Experiment: root EcoFAB sample 2; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS03855 and ABZR87_RS03860 are separated by 343 nucleotides ABZR87_RS03860 and ABZR87_RS03865 are separated by 37 nucleotides ABZR87_RS03865 and ABZR87_RS03870 are separated by 7 nucleotides
ABZR87_RS03855: ABZR87_RS03855 - allantoicase, at 795,596 to 796,606
_RS03855
ABZR87_RS03860: ABZR87_RS03860 - C4-dicarboxylate transporter DctA, at 796,950 to 798,290
_RS03860
ABZR87_RS03865: ABZR87_RS03865 - GntR family transcriptional regulator, at 798,328 to 799,023
_RS03865
ABZR87_RS03870: ABZR87_RS03870 - YigZ family protein, at 799,031 to 799,615
_RS03870
Position (kb) 796
797
798
799 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 796.023 kb on + strand, within ABZR87_RS03855 at 796.023 kb on + strand, within ABZR87_RS03855 at 796.023 kb on + strand, within ABZR87_RS03855 at 796.023 kb on + strand, within ABZR87_RS03855 at 796.023 kb on + strand, within ABZR87_RS03855 at 796.024 kb on - strand, within ABZR87_RS03855 at 796.024 kb on - strand, within ABZR87_RS03855 at 796.024 kb on - strand, within ABZR87_RS03855 at 796.024 kb on - strand, within ABZR87_RS03855 at 796.024 kb on - strand, within ABZR87_RS03855 at 796.024 kb on - strand, within ABZR87_RS03855 at 796.024 kb on - strand, within ABZR87_RS03855 at 796.024 kb on - strand, within ABZR87_RS03855 at 796.101 kb on + strand, within ABZR87_RS03855 at 796.101 kb on + strand, within ABZR87_RS03855 at 796.102 kb on - strand, within ABZR87_RS03855 at 796.185 kb on + strand, within ABZR87_RS03855 at 796.185 kb on + strand, within ABZR87_RS03855 at 796.185 kb on + strand, within ABZR87_RS03855 at 796.185 kb on + strand, within ABZR87_RS03855 at 796.186 kb on - strand, within ABZR87_RS03855 at 796.186 kb on - strand, within ABZR87_RS03855 at 796.186 kb on - strand, within ABZR87_RS03855 at 796.186 kb on - strand, within ABZR87_RS03855 at 796.186 kb on - strand, within ABZR87_RS03855 at 796.269 kb on + strand, within ABZR87_RS03855 at 796.269 kb on + strand, within ABZR87_RS03855 at 796.270 kb on - strand, within ABZR87_RS03855 at 796.270 kb on - strand, within ABZR87_RS03855 at 796.380 kb on + strand, within ABZR87_RS03855 at 796.381 kb on - strand, within ABZR87_RS03855 at 796.381 kb on - strand, within ABZR87_RS03855 at 796.440 kb on + strand, within ABZR87_RS03855 at 796.440 kb on + strand, within ABZR87_RS03855 at 796.440 kb on + strand, within ABZR87_RS03855 at 796.440 kb on + strand, within ABZR87_RS03855 at 796.441 kb on - strand, within ABZR87_RS03855 at 796.441 kb on - strand, within ABZR87_RS03855 at 796.594 kb on + strand at 796.594 kb on + strand at 796.594 kb on + strand at 796.595 kb on - strand at 796.638 kb on + strand at 796.638 kb on + strand at 796.638 kb on + strand at 796.638 kb on + strand at 796.638 kb on + strand at 796.639 kb on - strand at 796.639 kb on - strand