Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS09905

Experiment: root EcoFAB sample 2; outgrowth in LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	root EcoFAB sample 2; outgrowth in LB
2,101,366	+		ABZR87_RS09900	0.12	+1.5
2,101,366	+		ABZR87_RS09900	0.12	-0.3
2,101,366	+		ABZR87_RS09900	0.12	-0.9
2,101,367	-		ABZR87_RS09900	0.12	+1.6
2,101,372	+		ABZR87_RS09900	0.13	-0.2
2,101,545	+		ABZR87_RS09900	0.31	-2.1
2,101,558	+		ABZR87_RS09900	0.33	-1.2
2,101,558	+		ABZR87_RS09900	0.33	-0.0
2,101,558	+		ABZR87_RS09900	0.33	+1.1
2,101,558	+		ABZR87_RS09900	0.33	-0.1
2,101,559	-		ABZR87_RS09900	0.33	-0.1
2,101,559	-		ABZR87_RS09900	0.33	+0.1
2,101,591	+		ABZR87_RS09900	0.36	-0.9
2,101,591	+		ABZR87_RS09900	0.36	+1.0
2,101,591	+		ABZR87_RS09900	0.36	+4.8
2,101,591	+		ABZR87_RS09900	0.36	-0.8
2,101,591	+		ABZR87_RS09900	0.36	-0.1
2,101,592	-		ABZR87_RS09900	0.36	+0.1
2,101,592	-		ABZR87_RS09900	0.36	+0.3
2,101,597	+		ABZR87_RS09900	0.37	+0.2
2,101,771	+		ABZR87_RS09900	0.55	-0.3
2,101,771	+		ABZR87_RS09900	0.55	+0.6
2,101,772	-		ABZR87_RS09900	0.56	-0.4
2,101,780	+		ABZR87_RS09900	0.56	+1.3
2,101,780	+		ABZR87_RS09900	0.56	+0.2
2,101,780	+		ABZR87_RS09900	0.56	+0.0
2,101,780	+		ABZR87_RS09900	0.56	-2.6
2,101,780	+		ABZR87_RS09900	0.56	-1.4
2,101,780	+		ABZR87_RS09900	0.56	-1.1
2,101,781	-		ABZR87_RS09900	0.57	-0.2
2,101,803	+		ABZR87_RS09900	0.59	+1.1
2,101,865	-		ABZR87_RS09900	0.65	+0.4
2,101,865	-		ABZR87_RS09900	0.65	-2.3
2,101,865	-		ABZR87_RS09900	0.65	-0.8
2,102,263	+				-0.7
2,102,263	+				-0.8
2,102,264	-				-1.4
2,102,264	-				-0.6
2,102,264	-				+0.4
2,102,264	-				+0.2
2,102,341	+				-2.1
2,102,341	+				+2.0
2,102,341	+				-2.5
2,102,342	-				+0.2
2,102,342	-				+0.5
2,102,342	-				+1.7
2,102,414	-				-0.3
2,102,512	+		ABZR87_RS09905	0.14	+0.9
2,102,581	+		ABZR87_RS09905	0.18	-2.5
2,102,581	+		ABZR87_RS09905	0.18	+0.3
2,102,582	-		ABZR87_RS09905	0.18	+0.6
2,102,582	-		ABZR87_RS09905	0.18	+0.5
2,102,582	-		ABZR87_RS09905	0.18	-1.7
2,102,689	+		ABZR87_RS09905	0.24	+1.3
2,102,689	+		ABZR87_RS09905	0.24	-0.1
2,102,690	-		ABZR87_RS09905	0.24	-2.3
2,102,690	-		ABZR87_RS09905	0.24	+1.3
2,102,690	-		ABZR87_RS09905	0.24	-2.1
2,102,690	-		ABZR87_RS09905	0.24	+0.9
2,102,690	-		ABZR87_RS09905	0.24	+0.6
2,102,711	-		ABZR87_RS09905	0.25	+1.2
2,102,711	-		ABZR87_RS09905	0.25	-1.1
2,102,711	-		ABZR87_RS09905	0.25	+0.2
2,102,731	+		ABZR87_RS09905	0.26	-0.2
2,102,731	+		ABZR87_RS09905	0.26	-1.0
2,102,813	-		ABZR87_RS09905	0.31	+0.4
2,102,830	+		ABZR87_RS09905	0.31	-0.0
2,102,830	+		ABZR87_RS09905	0.31	+0.4
2,102,831	-		ABZR87_RS09905	0.32	+0.4
2,102,875	+		ABZR87_RS09905	0.34	+0.5
2,102,876	-		ABZR87_RS09905	0.34	-2.9
2,102,876	-		ABZR87_RS09905	0.34	-0.2
2,102,876	-		ABZR87_RS09905	0.34	+1.4
2,102,965	+		ABZR87_RS09905	0.39	+0.2
2,102,965	+		ABZR87_RS09905	0.39	-0.2
