Experiment: root EcoFAB sample 2; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS03410 and ABZR87_RS03415 are separated by 32 nucleotides ABZR87_RS03415 and ABZR87_RS03420 overlap by 4 nucleotides ABZR87_RS03420 and ABZR87_RS03425 overlap by 20 nucleotides ABZR87_RS03425 and ABZR87_RS03430 are separated by 1 nucleotides
ABZR87_RS03410: ABZR87_RS03410 - type II secretion system major pseudopilin GspG, at 712,742 to 713,212
_RS03410
ABZR87_RS03415: ABZR87_RS03415 - GspH/FimT family pseudopilin, at 713,245 to 713,757
_RS03415
ABZR87_RS03420: ABZR87_RS03420 - type II secretion system minor pseudopilin GspI, at 713,754 to 714,164
_RS03420
ABZR87_RS03425: ABZR87_RS03425 - prepilin-type N-terminal cleavage/methylation domain-containing protein, at 714,145 to 714,888
_RS03425
ABZR87_RS03430: ABZR87_RS03430 - type II secretion system minor pseudopilin GspK, at 714,890 to 715,969
_RS03430
Position (kb) 714
715 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 713.210 kb on + strand at 713.210 kb on + strand at 713.210 kb on + strand at 713.210 kb on + strand at 713.211 kb on - strand at 713.211 kb on - strand at 713.211 kb on - strand at 713.211 kb on - strand at 713.211 kb on - strand at 713.211 kb on - strand at 713.211 kb on - strand at 713.304 kb on + strand, within ABZR87_RS03415 at 713.304 kb on + strand, within ABZR87_RS03415 at 713.305 kb on - strand, within ABZR87_RS03415 at 713.305 kb on - strand, within ABZR87_RS03415 at 713.506 kb on + strand, within ABZR87_RS03415 at 713.506 kb on + strand, within ABZR87_RS03415 at 713.507 kb on - strand, within ABZR87_RS03415 at 713.507 kb on - strand, within ABZR87_RS03415 at 713.588 kb on + strand, within ABZR87_RS03415 at 713.588 kb on + strand, within ABZR87_RS03415 at 713.588 kb on + strand, within ABZR87_RS03415 at 713.588 kb on + strand, within ABZR87_RS03415 at 713.588 kb on + strand, within ABZR87_RS03415 at 713.588 kb on + strand, within ABZR87_RS03415 at 713.588 kb on + strand, within ABZR87_RS03415 at 713.588 kb on + strand, within ABZR87_RS03415 at 713.588 kb on + strand, within ABZR87_RS03415 at 713.588 kb on + strand, within ABZR87_RS03415 at 713.588 kb on + strand, within ABZR87_RS03415 at 713.588 kb on + strand, within ABZR87_RS03415 at 713.588 kb on + strand, within ABZR87_RS03415 at 713.588 kb on + strand, within ABZR87_RS03415 at 713.588 kb on + strand, within ABZR87_RS03415 at 713.589 kb on - strand, within ABZR87_RS03415 at 713.589 kb on - strand, within ABZR87_RS03415 at 713.589 kb on - strand, within ABZR87_RS03415 at 713.589 kb on - strand, within ABZR87_RS03415 at 713.589 kb on - strand, within ABZR87_RS03415 at 713.589 kb on - strand, within ABZR87_RS03415 at 713.589 kb on - strand, within ABZR87_RS03415 at 713.589 kb on - strand, within ABZR87_RS03415 at 713.589 kb on - strand, within ABZR87_RS03415 at 713.589 kb on - strand, within ABZR87_RS03415 at 713.735 kb on + strand at 713.735 kb on + strand at 713.736 kb on - strand at 714.014 kb on + strand, within ABZR87_RS03420 at 714.162 kb on + strand at 714.162 kb on + strand at 714.162 kb on + strand at 714.162 kb on + strand at 714.162 kb on + strand at 714.162 kb on + strand at 714.163 kb on - strand at 714.163 kb on - strand at 714.163 kb on - strand at 714.334 kb on + strand, within ABZR87_RS03425 at 714.334 kb on + strand, within ABZR87_RS03425 at 714.334 kb on + strand, within ABZR87_RS03425 at 714.335 kb on - strand, within ABZR87_RS03425 at 714.335 kb on - strand, within