886	-				-0.2
3,352,886	-				-0.6
3,352,918	+				-0.2
3,352,919	-				+1.1
3,353,002	+		ABZR87_RS15875	0.12	-0.2
3,353,002	+		ABZR87_RS15875	0.12	+0.9
3,353,003	-		ABZR87_RS15875	0.12	+0.3
3,353,035	+		ABZR87_RS15875	0.12	-1.5
3,353,035	+		ABZR87_RS15875	0.12	-0.2
3,353,036	-		ABZR87_RS15875	0.12	+0.0
3,353,076	+		ABZR87_RS15875	0.13	-0.4
3,353,077	-		ABZR87_RS15875	0.13	+0.6
3,353,077	-		ABZR87_RS15875	0.13	+1.0
3,353,077	-		ABZR87_RS15875	0.13	+0.4
3,353,173	-		ABZR87_RS15875	0.16	+0.8
3,353,197	+		ABZR87_RS15875	0.16	+2.6
3,353,197	+		ABZR87_RS15875	0.16	-0.3
3,353,197	+		ABZR87_RS15875	0.16	+0.9
3,353,198	-		ABZR87_RS15875	0.16	-0.0
3,353,198	-		ABZR87_RS15875	0.16	-1.6
3,353,198	-		ABZR87_RS15875	0.16	+1.2
3,353,198	-		ABZR87_RS15875	0.16	-1.7
3,353,198	-		ABZR87_RS15875	0.16	-0.2
3,353,261	-		ABZR87_RS15875	0.18	+0.1
3,353,365	+		ABZR87_RS15875	0.20	-0.9
3,353,365	+		ABZR87_RS15875	0.20	+0.6
3,353,365	+		ABZR87_RS15875	0.20	+0.1
3,353,366	-		ABZR87_RS15875	0.20	+1.0
3,353,366	-		ABZR87_RS15875	0.20	+0.3
3,353,366	-		ABZR87_RS15875	0.20	+0.5
3,353,410	+		ABZR87_RS15875	0.22	+1.4
3,353,410	+		ABZR87_RS15875	0.22	+1.9
3,353,410	+		ABZR87_RS15875	0.22	+0.8
3,353,411	-		ABZR87_RS15875	0.22	-0.1
3,353,411	-		ABZR87_RS15875	0.22	-0.5
3,353,411	-		ABZR87_RS15875	0.22	+0.9
3,353,567	+		ABZR87_RS15875	0.25	+0.5
3,353,567	+		ABZR87_RS15875	0.25	-0.1
3,353,567	+		ABZR87_RS15875	0.25	+1.1
3,353,567	+		ABZR87_RS15875	0.25	+0.2
3,353,567	+		ABZR87_RS15875	0.25	+0.2
3,353,593	+		ABZR87_RS15875	0.26	-0.9
3,353,594	-		ABZR87_RS15875	0.26	+0.3
3,353,594	-		ABZR87_RS15875	0.26	-0.4
3,353,708	-		ABZR87_RS15875	0.29	-1.6
3,353,708	-		ABZR87_RS15875	0.29	+0.6
3,353,864	+		ABZR87_RS15875	0.33	+0.6
3,353,865	-		ABZR87_RS15875	0.33	-0.6
3,353,865	-		ABZR87_RS15875	0.33	-0.4
3,354,052	-		ABZR87_RS15875	0.37	-0.2
3,354,052	-		ABZR87_RS15875	0.37	-1.0
3,354,364	+		ABZR87_RS15875	0.45	-0.6
3,354,560	-		ABZR87_RS15875	0.50	-0.5
3,354,670	+		ABZR87_RS15875	0.52	-0.0
3,354,670	+		ABZR87_RS15875	0.52	+0.0
3,354,671	-		ABZR87_RS15875	0.52	+1.2
3,354,671	-		ABZR87_RS15875	0.52	+0.6
3,354,671	-		ABZR87_RS15875	0.52	+1.2
3,354,673	+		ABZR87_RS15875	0.52	-0.7
3,354,673	+		ABZR87_RS15875	0.52	+0.4