at 796.639 kb on - strand at 796.639 kb on - strand at 796.639 kb on - strand at 796.639 kb on - strand at 796.640 kb on + strand at 796.640 kb on + strand at 796.640 kb on + strand at 796.640 kb on + strand at 796.640 kb on + strand at 796.640 kb on + strand at 796.640 kb on + strand at 796.641 kb on - strand at 796.641 kb on - strand at 796.641 kb on - strand at 796.641 kb on - strand at 796.641 kb on - strand at 796.641 kb on - strand at 796.641 kb on - strand at 796.641 kb on - strand at 796.641 kb on - strand at 796.641 kb on - strand at 796.641 kb on - strand at 796.641 kb on - strand at 796.717 kb on + strand at 796.717 kb on + strand at 796.717 kb on + strand at 796.717 kb on + strand at 796.717 kb on + strand at 796.763 kb on + strand at 796.805 kb on + strand at 796.806 kb on - strand at 796.806 kb on - strand at 796.929 kb on + strand at 796.929 kb on + strand at 796.930 kb on - strand at 796.930 kb on - strand at 796.961 kb on + strand at 796.962 kb on - strand at 797.184 kb on + strand, within ABZR87_RS03860 at 797.185 kb on - strand, within ABZR87_RS03860 at 797.185 kb on - strand, within ABZR87_RS03860 at 797.185 kb on - strand, within ABZR87_RS03860 at 797.235 kb on + strand, within ABZR87_RS03860 at 797.235 kb on + strand, within ABZR87_RS03860 at 797.235 kb on + strand, within ABZR87_RS03860 at 797.235 kb on + strand, within ABZR87_RS03860 at 797.235 kb on + strand, within ABZR87_RS03860 at 797.235 kb on + strand, within ABZR87_RS03860 at 797.236 kb on - strand, within ABZR87_RS03860 at 797.236 kb on - strand, within ABZR87_RS03860 at 797.236 kb on - strand, within ABZR87_RS03860 at 797.236 kb on - strand, within ABZR87_RS03860 at 797.236 kb on - strand, within ABZR87_RS03860 at 797.304 kb on + strand, within ABZR87_RS03860 at 797.304 kb on + strand, within ABZR87_RS03860 at 797.304 kb on + strand, within ABZR87_RS03860 at 797.304 kb on + strand, within ABZR87_RS03860 at 797.304 kb on + strand, within ABZR87_RS03860 at 797.305 kb on - strand, within ABZR87_RS03860 at 797.305 kb on - strand, within ABZR87_RS03860 at 797.305 kb on - strand, within ABZR87_RS03860 at 797.305 kb on - strand, within ABZR87_RS03860 at 797.305 kb on - strand, within ABZR87_RS03860 at 797.372 kb on + strand, within ABZR87_RS03860 at 797.373 kb on - strand, within ABZR87_RS03860 at 797.373 kb on - strand, within ABZR87_RS03860 at 797.373 kb on - strand, within ABZR87_RS03860 at 797.586 kb on + strand, within ABZR87_RS03860 at 797.587 kb on - strand, within ABZR87_RS03860 at 797.634 kb on + strand, within ABZR87_RS03860 at 797.634 kb on + strand, within ABZR87_RS03860 at 797.634 kb on + strand, within ABZR87_RS03860 at 797.635 kb on - strand, within ABZR87_RS03860 at 797.635 kb on - strand, within ABZR87_RS03860 at 797.635 kb on - strand, within ABZR87_RS03860 at 797.635 kb on - strand, within ABZR87_RS03860 at 797.635 kb on - strand, within ABZR87_RS03860 at 797.635 kb on - strand, within ABZR87_RS03860 at 797.635 kb on - strand, within ABZR87_RS03860 at 797.635 kb on - strand, within ABZR87_RS03860 at 797.877 kb on + strand, within ABZR87_RS03860 at 797.878 kb on - strand, within ABZR87_RS03860 at 798.272 kb on + strand at 798.272 kb on + strand at 798.272 kb on + strand at 798.272 kb on + strand at 798.272 kb on + strand at 798.273 kb on - strand at 798.273 kb on - strand at 798.273 kb on - strand at 798.451 kb on + strand, within ABZR87_RS03865 at 798.451 kb on + strand, within ABZR87_RS03865 at 798.451 kb on + strand, within ABZR87_RS03865 at 798.451 kb on + strand, within ABZR87_RS03865 at 798.452 kb on - strand, within ABZR87_RS03865 at 798.452 kb on - strand, within ABZR87_RS03865 at 798.452 kb on - strand, within ABZR87_RS03865 at 798.646 kb on + strand, within ABZR87_RS03865 at 798.796 kb on + strand, within ABZR87_RS03865 at 798.796 kb on + strand, within ABZR87_RS03865 at 798.796 kb on + strand, within ABZR87_RS03865 at 798.796 kb on + strand, within ABZR87_RS03865 at 798.796 kb on + strand, within ABZR87_RS03865 at 798.797 kb on - strand, within ABZR87_RS03865 at 798.797 kb on - strand, within ABZR87_RS03865 at 798.797 kb on - strand, within ABZR87_RS03865 at 798.797 kb on - strand, within ABZR87_RS03865 at 798.797 kb on - strand, within ABZR87_RS03865 at 798.835 kb on + strand, within ABZR87_RS03865 at 798.835 kb on + strand, within ABZR87_RS03865 at 798.835 kb on + strand, within ABZR87_RS03865 at 798.835 kb on + strand, within ABZR87_RS03865 at 798.835 kb on + strand, within ABZR87_RS03865 at 798.835 kb on + strand, within ABZR87_RS03865 at 798.836 kb on - strand, within ABZR87_RS03865 at 798.836 kb on - strand, within ABZR87_RS03865 at 798.836 kb on - strand, within ABZR87_RS03865 at 798.836 kb on - strand, within ABZR87_RS03865 at 798.836 kb on - strand, within ABZR87_RS03865 at 798.836 kb on - strand, within ABZR87_RS03865 at 798.836 kb on - strand, within ABZR87_RS03865 at 798.847 kb on + strand, within ABZR87_RS03865 at 798.847 kb on + strand, within ABZR87_RS03865 at 798.847 kb on + strand, within ABZR87_RS03865 at 798.847 kb on + strand, within ABZR87_RS03865 at 798.848 kb on - strand, within ABZR87_RS03865 at 798.848 kb on - strand, within ABZR87_RS03865 at 799.004 kb on + strand at 799.004 kb on + strand at 799.005 kb on - strand at 799.005 kb on - strand at 799.040 kb on + strand at 799.040 kb on + strand at 799.040 kb on + strand at 799.040 kb on + strand at 799.040 kb on + strand at 799.040 kb on + strand at 799.040 kb on + strand at 799.040 kb on + strand at 799.040 kb on + strand at 799.040 kb on + strand at 799.040 kb on + strand at 799.040 kb on + strand at 799.040 kb on + strand at 799.041 kb on - strand at 799.041 kb on - strand at 799.041 kb on - strand at 799.041 kb on - strand at 799.041 kb on - strand at 799.042 kb on + strand at 799.043 kb on - strand at 799.043 kb on - strand at 799.043 kb on - strand at 799.094 kb on - strand, within ABZR87_RS03870
