Experiment: root EcoFAB sample 2; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS03935 and ABZR87_RS03940 are separated by 149 nucleotides ABZR87_RS03940 and ABZR87_RS03945 are separated by 650 nucleotides
ABZR87_RS03935: ABZR87_RS03935 - aminomethyl-transferring glycine dehydrogenase, at 816,428 to 819,367
_RS03935
ABZR87_RS03940: ABZR87_RS03940 - L-serine ammonia-lyase, at 819,517 to 820,893
_RS03940
ABZR87_RS03945: ABZR87_RS03945 - oligopeptide transporter, OPT family, at 821,544 to 823,598
_RS03945
Position (kb) 819
820
821 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 818.517 kb on - strand, within ABZR87_RS03935 at 818.783 kb on + strand, within ABZR87_RS03935 at 818.783 kb on + strand, within ABZR87_RS03935 at 818.783 kb on + strand, within ABZR87_RS03935 at 818.783 kb on + strand, within ABZR87_RS03935 at 818.783 kb on + strand, within ABZR87_RS03935 at 818.783 kb on + strand, within ABZR87_RS03935 at 818.784 kb on - strand, within ABZR87_RS03935 at 818.784 kb on - strand, within ABZR87_RS03935 at 818.784 kb on - strand, within ABZR87_RS03935 at 818.784 kb on - strand, within ABZR87_RS03935 at 818.784 kb on - strand, within ABZR87_RS03935 at 818.784 kb on - strand, within ABZR87_RS03935 at 818.784 kb on - strand, within ABZR87_RS03935 at 818.849 kb on + strand, within ABZR87_RS03935 at 818.849 kb on + strand, within ABZR87_RS03935 at 818.849 kb on + strand, within ABZR87_RS03935 at 818.850 kb on - strand, within ABZR87_RS03935 at 818.850 kb on - strand, within ABZR87_RS03935 at 818.850 kb on - strand, within ABZR87_RS03935 at 818.850 kb on - strand, within ABZR87_RS03935 at 818.850 kb on - strand, within ABZR87_RS03935 at 818.850 kb on - strand, within ABZR87_RS03935 at 818.874 kb on - strand, within ABZR87_RS03935 at 818.876 kb on + strand, within ABZR87_RS03935 at 818.877 kb on - strand, within ABZR87_RS03935 at 818.888 kb on + strand, within ABZR87_RS03935 at 818.888 kb on + strand, within ABZR87_RS03935 at 818.888 kb on + strand, within ABZR87_RS03935 at 818.888 kb on + strand, within ABZR87_RS03935 at 818.889 kb on - strand, within ABZR87_RS03935 at 819.224 kb on + strand at 819.224 kb on + strand at 819.225 kb on - strand at 819.225 kb on - strand at 819.225 kb on - strand at 819.275 kb on + strand at 819.275 kb on + strand at 819.275 kb on + strand at 819.276 kb on - strand at 819.276 kb on - strand at 819.276 kb on - strand at 819.308 kb on + strand at 819.365 kb on + strand at 819.366 kb on - strand at 819.366 kb on - strand at 819.366 kb on - strand at 819.366 kb on - strand at 819.366 kb on - strand at 819.366 kb on - strand at 819.366 kb on - strand at 819.511 kb on + strand at 819.512 kb on - strand at 819.633 kb on - strand at 819.633 kb on - strand at 819.633 kb on - strand at 819.633 kb on - strand at 819.633 kb on - strand at 819.667 kb on + strand, within ABZR87_RS03940 at 819.667 kb on + strand, within ABZR87_RS03940 at 819.667 