2,102,965	+		ABZR87_RS09905	0.39	+0.3
2,102,965	+		ABZR87_RS09905	0.39	-1.4
2,102,966	-		ABZR87_RS09905	0.39	-2.6
2,102,966	-		ABZR87_RS09905	0.39	-0.3
2,102,966	-		ABZR87_RS09905	0.39	+0.7
2,103,097	+		ABZR87_RS09905	0.46	+0.1
2,103,097	+		ABZR87_RS09905	0.46	-0.9
2,103,098	-		ABZR87_RS09905	0.46	+0.2
2,103,098	-		ABZR87_RS09905	0.46	+0.4
2,103,098	-		ABZR87_RS09905	0.46	+1.5
2,103,098	-		ABZR87_RS09905	0.46	-1.0
2,103,098	-		ABZR87_RS09905	0.46	-1.3
2,103,145	+		ABZR87_RS09905	0.49	+1.4
2,103,145	+		ABZR87_RS09905	0.49	-0.0
2,103,145	+		ABZR87_RS09905	0.49	+1.6
2,103,145	+		ABZR87_RS09905	0.49	-1.0
2,103,145	+		ABZR87_RS09905	0.49	+0.7
2,103,145	+		ABZR87_RS09905	0.49	-2.2
2,103,146	-		ABZR87_RS09905	0.49	+0.3
2,103,146	-		ABZR87_RS09905	0.49	-1.8
2,103,146	-		ABZR87_RS09905	0.49	-1.7
2,103,295	+		ABZR87_RS09905	0.57	+1.2
2,103,349	+		ABZR87_RS09905	0.60	-0.6
2,103,350	-		ABZR87_RS09905	0.60	+0.8
2,103,436	+		ABZR87_RS09905	0.65	-2.7
2,103,511	+		ABZR87_RS09905	0.69	-0.7
2,103,512	-		ABZR87_RS09905	0.69	+1.5
2,103,512	-		ABZR87_RS09905	0.69	-0.2
2,103,512	-		ABZR87_RS09905	0.69	-2.5
2,103,512	-		ABZR87_RS09905	0.69	-1.6
2,103,611	+		ABZR87_RS09905	0.75	-0.3
2,103,612	-		ABZR87_RS09905	0.75	+0.9
2,103,613	+		ABZR87_RS09905	0.75	+0.6
2,103,613	+		ABZR87_RS09905	0.75	-2.6
2,103,613	+		ABZR87_RS09905	0.75	-1.6
2,103,613	+		ABZR87_RS09905	0.75	+0.5
2,103,613	+		ABZR87_RS09905	0.75	+0.3
2,103,673	+		ABZR87_RS09905	0.78	-0.0
2,103,673	+		ABZR87_RS09905	0.78	+0.2
2,103,673	+		ABZR87_RS09905	0.78	-0.0
2,103,673	+		ABZR87_RS09905	0.78	-0.4
2,103,674	-		ABZR87_RS09905	0.78	-0.7
2,103,743	-		ABZR87_RS09905	0.82	+0.1
2,103,839	-		ABZR87_RS09905	0.87	+1.2
2,103,856	+		ABZR87_RS09905	0.88	+0.5
2,103,856	+		ABZR87_RS09905	0.88	+1.0
2,103,856	+		ABZR87_RS09905	0.88	+1.3
2,103,856	+		ABZR87_RS09905	0.88	+0.4
2,103,857	-		ABZR87_RS09905	0.88	-0.8
2,103,857	-		ABZR87_RS09905	0.88	-1.8
2,103,857	-		ABZR87_RS09905	0.88	+0.2
2,103,857	-		ABZR87_RS09905	0.88	-0.4
2,103,857	-		ABZR87_RS09905	0.88	-0.2
2,104,008	+				-0.1
2,104,009	-				-0.1
2,104,124	-				+0.3
2,104,270	+				+0.6
2,104,352	+				+0.3
2,104,366	-				-0.5
2,104,462	+				-2.8
2,104,487	+				-0.6
2,104,487	+				-1.1
2,104,525	+				-0.4
2,104,530	-				+0.1
2,104,634	+				+0.2
2,104,635	-				-0.3
2,104,635	-				-0.8
2,104,635	-				+0.3
2,104,729	-				-1.6
2,104,777	+		ABZR87_RS09910	0.18	-1.7
2,104,778	-		ABZR87_RS09910	0.18	-1.8
2,104,778	-		ABZR87_RS09910	0.18	-0.1
2,104,778	-		ABZR87_RS09910	0.18	-1.2
2,104,778	-		ABZR87_RS09910	0.18	-0.3
2,104,787	+		ABZR87_RS09910	0.20	+0.7
2,104,788	-		ABZR87_RS09910	0.20	-0.6
2,104,788	-		ABZR87_RS09910	0.20	-0.1
2,104,788	-		ABZR87_RS09910	0.20	-0.0
2,104,792	+		ABZR87_RS09910	0.20	-1.7
2,104,933	+		ABZR87_RS09910	0.44	+0.1
2,104,933	+		ABZR87_RS09910	0.44	-2.3
2,104,934	-		ABZR87_RS09910	0.45	-1.8