3,354,673	+		ABZR87_RS15875	0.52	+0.5
3,354,673	+		ABZR87_RS15875	0.52	+0.1
3,354,674	-		ABZR87_RS15875	0.52	-1.2
3,354,674	-		ABZR87_RS15875	0.52	+0.9
3,354,674	-		ABZR87_RS15875	0.52	+0.7
3,354,674	-		ABZR87_RS15875	0.52	-1.8
3,354,676	+		ABZR87_RS15875	0.52	+0.8
3,354,676	+		ABZR87_RS15875	0.52	+0.6
3,354,676	+		ABZR87_RS15875	0.52	+1.0
3,354,677	-		ABZR87_RS15875	0.53	+0.1
3,354,677	-		ABZR87_RS15875	0.53	+0.5
3,354,677	-		ABZR87_RS15875	0.53	+1.3
3,354,677	-		ABZR87_RS15875	0.53	-3.3
3,354,677	-		ABZR87_RS15875	0.53	+0.6
3,354,677	-		ABZR87_RS15875	0.53	+0.9
3,354,763	+		ABZR87_RS15875	0.55	+0.6
3,354,763	+		ABZR87_RS15875	0.55	+0.2
3,354,763	+		ABZR87_RS15875	0.55	-2.0
3,354,889	+		ABZR87_RS15875	0.58	-1.1
3,354,890	-		ABZR87_RS15875	0.58	+0.0
3,354,967	+		ABZR87_RS15875	0.60	-0.7
3,354,967	+		ABZR87_RS15875	0.60	-0.3
3,354,968	-		ABZR87_RS15875	0.60	+0.1
3,354,995	-		ABZR87_RS15875	0.60	+0.6
3,355,033	+		ABZR87_RS15875	0.61	+1.1
3,355,033	+		ABZR87_RS15875	0.61	-0.4
3,355,033	+		ABZR87_RS15875	0.61	+1.2
3,355,033	+		ABZR87_RS15875	0.61	+0.9
3,355,033	+		ABZR87_RS15875	0.61	-0.6
3,355,033	+		ABZR87_RS15875	0.61	+0.6
3,355,033	+		ABZR87_RS15875	0.61	+3.8
3,355,034	-		ABZR87_RS15875	0.61	+0.8
3,355,034	-		ABZR87_RS15875	0.61	+0.5
3,355,034	-		ABZR87_RS15875	0.61	-0.4
3,355,034	-		ABZR87_RS15875	0.61	+0.2
3,355,042	+		ABZR87_RS15875	0.61	-1.7
3,355,042	+		ABZR87_RS15875	0.61	+0.3
3,355,043	-		ABZR87_RS15875	0.61	-1.1
3,355,043	-		ABZR87_RS15875	0.61	+1.7
3,355,084	+		ABZR87_RS15875	0.62	+0.1
3,355,085	-		ABZR87_RS15875	0.62	+1.6
3,355,135	+		ABZR87_RS15875	0.64	+3.2
3,355,135	+		ABZR87_RS15875	0.64	-1.2
3,355,135	+		ABZR87_RS15875	0.64	-1.1
3,355,136	-		ABZR87_RS15875	0.64	+0.1
3,355,136	-		ABZR87_RS15875	0.64	+0.2
3,355,171	+		ABZR87_RS15875	0.65	+0.3
3,355,172	-		ABZR87_RS15875	0.65	-1.4
3,355,172	-		ABZR87_RS15875	0.65	-1.2
3,355,246	+		ABZR87_RS15875	0.66	-0.5
3,355,246	+		ABZR87_RS15875	0.66	-1.6
3,355,246	+		ABZR87_RS15875	0.66	-2.0
3,355,246	+		ABZR87_RS15875	0.66	+0.5
3,355,247	-		ABZR87_RS15875	0.66	-2.0
3,355,325	-		ABZR87_RS15875	0.68	+0.6
3,355,336	+		ABZR87_RS15875	0.69	+0.3
3,355,337	-		ABZR87_RS15875	0.69	-0.2
3,355,375	-		ABZR87_RS15875	0.70	+0.4