kb on + strand, within ABZR87_RS03940 at 819.668 kb on - strand, within ABZR87_RS03940 at 819.668 kb on - strand, within ABZR87_RS03940 at 819.668 kb on - strand, within ABZR87_RS03940 at 819.668 kb on - strand, within ABZR87_RS03940 at 819.862 kb on + strand, within ABZR87_RS03940 at 819.863 kb on - strand, within ABZR87_RS03940 at 819.863 kb on - strand, within ABZR87_RS03940 at 819.950 kb on - strand, within ABZR87_RS03940 at 819.950 kb on - strand, within ABZR87_RS03940 at 820.112 kb on - strand, within ABZR87_RS03940 at 820.255 kb on + strand, within ABZR87_RS03940 at 820.255 kb on + strand, within ABZR87_RS03940 at 820.256 kb on - strand, within ABZR87_RS03940 at 820.327 kb on + strand, within ABZR87_RS03940 at 820.327 kb on + strand, within ABZR87_RS03940 at 820.327 kb on + strand, within ABZR87_RS03940 at 820.328 kb on - strand, within ABZR87_RS03940 at 820.328 kb on - strand, within ABZR87_RS03940 at 820.423 kb on + strand, within ABZR87_RS03940 at 820.423 kb on + strand, within ABZR87_RS03940 at 820.423 kb on + strand, within ABZR87_RS03940 at 820.423 kb on + strand, within ABZR87_RS03940 at 820.423 kb on + strand, within ABZR87_RS03940 at 820.423 kb on + strand, within ABZR87_RS03940 at 820.423 kb on + strand, within ABZR87_RS03940 at 820.423 kb on + strand, within ABZR87_RS03940 at 820.424 kb on - strand, within ABZR87_RS03940 at 820.424 kb on - strand, within ABZR87_RS03940 at 820.424 kb on - strand, within ABZR87_RS03940 at 820.424 kb on - strand, within ABZR87_RS03940 at 820.424 kb on - strand, within ABZR87_RS03940 at 820.424 kb on - strand, within ABZR87_RS03940 at 820.426 kb on + strand, within ABZR87_RS03940 at 820.426 kb on + strand, within ABZR87_RS03940 at 820.426 kb on + strand, within ABZR87_RS03940 at 820.426 kb on + strand, within ABZR87_RS03940 at 820.427 kb on - strand, within ABZR87_RS03940 at 820.427 kb on - strand, within ABZR87_RS03940 at 820.427 kb on - strand, within ABZR87_RS03940 at 820.427 kb on - strand, within ABZR87_RS03940 at 820.504 kb on + strand, within ABZR87_RS03940 at 820.504 kb on + strand, within ABZR87_RS03940 at 820.505 kb on - strand, within ABZR87_RS03940 at 820.505 kb on - strand, within ABZR87_RS03940 at 820.704 kb on + strand, within ABZR87_RS03940 at 820.704 kb on + strand, within ABZR87_RS03940 at 820.704 kb on + strand, within ABZR87_RS03940 at 820.704 kb on + strand, within ABZR87_RS03940 at 820.705 kb on - strand, within ABZR87_RS03940 at 820.705 kb on - strand, within ABZR87_RS03940 at 820.705 kb on - strand, within ABZR87_RS03940 at 820.705 kb on - strand, within ABZR87_RS03940 at 820.780 kb on + strand at 820.780 kb on + strand at 820.780 kb on + strand at 820.780 kb on + strand at 820.780 kb on + strand at 820.780 kb on + strand at 820.780 kb on + strand at 820.780 kb on + strand at 820.780 kb on + strand at 820.780 kb on + strand at 820.780 kb on + strand at 820.781 kb on - strand at 820.781 kb on - strand at 820.781 kb on - strand at 820.781 kb on - strand at 820.781 kb on - strand at 820.781 kb on - strand at 820.781 kb on - strand at 820.781 kb on - strand at 820.781 kb on - strand at 820.781 kb on - strand at 820.781 kb on - strand at 820.830 kb on + strand at 820.831 kb on - strand at 820.831 kb on - strand at 820.831 kb on - strand at 820.843 kb on + strand at 820.843 kb on + strand at 820.843 kb on + strand at 820.843 kb on + strand at 820.843 kb on + strand at 820.843 kb on + strand at 820.843 kb on + strand at 820.844 kb on - strand at 820.844 kb on - strand at 820.844 kb on - strand at 820.844 kb on - strand at 820.844 kb on - strand at 820.844 kb on - strand at 820.878 kb on + strand at 820.878 kb on + strand at 820.878 kb on + strand at 820.879 kb on - strand at 821.236 kb on - strand at 821.236 kb on - strand at 821.454 kb on + strand at 821.455 kb on - strand at 821.503 kb on + strand at 821.503 kb on + strand at 821.503 kb on + strand at 821.503 kb on + strand at 821.503 kb on + strand at 821.504 kb on - strand at 821.504 kb on - strand at 821.505 kb on + strand at 821.505 kb on + strand at 821.506 kb on - strand at 821.602 kb on + strand at 821.643 kb on - strand at 821.658 kb on + strand at 821.658 kb on + strand at 821.659 kb on - strand at 821.659 kb on - strand at 821.659 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction root EcoFAB sample 2; outgrowth in LB remove 818,517 - ABZR87_RS03935 0.71 +0.8 818,783 + ABZR87_RS03935 0.80 -1.6 818,783 + ABZR87_RS03935 0.80 -0.2 818,783 + ABZR87_RS03935 0.80 -0.5 818,783 + ABZR87_RS03935 0.80 +0.5 818,783 + ABZR87_RS03935 0.80 -2.0 818,783 + ABZR87_RS03935 0.80 +0.4 818,784 - ABZR87_RS03935 0.80 +0.0 818,784 - ABZR87_RS03935 0.80 -2.7 818,784 - ABZR87_RS03935 0.80 +0.2 818,784 - ABZR87_RS03935 0.80 -0.7 818,784 - ABZR87_RS03935 0.80 -1.9 818,784 - ABZR87_RS03935 0.80 +0.1 818,784 - ABZR87_RS03935 0.80 -1.0 818,849 + ABZR87_RS03935 0.82 -0.5 818,849 + ABZR87_RS03935 0.82 -1.1 818,849 + ABZR87_RS03935 0.82 +0.5 818,850 - ABZR87_RS03935 0.82 -0.4 818,850 - ABZR87_RS03935 0.82 +1.2 818,850 - ABZR87_RS03935 0.82 -0.1 818,850 - ABZR87_RS03935 0.82 -1.9 818,850 - ABZR87_RS03935 0.82 -2.6 818,850 - ABZR87_RS03935 0.82 +0.5 818,874 - ABZR87_RS03935 0.83 +0.0 818,876 + ABZR87_RS03935 0.83 +1.2 818,877 - ABZR87_RS03935 0.83 -1.9 818,888 + ABZR87_RS03935 0.84 -2.7 818,888 + ABZR87_RS03935 0.84 +0.4 818,888 + ABZR87_RS03935 0.84 -0.4 818,888 + ABZR87_RS03935 0.84 -0.3 818,889 - ABZR87_RS03935 0.84 +1.6 819,224 + -0.2 819,224 + -0.6 819,225 - -1.5 819,225 - -0.2 819,225 - -0.8 819,275 + +1.8 819,275 + -0.6 819,275 + -0.4 819,276 - -0.5 819,276 - -0.3 819,276 - -1.3 819,308 + -0.4 819,365 + +2.2 819,366 - -1.0 819,366 - -0.4 819,366 - +2.3 819,366 - -1.5 819,366 - -1.7 819,366 - +0.0 819,366 - -0.9 819,511 + -0.7 819,512 - +1.4 819,633 - +0.3 819,633 - +1.8 819,633 - -1.1 819,633 - -0.1 819,633 - +0.5 819,667 + ABZR87_RS03940 0.11 -0.9 819,667 + ABZR87_RS03940 0.11 +0.1 819,667 + ABZR87_RS03940 0.11 +1.1 819,668 - ABZR87_RS03940 0.11 +0.0 819,668 - ABZR87_RS03940 0.11 -1.3 819,668 - ABZR87_RS03940 0.11 -0.2 819,668 - ABZR87_RS03940 0.11 -1.8 819,862 + ABZR87_RS03940 0.25 +0.8 819,863 - ABZR87_RS03940 0.25 -2.3 819,863 - ABZR87_RS03940 0.25 -1.2 819,950 - ABZR87_RS03940 0.31 -1.4 819,950 - ABZR87_RS03940 0.31 +0.4 820,112 - ABZR87_RS03940 0.43 -0.7 820,255 + ABZR87_RS03940 0.54 -1.0 820,255 + ABZR87_RS03940 0.54 -3.2 820,256 - ABZR87_RS03940 0.54 +0.6 820,327 + ABZR87_RS03940 0.59 -3.2 820,327 + ABZR87_RS03940 0.59 +2.3 820,327 + ABZR87_RS03940 0.59 +1.3 820,328 - ABZR87_RS03940 0.59 -0.4 820,328 - ABZR87_RS03940 0.59 +1.3 820,423 + ABZR87_RS03940 0.66 +0.1 820,423 + ABZR87_RS03940 0.66 -0.5 820,423 + ABZR87_RS03940 0.66 -1.7 820,423 + ABZR87_RS03940 0.66 -1.1 820,423 + ABZR87_RS03940 0.66 -0.6 820,423 + ABZR87_RS03940 0.66 +0.1 820,423 + ABZR87_RS03940 0.66 -0.1 820,423 + ABZR87_RS03940 0.66 +0.9 820,424 - ABZR87_RS03940 0.66 +0.9 820,424 - ABZR87_RS03940 0.66 -0.6 820,424 - ABZR87_RS03940 0.66 +0.8 820,424 - ABZR87_RS03940 0.66 +0.8 820,424 - ABZR87_RS03940 0.66 +0.9 820,424 - ABZR87_RS03940 0.66 +0.6 820,426 + ABZR87_RS03940 0.66 -0.5 820,426 + ABZR87_RS03940 0.66 -0.4 820,426 + ABZR87_RS03940 0.66 +1.0 820,426 + ABZR87_RS03940 0.66 -1.9 820,427 - ABZR87_RS03940 0.66 +1.3 820,427 - ABZR87_RS03940 0.66 +0.1 820,427 - ABZR87_RS03940 0.66 -1.6 820,427 - ABZR87_RS03940 0.66 -0.3 820,504 + ABZR87_RS03940 0.72 -2.4 820,504 + ABZR87_RS03940 0.72 -1.0 820,505 - ABZR87_RS03940 0.72 +0.2 820,505 - ABZR87_RS03940 0.72 +1.0 820,704 + ABZR87_RS03940 0.86 -1.2 820,704 + ABZR87_RS03940 0.86 +1.2 820,704 + ABZR87_RS03940 0.86 -1.1 820,704 + ABZR87_RS03940 0.86 +0.8 820,705 - ABZR87_RS03940 0.86 -0.9 820,705 - ABZR87_RS03940 0.86 +0.0 820,705 - ABZR87_RS03940 0.86 -0.6 820,705 - ABZR87_RS03940 0.86 +1.0 820,780 + -2.4 820,780 + -2.4 820,780 + +3.9 820,780 + +0.2 820,780 + -0.4 820,780 + -0.8 820,780 + -1.3 820,780 + -1.0 820,780 + +1.9 820,780 + +0.2 820,780 + -1.2 820,781 - -1.2 820,781 - +1.1 820,781 - -1.5 820,781 - -3.5 820,781 - +0.8 820,781 - +0.9 820,781 - +0.8 820,781 - -1.0 820,781 - -0.2 820,781 - +4.4 820,781 - -2.2 820,830 + +0.2 820,831 - -1.4 820,831 - -1.4 820,831 - +1.1 820,843 + -1.6 820,843 + -0.5 820,843 + +2.1 820,843 + +0.7 820,843 + -0.3 820,843 + -0.0 820,843 + -0.2 820,844 - +1.8 820,844 - -0.8 820,844 - -0.2 820,844 - +0.2 820,844 - -0.3 820,844 - +0.2 820,878 + +0.5 820,878 + +0.3 820,878 + -1.8 820,879 - -0.1 821,236 - +1.3 821,236 - -0.8 821,454 + +0.2 821,455 - -0.6 821,503 + -0.2 821,503 + -0.7 821,503 + -0.9 821,503 + +0.9 821,503 + +0.6 821,504 - -1.6 821,504 - +0.8 821,505 + -1.2 821,505 + +4.2 821,506 - +0.2 821,602 + -1.7 821,643 - -1.9 821,658 + +0.3 821,658 + +0.6 821,659 - -0.4 821,659 - -0.8 821,659 - -1.2
Or see this region's nucleotide sequence