Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS13900

Experiment: root EcoFAB sample 2; outgrowth in LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	root EcoFAB sample 2; outgrowth in LB
2,929,680	+		ABZR87_RS13895	0.40	-0.0
2,929,680	+		ABZR87_RS13895	0.40	-0.9
2,929,716	+		ABZR87_RS13895	0.42	-0.9
2,929,716	+		ABZR87_RS13895	0.42	+0.3
2,929,734	-		ABZR87_RS13895	0.43	-1.7
2,929,734	-		ABZR87_RS13895	0.43	-0.8
2,929,734	-		ABZR87_RS13895	0.43	-0.8
2,929,740	+		ABZR87_RS13895	0.44	+1.0
2,929,740	+		ABZR87_RS13895	0.44	+1.7
2,929,740	+		ABZR87_RS13895	0.44	-0.7
2,929,741	-		ABZR87_RS13895	0.44	-1.7
2,929,801	-		ABZR87_RS13895	0.48	-0.4
2,929,944	+		ABZR87_RS13895	0.57	-0.8
2,929,944	+		ABZR87_RS13895	0.57	-0.4
2,929,944	+		ABZR87_RS13895	0.57	-0.2
2,929,944	+		ABZR87_RS13895	0.57	+1.4
2,929,945	-		ABZR87_RS13895	0.57	-2.8
2,929,945	-		ABZR87_RS13895	0.57	-0.3
2,930,033	-		ABZR87_RS13895	0.63	-0.3
2,930,065	-		ABZR87_RS13895	0.65	-0.7
2,930,065	-		ABZR87_RS13895	0.65	+1.1
2,930,085	+		ABZR87_RS13895	0.66	+1.0
2,930,086	-		ABZR87_RS13895	0.66	-2.0
2,930,095	+		ABZR87_RS13895	0.67	-1.1
2,930,096	-		ABZR87_RS13895	0.67	+1.2
2,930,096	-		ABZR87_RS13895	0.67	-0.2
2,930,096	-		ABZR87_RS13895	0.67	-0.6
2,930,175	+		ABZR87_RS13895	0.72	-0.1
2,930,176	-		ABZR87_RS13895	0.72	-1.7
2,930,181	+		ABZR87_RS13895	0.73	-0.6
2,930,181	+		ABZR87_RS13895	0.73	-0.1
2,930,181	+		ABZR87_RS13895	0.73	+0.1
2,930,181	+		ABZR87_RS13895	0.73	+1.0
2,930,181	+		ABZR87_RS13895	0.73	+1.1
2,930,181	+		ABZR87_RS13895	0.73	+0.5
2,930,182	-		ABZR87_RS13895	0.73	-0.2
2,930,199	+		ABZR87_RS13895	0.74	-0.8
2,930,200	-		ABZR87_RS13895	0.74	+1.2
2,930,200	-		ABZR87_RS13895	0.74	-1.3
2,930,200	-		ABZR87_RS13895	0.74	-1.0
2,930,200	-		ABZR87_RS13895	0.74	-0.5
2,930,256	+		ABZR87_RS13895	0.78	-0.1
2,930,256	+		ABZR87_RS13895	0.78	-0.2
2,930,256	+		ABZR87_RS13895	0.78	-0.5
2,930,257	-		ABZR87_RS13895	0.78	+0.8
2,930,257	-		ABZR87_RS13895	0.78	+0.5
2,930,257	-		ABZR87_RS13895	0.78	+0.8
2,930,295	-		ABZR87_RS13895	0.80	-1.8
2,930,344	+		ABZR87_RS13895	0.83	+1.4
2,930,344	+		ABZR87_RS13895	0.83	+0.0
2,930,344	+		ABZR87_RS13895	0.83	-1.8
2,930,363	-		ABZR87_RS13895	0.85	+0.7
2,930,454	+				+1.2
2,930,455	-				+0.7
2,930,502	-				-0.9
2,930,507	-				-2.7
2,930,508	+				-1.0
2,930,529	+				-0.9
2,930,529	+				+0.0
2,930,529	+				-0.8
2,930,529	+				-0.9
2,930,530	-				-0.2
2,930,530	-				-0.9
