Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS08880

Experiment: root EcoFAB sample 2; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS08875 and ABZR87_RS08880 are separated by 127 nucleotidesABZR87_RS08880 and ABZR87_RS08885 are separated by 6 nucleotides ABZR87_RS08875: ABZR87_RS08875 - bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II, at 1,885,434 to 1,886,573 _RS08875 ABZR87_RS08880: ABZR87_RS08880 - riboflavin synthase, at 1,886,701 to 1,887,354 _RS08880 ABZR87_RS08885: ABZR87_RS08885 - bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD, at 1,887,361 to 1,888,473 _RS08885 Position (kb) 1886 1887 1888Strain fitness (log2 ratio) -1 0 1 2at 1886.314 kb on - strand, within ABZR87_RS08875at 1886.579 kb on - strandat 1886.579 kb on - strandat 1886.579 kb on - strandat 1886.664 kb on + strandat 1886.664 kb on + strandat 1886.664 kb on + strandat 1886.664 kb on + strandat 1886.665 kb on - strandat 1886.665 kb on - strandat 1886.665 kb on - strandat 1887.355 kb on - strandat 1887.355 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction root EcoFAB sample 2; outgrowth in LB
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1,886,314 - ABZR87_RS08875 0.77 -0.2
1,886,579 - +1.9
1,886,579 - -0.8
1,886,579 - -1.1
1,886,664 + +0.4
1,886,664 + +1.0
1,886,664 + -1.3
1,886,664 + -0.1
1,886,665 - +0.4
1,886,665 - +1.2
1,886,665 - -1.2
1,887,355 - -0.4
1,887,355 - +1.1

Or see this region's nucleotide sequence