ABZR87_RS03425 at 714.479 kb on - strand, within ABZR87_RS03425 at 714.479 kb on - strand, within ABZR87_RS03425 at 714.592 kb on + strand, within ABZR87_RS03425 at 714.592 kb on + strand, within ABZR87_RS03425 at 714.593 kb on - strand, within ABZR87_RS03425 at 714.658 kb on + strand, within ABZR87_RS03425 at 714.738 kb on + strand, within ABZR87_RS03425 at 714.738 kb on + strand, within ABZR87_RS03425 at 714.738 kb on + strand, within ABZR87_RS03425 at 714.738 kb on + strand, within ABZR87_RS03425 at 714.739 kb on - strand, within ABZR87_RS03425 at 714.739 kb on - strand, within ABZR87_RS03425 at 715.026 kb on + strand, within ABZR87_RS03430 at 715.026 kb on + strand, within ABZR87_RS03430 at 715.027 kb on - strand, within ABZR87_RS03430 at 715.244 kb on + strand, within ABZR87_RS03430 at 715.244 kb on + strand, within ABZR87_RS03430 at 715.244 kb on + strand, within ABZR87_RS03430 at 715.245 kb on - strand, within ABZR87_RS03430 at 715.245 kb on - strand, within ABZR87_RS03430 at 715.245 kb on - strand, within ABZR87_RS03430 at 715.245 kb on - strand, within ABZR87_RS03430 at 715.245 kb on - strand, within ABZR87_RS03430 at 715.245 kb on - strand, within ABZR87_RS03430 at 715.245 kb on - strand, within ABZR87_RS03430 at 715.245 kb on - strand, within ABZR87_RS03430 at 715.364 kb on + strand, within ABZR87_RS03430 at 715.365 kb on - strand, within ABZR87_RS03430 at 715.365 kb on - strand, within ABZR87_RS03430 at 715.424 kb on + strand, within ABZR87_RS03430 at 715.424 kb on + strand, within ABZR87_RS03430 at 715.424 kb on + strand, within ABZR87_RS03430 at 715.424 kb on + strand, within ABZR87_RS03430 at 715.425 kb on - strand, within ABZR87_RS03430 at 715.425 kb on - strand, within ABZR87_RS03430 at 715.425 kb on - strand, within ABZR87_RS03430 at 715.425 kb on - strand, within ABZR87_RS03430 at 715.425 kb on - strand, within ABZR87_RS03430 at 715.425 kb on - strand, within ABZR87_RS03430 at 715.574 kb on + strand, within ABZR87_RS03430 at 715.607 kb on + strand, within ABZR87_RS03430 at 715.607 kb on + strand, within ABZR87_RS03430 at 715.608 kb on - strand, within ABZR87_RS03430 at 715.608 kb on - strand, within ABZR87_RS03430 at 715.665 kb on + strand, within ABZR87_RS03430 at 715.665 kb on + strand, within ABZR87_RS03430 at 715.666 kb on - strand, within ABZR87_RS03430 at 715.736 kb on + strand, within ABZR87_RS03430 at 715.736 kb on + strand, within ABZR87_RS03430 at 715.737 kb on - strand, within ABZR87_RS03430 at 715.737 kb on - strand, within ABZR87_RS03430 at 715.737 kb on - strand, within ABZR87_RS03430 at 715.737 kb on - strand, within ABZR87_RS03430 at 715.747 kb on + strand, within ABZR87_RS03430 at 715.747 kb on + strand, within ABZR87_RS03430 at 715.835 kb on + strand, within ABZR87_RS03430 at 715.835 kb on + strand, within ABZR87_RS03430 at 715.847 kb on + strand, within ABZR87_RS03430 at 715.848 kb on - strand, within ABZR87_RS03430 at 715.848 kb on - strand, within ABZR87_RS03430
Per-strain Table