3,355,495	+		ABZR87_RS15875	0.73	+1.2
3,355,495	+		ABZR87_RS15875	0.73	+0.9
3,355,496	-		ABZR87_RS15875	0.73	-0.4
3,355,559	+		ABZR87_RS15875	0.74	+0.3
3,355,770	+		ABZR87_RS15875	0.79	+0.5
3,355,770	+		ABZR87_RS15875	0.79	+0.2
3,355,770	+		ABZR87_RS15875	0.79	+1.0
3,355,770	+		ABZR87_RS15875	0.79	+0.4
3,355,770	+		ABZR87_RS15875	0.79	+1.4
3,355,771	-		ABZR87_RS15875	0.79	+1.3
3,355,771	-		ABZR87_RS15875	0.79	+0.2
3,355,771	-		ABZR87_RS15875	0.79	-1.1
3,355,771	-		ABZR87_RS15875	0.79	-0.3
3,355,771	-		ABZR87_RS15875	0.79	-1.3
3,355,793	-		ABZR87_RS15875	0.80	-2.1
3,355,954	+		ABZR87_RS15875	0.84	-1.6
3,355,954	+		ABZR87_RS15875	0.84	+0.9
3,355,954	+		ABZR87_RS15875	0.84	-1.5
3,355,954	+		ABZR87_RS15875	0.84	+0.9
3,355,955	-		ABZR87_RS15875	0.84	+1.2
3,356,023	+		ABZR87_RS15875	0.85	+0.6
3,356,107	+		ABZR87_RS15875	0.87	-0.0
3,356,107	+		ABZR87_RS15875	0.87	-0.4
3,356,107	+		ABZR87_RS15875	0.87	+2.1
3,356,107	+		ABZR87_RS15875	0.87	+0.7
3,356,107	+		ABZR87_RS15875	0.87	-0.0
3,356,108	-		ABZR87_RS15875	0.88	-0.4
3,356,108	-		ABZR87_RS15875	0.88	+0.0
3,356,188	-		ABZR87_RS15875	0.89	-0.8
3,356,266	+				+2.2
3,356,266	+				+0.6
3,356,267	-				+0.1
3,356,389	+				+0.7
3,356,389	+				-0.3
3,356,389	+				-1.3
3,356,455	+				+0.2
3,356,456	-				+0.3
3,356,622	+				+1.8
3,356,622	+				+1.0
3,356,622	+				+0.3
3,356,623	-				-0.7
3,356,623	-				-0.5
3,356,623	-				-1.3
3,356,623	-				-0.4
3,356,630	+				-0.1
3,356,630	+				-0.1
3,356,630	+				-0.1
3,356,630	+				+0.4
3,356,630	+				+0.7
3,356,631	-				-0.2
3,356,631	-				-0.6
3,356,631	-				+0.2
3,356,631	-				+4.2
3,356,631	-				-1.3
3,356,765	+				-1.7
3,356,765	+				-0.4
3,356,765	+				-0.6
3,356,766	-				+1.8
3,356,766	-				-0.6
3,356,766	-				-1.3
3,356,768	+				+0.0
3,356,769	-				-0.6
3,356,843	+				-0.8
3,356,844	-				-0.9
3,356,844	-				-1.3
3,356,844	-				-0.8
3,356,844	-				+0.2
3,356,912	+		ABZR87_RS15880	0.11	+0.6
3,356,912	+		ABZR87_RS15880	0.11	-0.7
3,356,912	+		ABZR87_RS15880	0.11	-0.8
3,356,912	+		ABZR87_RS15880	0.11	-0.6
3,356,913	-		ABZR87_RS15880	0.11	-1.9
3,356,913	-		ABZR87_RS15880	0.11	+0.4
3,356,913	-		ABZR87_RS15880	0.11	-0.2
3,356,913	-		ABZR87_RS15880	0.11	+0.5