2,930,530	-				-1.9
2,930,530	-				-2.1
2,930,530	-				-0.2
2,930,653	+				-0.4
2,930,654	-				+1.1
2,930,654	-				-0.5
2,930,670	-				-0.6
2,930,741	+				+0.4
2,930,824	+		ABZR87_RS13900	0.11	+0.5
2,930,852	+		ABZR87_RS13900	0.13	+0.0
2,930,852	+		ABZR87_RS13900	0.13	+1.8
2,930,968	+		ABZR87_RS13900	0.20	+0.7
2,930,968	+		ABZR87_RS13900	0.20	-0.2
2,931,018	+		ABZR87_RS13900	0.24	-0.6
2,931,018	+		ABZR87_RS13900	0.24	+0.5
2,931,019	-		ABZR87_RS13900	0.24	+1.1
2,931,019	-		ABZR87_RS13900	0.24	+0.2
2,931,155	+		ABZR87_RS13900	0.33	+1.4
2,931,155	+		ABZR87_RS13900	0.33	-1.7
2,931,155	+		ABZR87_RS13900	0.33	-1.2
2,931,166	+		ABZR87_RS13900	0.34	+0.9
2,931,176	+		ABZR87_RS13900	0.35	-0.1
2,931,177	-		ABZR87_RS13900	0.35	-0.0
2,931,177	-		ABZR87_RS13900	0.35	-0.7
2,931,177	-		ABZR87_RS13900	0.35	-2.1
2,931,306	-		ABZR87_RS13900	0.43	-0.2
2,931,306	-		ABZR87_RS13900	0.43	-0.9
2,931,330	-		ABZR87_RS13900	0.45	+0.1
2,931,389	+		ABZR87_RS13900	0.49	+1.5
2,931,390	-		ABZR87_RS13900	0.49	-0.8
2,931,390	-		ABZR87_RS13900	0.49	+0.1
2,931,390	-		ABZR87_RS13900	0.49	-2.0
2,931,421	+		ABZR87_RS13900	0.51	+0.4
2,931,422	+		ABZR87_RS13900	0.51	+0.9
2,931,513	-		ABZR87_RS13900	0.57	-1.7
2,931,536	+		ABZR87_RS13900	0.59	+0.2
2,931,536	+		ABZR87_RS13900	0.59	+0.6
2,931,537	-		ABZR87_RS13900	0.59	+0.7
2,931,537	-		ABZR87_RS13900	0.59	+1.2
2,931,537	-		ABZR87_RS13900	0.59	+1.1
2,931,537	-		ABZR87_RS13900	0.59	+0.0
2,931,546	+		ABZR87_RS13900	0.60	+0.8
2,931,546	+		ABZR87_RS13900	0.60	-0.7
2,931,547	-		ABZR87_RS13900	0.60	-0.5
2,931,547	-		ABZR87_RS13900	0.60	+0.5
2,931,547	-		ABZR87_RS13900	0.60	-2.2
2,931,548	+		ABZR87_RS13900	0.60	+0.1
2,931,549	-		ABZR87_RS13900	0.60	+0.3
2,931,621	+		ABZR87_RS13900	0.65	-0.1
2,931,621	+		ABZR87_RS13900	0.65	+0.3
2,931,622	-		ABZR87_RS13900	0.65	+1.0
2,931,652	+		ABZR87_RS13900	0.67	-2.0
2,931,652	+		ABZR87_RS13900	0.67	+2.3
2,931,652	+		ABZR87_RS13900	0.67	-0.8
2,931,652	+		ABZR87_RS13900	0.67	-1.1
2,931,653	-		ABZR87_RS13900	0.67	-0.6
2,931,653	-		ABZR87_RS13900	0.67	-1.9
2,931,653	-		ABZR87_RS13900	0.67	+0.3
2,931,653	-		ABZR87_RS13900	0.67	+0.2
2,931,677	+		ABZR87_RS13900	0.69	+2.4
2,931,677	+		ABZR87_RS13900	0.69	-1.7
2,931,678	-		ABZR87_RS13900	0.69	-0.9
2,931,687	+		ABZR87_RS13900	0.69	+0.1
2,931,688	-		ABZR87_RS13900	0.69	-0.5
2,931,748	-		ABZR87_RS13900	0.73	+1.3
2,931,768	-		ABZR87_RS13900	0.75	-2.2
2,931,773	+		ABZR87_RS13900	0.75	+0.3
