Experiment: root EcoFAB sample 2; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS02685 and ABZR87_RS02690 are separated by 150 nucleotides ABZR87_RS02690 and ABZR87_RS02695 are separated by 0 nucleotides
ABZR87_RS02685: ABZR87_RS02685 - ribosome biogenesis GTP-binding protein YihA/YsxC, at 570,928 to 571,629
_RS02685
ABZR87_RS02690: ABZR87_RS02690 - porphobilinogen synthase, at 571,780 to 572,775
_RS02690
ABZR87_RS02695: ABZR87_RS02695 - protein-disulfide reductase DsbD, at 572,776 to 574,608
_RS02695
Position (kb) 571
572
573 Strain fitness (log2 ratio) -2
-1
0
1
2 at 570.843 kb on + strand at 570.843 kb on + strand at 570.843 kb on + strand at 570.844 kb on - strand at 570.848 kb on + strand at 570.848 kb on + strand at 570.848 kb on + strand at 570.848 kb on + strand at 570.849 kb on - strand at 570.849 kb on - strand at 570.849 kb on - strand at 570.911 kb on + strand at 570.917 kb on + strand at 570.917 kb on + strand at 570.917 kb on + strand at 570.917 kb on + strand at 571.718 kb on + strand at 571.718 kb on + strand at 571.718 kb on + strand at 571.718 kb on + strand at 571.718 kb on + strand at 571.718 kb on + strand at 571.718 kb on + strand at 571.719 kb on - strand at 571.719 kb on - strand at 571.719 kb on - strand at 571.719 kb on - strand at 571.719 kb on - strand at 571.719 kb on - strand at 571.719 kb on - strand at 571.719 kb on - strand at 571.719 kb on - strand at 571.719 kb on - strand at 571.719 kb on - strand at 571.728 kb on - strand at 571.766 kb on + strand at 571.766 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction root EcoFAB sample 2; outgrowth in LB remove 570,843 + -2.6 570,843 + +0.3 570,843 + -0.5 570,844 - -0.1 570,848 + +0.9 570,848 + -1.4 570,848 + +1.1 570,848 + +0.4 570,849 - -1.2 570,849 - -0.6 570,849 - -2.3 570,911 + +1.8 570,917 + -0.7 570,917 + -2.6 570,917 + -0.7 570,917 + +0.1 571,718 + -0.4 571,718 + -0.4 571,718 + -0.6 571,718 + +0.8 571,718 + +1.2 571,718 + -1.6 571,718 + -1.0 571,719 - +0.0 571,719 - +1.1 571,719 - -0.5 571,719 - -0.5 571,719 - +1.3 571,719 - -0.3 571,719 - -0.3 571,719 - -0.7 571,719 - -0.6 571,719 - +1.2 571,719 - +1.1 571,728 - +1.6 571,766 + +2.0 571,766 + +1.3
Or see this region's nucleotide sequence