3,356,913	-		ABZR87_RS15880	0.11	-1.2
3,356,913	-		ABZR87_RS15880	0.11	+6.1
3,356,913	-		ABZR87_RS15880	0.11	+1.3
3,357,083	+		ABZR87_RS15880	0.17	+0.5
3,357,083	+		ABZR87_RS15880	0.17	+0.5
3,357,083	+		ABZR87_RS15880	0.17	+1.2
3,357,083	+		ABZR87_RS15880	0.17	-0.7
3,357,083	+		ABZR87_RS15880	0.17	+0.3
3,357,095	+		ABZR87_RS15880	0.17	+0.0
3,357,096	-		ABZR87_RS15880	0.17	-0.4
3,357,096	-		ABZR87_RS15880	0.17	+0.3
3,357,096	-		ABZR87_RS15880	0.17	+0.7
3,357,125	+		ABZR87_RS15880	0.18	+0.6
3,357,126	-		ABZR87_RS15880	0.18	-1.0
3,357,126	-		ABZR87_RS15880	0.18	-0.7
3,357,126	-		ABZR87_RS15880	0.18	+1.1
3,357,131	+		ABZR87_RS15880	0.18	+0.3
3,357,169	-		ABZR87_RS15880	0.20	+0.5
3,357,176	+		ABZR87_RS15880	0.20	-0.4
3,357,176	+		ABZR87_RS15880	0.20	-0.3
3,357,176	+		ABZR87_RS15880	0.20	+1.3
3,357,177	-		ABZR87_RS15880	0.20	-1.2
3,357,185	+		ABZR87_RS15880	0.20	-1.6
3,357,185	+		ABZR87_RS15880	0.20	-1.7
3,357,185	+		ABZR87_RS15880	0.20	-0.4
3,357,186	-		ABZR87_RS15880	0.20	+0.4
3,357,186	-		ABZR87_RS15880	0.20	+5.0
3,357,186	-		ABZR87_RS15880	0.20	+0.1
3,357,188	+		ABZR87_RS15880	0.20	+0.7
3,357,188	+		ABZR87_RS15880	0.20	-1.2
3,357,188	+		ABZR87_RS15880	0.20	-1.1
3,357,188	+		ABZR87_RS15880	0.20	-2.4
3,357,188	+		ABZR87_RS15880	0.20	-1.3
3,357,189	-		ABZR87_RS15880	0.20	-0.4
3,357,189	-		ABZR87_RS15880	0.20	-1.1
3,357,189	-		ABZR87_RS15880	0.20	-1.3
3,357,189	-		ABZR87_RS15880	0.20	-0.5
3,357,189	-		ABZR87_RS15880	0.20	-0.7
3,357,260	+		ABZR87_RS15880	0.23	+0.2
3,357,260	+		ABZR87_RS15880	0.23	+0.8
3,357,261	-		ABZR87_RS15880	0.23	+1.3
3,357,261	-		ABZR87_RS15880	0.23	+0.1
3,357,263	+		ABZR87_RS15880	0.23	-0.5
3,357,263	+		ABZR87_RS15880	0.23	+0.4
3,357,263	+		ABZR87_RS15880	0.23	+1.2
3,357,285	+		ABZR87_RS15880	0.24	-0.0
3,357,285	+		ABZR87_RS15880	0.24	+0.6
3,357,285	+		ABZR87_RS15880	0.24	-0.4
3,357,285	+		ABZR87_RS15880	0.24	-1.0
3,357,285	+		ABZR87_RS15880	0.24	+0.9
3,357,285	+		ABZR87_RS15880	0.24	+1.0
3,357,286	-		ABZR87_RS15880	0.24	+0.1
3,357,286	-		ABZR87_RS15880	0.24	-1.5
3,357,288	-		ABZR87_RS15880	0.24	-0.9
3,357,288	-		ABZR87_RS15880	0.24	+2.3
3,357,323	+		ABZR87_RS15880	0.25	-0.2
3,357,323	+		ABZR87_RS15880	0.25	+1.5
3,357,598	-		ABZR87_RS15880	0.35	+0.7