Per-strain Table
Position Strand Gene LocusTag Fraction root EcoFAB sample 2; outgrowth in LB remove 796,023 + ABZR87_RS03855 0.42 -1.5 796,023 + ABZR87_RS03855 0.42 +0.0 796,023 + ABZR87_RS03855 0.42 +0.2 796,023 + ABZR87_RS03855 0.42 -2.4 796,023 + ABZR87_RS03855 0.42 -2.3 796,024 - ABZR87_RS03855 0.42 +0.1 796,024 - ABZR87_RS03855 0.42 +0.8 796,024 - ABZR87_RS03855 0.42 +0.7 796,024 - ABZR87_RS03855 0.42 -2.0 796,024 - ABZR87_RS03855 0.42 -2.5 796,024 - ABZR87_RS03855 0.42 +0.8 796,024 - ABZR87_RS03855 0.42 -0.8 796,024 - ABZR87_RS03855 0.42 +0.0 796,101 + ABZR87_RS03855 0.50 -3.0 796,101 + ABZR87_RS03855 0.50 -1.2 796,102 - ABZR87_RS03855 0.50 -0.0 796,185 + ABZR87_RS03855 0.58 -0.3 796,185 + ABZR87_RS03855 0.58 -0.9 796,185 + ABZR87_RS03855 0.58 -0.5 796,185 + ABZR87_RS03855 0.58 -0.8 796,186 - ABZR87_RS03855 0.58 -1.1 796,186 - ABZR87_RS03855 0.58 -0.7 796,186 - ABZR87_RS03855 0.58 -1.6 796,186 - ABZR87_RS03855 0.58 -2.6 796,186 - ABZR87_RS03855 0.58 -1.8 796,269 + ABZR87_RS03855 0.67 -1.3 796,269 + ABZR87_RS03855 0.67 -0.3 796,270 - ABZR87_RS03855 0.67 -2.0 796,270 - ABZR87_RS03855 0.67 -0.3 796,380 + ABZR87_RS03855 0.78 -2.8 796,381 - ABZR87_RS03855 0.78 -1.2 796,381 - ABZR87_RS03855 0.78 -1.5 796,440 + ABZR87_RS03855 0.83 -2.3 796,440 + ABZR87_RS03855 0.83 -2.7 796,440 + ABZR87_RS03855 0.83 -2.9 796,440 + ABZR87_RS03855 0.83 -2.1 796,441 - ABZR87_RS03855 0.84 -1.1 796,441 - ABZR87_RS03855 0.84 +0.9 796,594 + -2.7 796,594 + -1.0 796,594 + -0.9 796,595 - -0.3 796,638 + +0.7 796,638 + -0.6 796,638 + -0.4 796,638 + -0.5 796,638 + +1.1 796,639 - -0.4 796,639 - -0.1 796,639 - -0.4 796,639 - -0.7 796,639 - +1.0 796,639 - +0.3 796,640 + -0.4 796,640 + -0.2 796,640 + -1.4 796,640 + +1.2 796,640 + +1.9 796,640 + -0.8 796,640 + -1.5 796,641 - -1.3 796,641 - -0.2 796,641 - +0.2 796,641 - -1.2 796,641 - +0.3 796,641 - -0.3 796,641 - -0.9 796,641 - -0.5 796,641 - +0.9 796,641 - +1.9 796,641 - -0.6 796,641 - +1.8 796,717 + -0.2 796,717 + -0.3 796,717 + -0.2 796,717 + +0.2 796,717 + -2.0 796,763 + -0.9 796,805 + -2.0 796,806 - +1.1 796,806 - -1.0 796,929 + -0.7 796,929 + -1.1 796,930 - +0.1 796,930 - -1.5 796,961 + -1.6 796,962 - -0.3 797,184 + ABZR87_RS03860 0.17 -0.3 797,185 - ABZR87_RS03860 0.18 -0.5 797,185 - ABZR87_RS03860 0.18 +0.3 797,185 - ABZR87_RS03860 0.18 +0.1 797,235 + ABZR87_RS03860 0.21 +0.2 797,235 + ABZR87_RS03860 0.21 -0.1 797,235 + ABZR87_RS03860 0.21 -0.7 797,235 + ABZR87_RS03860 0.21 +0.2 797,235 + ABZR87_RS03860 0.21 +0.9 797,235 + ABZR87_RS03860 0.21 +0.4 797,236 - ABZR87_RS03860 0.21 -1.1 797,236 - ABZR87_RS03860 0.21 +0.4 797,236 - ABZR87_RS03860 0.21 +0.4 797,236 - ABZR87_RS03860 0.21 -0.7 797,236 - ABZR87_RS03860 0.21 -2.4 797,304 + ABZR87_RS03860 