Position Strand Gene LocusTag Fraction root EcoFAB sample 2; outgrowth in LB remove 713,210 + -0.5 713,210 + +1.7 713,210 + -2.0 713,210 + -0.6 713,211 - -3.7 713,211 - -0.3 713,211 - -2.1 713,211 - -1.2 713,211 - -0.8 713,211 - -0.3 713,211 - +4.1 713,304 + ABZR87_RS03415 0.12 -0.5 713,304 + ABZR87_RS03415 0.12 -1.1 713,305 - ABZR87_RS03415 0.12 -0.8 713,305 - ABZR87_RS03415 0.12 -0.6 713,506 + ABZR87_RS03415 0.51 -0.9 713,506 + ABZR87_RS03415 0.51 -2.3 713,507 - ABZR87_RS03415 0.51 -2.2 713,507 - ABZR87_RS03415 0.51 +1.5 713,588 + ABZR87_RS03415 0.67 -0.9 713,588 + ABZR87_RS03415 0.67 -0.9 713,588 + ABZR87_RS03415 0.67 -0.4 713,588 + ABZR87_RS03415 0.67 -0.2 713,588 + ABZR87_RS03415 0.67 -0.5 713,588 + ABZR87_RS03415 0.67 -1.1 713,588 + ABZR87_RS03415 0.67 +0.7 713,588 + ABZR87_RS03415 0.67 +0.3 713,588 + ABZR87_RS03415 0.67 -0.4 713,588 + ABZR87_RS03415 0.67 -0.2 713,588 + ABZR87_RS03415 0.67 -1.9 713,588 + ABZR87_RS03415 0.67 +0.1 713,588 + ABZR87_RS03415 0.67 -1.9 713,588 + ABZR87_RS03415 0.67 -0.5 713,588 + ABZR87_RS03415 0.67 -1.2 713,589 - ABZR87_RS03415 0.67 -0.3 713,589 - ABZR87_RS03415 0.67 -0.1 713,589 - ABZR87_RS03415 0.67 -1.1 713,589 - ABZR87_RS03415 0.67 -0.0 713,589 - ABZR87_RS03415 0.67 -0.1 713,589 - ABZR87_RS03415 0.67 -3.2 713,589 - ABZR87_RS03415 0.67 -2.4 713,589 - ABZR87_RS03415 0.67 -0.3 713,589 - ABZR87_RS03415 0.67 -0.3 713,589 - ABZR87_RS03415 0.67 -2.1 713,735 + -1.6 713,735 + -2.7 713,736 - -0.1 714,014 + ABZR87_RS03420 0.63 -2.4 714,162 + -1.0 714,162 + +0.8 714,162 + +0.9 714,162 + -0.9 714,162 + +0.5 714,162 + -0.1 714,163 - -1.2 714,163 - +0.0 714,163 - -0.6 714,334 + ABZR87_RS03425 0.25 -1.1 714,334 + ABZR87_RS03425 0.25 -2.4 714,334 + ABZR87_RS03425 0.25 -1.7 714,335 - ABZR87_RS03425 0.26 -0.6 714,335 - ABZR87_RS03425 0.26 -0.5 714,479 - ABZR87_RS03425 0.45 -0.7 714,479 - ABZR87_RS03425 0.45 -0.4 714,592 + ABZR87_RS03425 0.60 -1.9 714,592 + ABZR87_RS03425 0.60 -1.4 714,593 - ABZR87_RS03425 0.60 -1.4 714,658 + ABZR87_RS03425 0.69 +0.5 714,738 + ABZR87_RS03425 0.80 -1.6 714,738 + ABZR87_RS03425 0.80 -1.5 714,738 + ABZR87_RS03425 0.80 +0.2 714,738 + ABZR87_RS03425 0.80 -1.5 714,739 - ABZR87_RS03425 0.80 -0.1 714,739 - ABZR87_RS03425 0.80 -0.7 715,026 + ABZR87_RS03430 0.13 -1.4 715,026 + ABZR87_RS03430 0.13 +0.1 715,027 - ABZR87_RS03430 0.13 -0.4 715,244 + ABZR87_RS03430 0.33 -0.6 715,244 + ABZR87_RS03430 0.33 -0.4 715,244 + ABZR87_RS03430 0.33 -1.5 715,245 - ABZR87_RS03430 0.33 +1.5 715,245 - ABZR87_RS03430 0.33 -1.5 715,245 - ABZR87_RS03430 0.33 -1.4 715,245 - ABZR87_RS03430 0.33 +0.6 715,245 - ABZR87_RS03430 0.33 -1.8 715,245 - ABZR87_RS03430 0.33 -0.6 715,245 - ABZR87_RS03430 0.33 -1.1 715,245 - ABZR87_RS03430 0.33 +1.5 715,364 + ABZR87_RS03430 0.44 +0.4 715,365 - ABZR87_RS03430 0.44 -1.7 715,365 - ABZR87_RS03430 0.44 -1.3 715,424 + ABZR87_RS03430 0.49 -0.8 715,424 + ABZR87_RS03430 0.49 -1.0 715,424 + ABZR87_RS03430 0.49 +2.3 715,424 + ABZR87_RS03430 0.49 -0.5 715,425 - ABZR87_RS03430 0.50 -1.1 715,425 - ABZR87_RS03430 0.50 -0.6 715,425 - ABZR87_RS03430 0.50 -0.6 715,425 - ABZR87_RS03430 0.50 -1.9 715,425 - ABZR87_RS03430 0.50 +0.3 715,425 - ABZR87_RS03430 0.50 -0.1 715,574 + ABZR87_RS03430 0.63 -3.5 715,607 + ABZR87_RS03430 0.66 +0.2 715,607 + ABZR87_RS03430 0.66 -3.0 715,608 - ABZR87_RS03430 0.66 -3.6 715,608 - ABZR87_RS03430 0.66 +0.2 715,665 + ABZR87_RS03430 0.72 -0.6 715,665 + ABZR87_RS03430 0.72 -1.3 715,666 - ABZR87_RS03430 0.72 -0.1 715,736 + ABZR87_RS03430 0.78 -1.2 715,736 + ABZR87_RS03430 0.78 +0.4 715,737 - ABZR87_RS03430 0.78 +1.3 715,737 - ABZR87_RS03430 0.78 -0.1 715,737 - ABZR87_RS03430 0.78 -1.1 715,737 - ABZR87_RS03430 0.78 +0.6 715,747 + ABZR87_RS03430 0.79 -2.5 715,747 + ABZR87_RS03430 0.79 -1.4 715,835 + ABZR87_RS03430 0.88 -1.5 715,835 + ABZR87_RS03430 0.88 -1.0 715,847 + ABZR87_RS03430 0.89 +0.5 715,848 - ABZR87_RS03430 0.89 -1.6 715,848 - ABZR87_RS03430 0.89 -1.9
Or see this region's nucleotide sequence