2,931,773	+		ABZR87_RS13900	0.75	+2.0
2,931,773	+		ABZR87_RS13900	0.75	+1.6
2,931,773	+		ABZR87_RS13900	0.75	+0.4
2,931,774	-		ABZR87_RS13900	0.75	+0.2
2,931,774	-		ABZR87_RS13900	0.75	-0.3
2,931,791	+		ABZR87_RS13900	0.76	-0.4
2,931,791	+		ABZR87_RS13900	0.76	-0.4
2,931,791	+		ABZR87_RS13900	0.76	-0.3
2,931,791	+		ABZR87_RS13900	0.76	-2.6
2,931,792	-		ABZR87_RS13900	0.76	-0.9
2,931,798	-		ABZR87_RS13900	0.77	+0.7
2,931,936	+		ABZR87_RS13900	0.86	+0.0
2,931,936	+		ABZR87_RS13900	0.86	-0.1
2,932,046	+				-0.9
2,932,046	+				-1.9
2,932,046	+				-2.2
2,932,046	+				+0.6
2,932,047	-				-1.9
2,932,158	+				+2.6
2,932,158	+				+1.1
2,932,159	-				-1.3
2,932,159	-				-0.6
2,932,328	+				-0.8
2,932,328	+				-0.1
2,932,328	+				+1.1
2,932,328	+				+2.9
2,932,329	-				+0.1
2,932,440	+				+0.3
2,932,441	-				+0.3
2,932,441	-				-1.1
2,932,449	+				-0.9
2,932,491	+		ABZR87_RS13905	0.11	-0.9
2,932,491	+		ABZR87_RS13905	0.11	-0.4
2,932,491	+		ABZR87_RS13905	0.11	-0.3
2,932,495	-		ABZR87_RS13905	0.11	+0.2
2,932,528	+		ABZR87_RS13905	0.12	-0.1
2,932,528	+		ABZR87_RS13905	0.12	-0.5
2,932,529	-		ABZR87_RS13905	0.12	-0.4
2,932,537	-		ABZR87_RS13905	0.13	-0.3
2,932,537	-		ABZR87_RS13905	0.13	-0.6
2,932,588	+		ABZR87_RS13905	0.15	+0.9
2,932,698	+		ABZR87_RS13905	0.19	-0.4
2,932,699	-		ABZR87_RS13905	0.19	+1.6
2,932,737	+		ABZR87_RS13905	0.21	+0.9
2,932,737	+		ABZR87_RS13905	0.21	-0.2
2,932,737	+		ABZR87_RS13905	0.21	+0.2
2,932,737	+		ABZR87_RS13905	0.21	-0.3
2,932,738	-		ABZR87_RS13905	0.21	-1.3
2,932,738	-		ABZR87_RS13905	0.21	+1.3
2,932,798	-		ABZR87_RS13905	0.23	+0.0
2,932,813	+		ABZR87_RS13905	0.24	+0.0
2,932,813	+		ABZR87_RS13905	0.24	+1.8
2,932,814	-		ABZR87_RS13905	0.24	-0.2
2,932,814	-		ABZR87_RS13905	0.24	-0.2
2,932,814	-		ABZR87_RS13905	0.24	+0.9
2,932,851	+		ABZR87_RS13905	0.26	+0.3
2,932,908	+		ABZR87_RS13905	0.28	+2.3
2,932,909	-		ABZR87_RS13905	0.28	+0.0
2,932,909	-		ABZR87_RS13905	0.28	-0.8
2,933,076	+		ABZR87_RS13905	0.35	+0.4
2,933,076	+		ABZR87_RS13905	0.35	-0.3
2,933,076	+		ABZR87_RS13905	0.35	+1.1
2,933,077	-		ABZR87_RS13905	0.35	-0.3
2,933,077	-		ABZR87_RS13905	0.35	-1.4
2,933,077	-		ABZR87_RS13905	0.35	+0.1
2,933,077	-		ABZR87_RS13905	0.35	-0.5
2,933,077	-		ABZR87_RS13905	0.35	+1.6
2,933,077	-		ABZR87_RS13905	0.35	+1.2
2,933,077	-		ABZR87_RS13905	0.35	-0.2
2,933,077	-		ABZR87_RS13905	0.35	-0.1
2,933,077	-		ABZR87_RS13905	0.35	+0.6