0.26 +0.7 797,304 + ABZR87_RS03860 0.26 +2.1 797,304 + ABZR87_RS03860 0.26 +0.3 797,304 + ABZR87_RS03860 0.26 -1.9 797,304 + ABZR87_RS03860 0.26 -1.8 797,305 - ABZR87_RS03860 0.26 +1.2 797,305 - ABZR87_RS03860 0.26 -1.3 797,305 - ABZR87_RS03860 0.26 +0.2 797,305 - ABZR87_RS03860 0.26 +0.0 797,305 - ABZR87_RS03860 0.26 -0.3 797,372 + ABZR87_RS03860 0.31 -0.4 797,373 - ABZR87_RS03860 0.32 -0.0 797,373 - ABZR87_RS03860 0.32 -0.1 797,373 - ABZR87_RS03860 0.32 -0.5 797,586 + ABZR87_RS03860 0.47 -0.4 797,587 - ABZR87_RS03860 0.48 -0.0 797,634 + ABZR87_RS03860 0.51 +0.4 797,634 + ABZR87_RS03860 0.51 +1.3 797,634 + ABZR87_RS03860 0.51 -0.3 797,635 - ABZR87_RS03860 0.51 +1.1 797,635 - ABZR87_RS03860 0.51 +0.3 797,635 - ABZR87_RS03860 0.51 -0.3 797,635 - ABZR87_RS03860 0.51 -0.2 797,635 - ABZR87_RS03860 0.51 -0.9 797,635 - ABZR87_RS03860 0.51 -2.5 797,635 - ABZR87_RS03860 0.51 +0.3 797,635 - ABZR87_RS03860 0.51 -0.0 797,877 + ABZR87_RS03860 0.69 -0.2 797,878 - ABZR87_RS03860 0.69 +0.8 798,272 + +0.0 798,272 + -0.1 798,272 + -1.9 798,272 + -2.2 798,272 + -0.2 798,273 - +0.2 798,273 - -1.5 798,273 - -2.2 798,451 + ABZR87_RS03865 0.18 -1.9 798,451 + ABZR87_RS03865 0.18 -2.5 798,451 + ABZR87_RS03865 0.18 -1.1 798,451 + ABZR87_RS03865 0.18 -3.2 798,452 - ABZR87_RS03865 0.18 -1.8 798,452 - ABZR87_RS03865 0.18 -3.3 798,452 - ABZR87_RS03865 0.18 -2.9 798,646 + ABZR87_RS03865 0.46 +0.2 798,796 + ABZR87_RS03865 0.67 -2.9 798,796 + ABZR87_RS03865 0.67 -0.3 798,796 + ABZR87_RS03865 0.67 -0.0 798,796 + ABZR87_RS03865 0.67 -1.7 798,796 + ABZR87_RS03865 0.67 -2.3 798,797 - ABZR87_RS03865 0.67 -2.8 798,797 - ABZR87_RS03865 0.67 -2.9 798,797 - ABZR87_RS03865 0.67 -3.7 798,797 - ABZR87_RS03865 0.67 -0.7 798,797 - ABZR87_RS03865 0.67 -3.8 798,835 + ABZR87_RS03865 0.73 -2.3 798,835 + ABZR87_RS03865 0.73 -1.9 798,835 + ABZR87_RS03865 0.73 -4.3 798,835 + ABZR87_RS03865 0.73 -1.2 798,835 + ABZR87_RS03865 0.73 -2.7 798,835 + ABZR87_RS03865 0.73 -1.2 798,836 - ABZR87_RS03865 0.73 -0.7 798,836 - ABZR87_RS03865 0.73 -3.4 798,836 - ABZR87_RS03865 0.73 -2.1 798,836 - ABZR87_RS03865 0.73 -0.6 798,836 - ABZR87_RS03865 0.73 -3.5 798,836 - ABZR87_RS03865 0.73 -1.2 798,836 - ABZR87_RS03865 0.73 -2.5 798,847 + ABZR87_RS03865 0.75 -1.5 798,847 + ABZR87_RS03865 0.75 -3.4 798,847 + ABZR87_RS03865 0.75 -1.0 798,847 + ABZR87_RS03865 0.75 -3.4 798,848 - ABZR87_RS03865 0.75 -3.4 798,848 - ABZR87_RS03865 0.75 -2.8 799,004 + -1.2 799,004 + -0.7 799,005 - -2.3 799,005 - +0.8 799,040 + -1.8 799,040 + +4.2 799,040 + -0.4 799,040 + +0.4 799,040 + +0.0 799,040 + -1.0 799,040 + +1.7 799,040 + +0.2 799,040 + +0.4 799,040 + +0.7 799,040 + +0.0 799,040 + -1.2 799,040 + +0.4 799,041 - -0.0 799,041 - +0.9 799,041 - +3.8 799,041 - +0.7 799,041 - -2.0 799,042 + -0.2 799,043 - +0.5 799,043 - +0.1 799,043 - -1.6 799,094 - ABZR87_RS03870 0.11 +0.0
Or see this region's nucleotide sequence